mRNA_P-wetherbeei_contig54584.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54584.1.1
Unique NamemRNA_P-wetherbeei_contig54584.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54584.1.1 vs. uniprot
Match: A0A2P8GI92_9BACT (TonB-linked SusC/RagA family outer membrane protein n=5 Tax=Dyadobacter TaxID=120831 RepID=A0A2P8GI92_9BACT)

HSP 1 Score: 237 bits (604), Expect = 4.080e-70
Identity = 123/135 (91.11%), Postives = 128/135 (94.81%), Query Frame = 1
Query:    1 QKVSIHVKNQEIKSVLKELDKSCDVHFTYAPSIFPARYRVNIQVSNKSLGEVLDELLTPLEVSYQVDGQQVILKKEESEPGLITDEVNNSTSLDKQIKGTVKDEKGELLAGVTIMVRGSNQGTVTDAAGSFSLNL 405
            QKVSIHVKNQEIKSVLKELDK CDVHFTYAPSIFPAR+RVN+QVSNKSLGEVLDELLTPLEV YQVDGQQVILKKEESEPG  TD  NNST LDKQIKGTVKDEKG+LLAGVTIMV+GSNQGTVTDAAGSFSLN+
Sbjct:   31 QKVSIHVKNQEIKSVLKELDKICDVHFTYAPSIFPARHRVNVQVSNKSLGEVLDELLTPLEVIYQVDGQQVILKKEESEPGPTTDGANNSTLLDKQIKGTVKDEKGDLLAGVTIMVKGSNQGTVTDAAGSFSLNM 165          
BLAST of mRNA_P-wetherbeei_contig54584.1.1 vs. uniprot
Match: A0A5B0FCP5_9BACT (TonB-dependent receptor n=4 Tax=Dyadobacter TaxID=120831 RepID=A0A5B0FCP5_9BACT)

HSP 1 Score: 120 bits (302), Expect = 4.000e-29
Identity = 63/137 (45.99%), Postives = 93/137 (67.88%), Query Frame = 1
Query:    4 KVSIHVKNQEIKSVLKELDKSCDVHFTYAPSIFPARYRVNIQVSNKSLGEVLDELLTPLEVSYQVDGQQVILKKEESEPGLITDEVNN---STSLDKQIKGTVKDEKGELLAGVTIMVRGSNQGTVTDAAGSFSLNL 405
            ++S+ +K ++IK VLKE++KS  VHF+Y+P +  +   V I V + +LGEVL +LLTPL++SY V G+Q++L   E  P  + +  NN     S+DK + G V DEKG+ L GV+IMV+GSNQGT TD  G++ L +
Sbjct:   43 RLSLDLKEKKIKLVLKEIEKSAGVHFSYSPQVIESGRPVTISVKDATLGEVLRQLLTPLQISYDVTGKQIVLSNSEQPPKPVKE--NNPGVQQSIDKSVNGRVTDEKGDALPGVSIMVKGSNQGTTTDNDGNYRLTV 177          
BLAST of mRNA_P-wetherbeei_contig54584.1.1 vs. uniprot
Match: A0A2N7B3R8_9BACT (SusC/RagA family TonB-linked outer membrane protein (Fragment) n=1 Tax=Siphonobacter sp. BAB-5405 TaxID=1864825 RepID=A0A2N7B3R8_9BACT)

HSP 1 Score: 117 bits (294), Expect = 4.540e-28
Identity = 57/133 (42.86%), Postives = 88/133 (66.17%), Query Frame = 1
Query:    1 QKVSIHVKNQEIKSVLKELDKSCDVHFTYAPSIFPARYRVNIQVSNKSLGEVLDELLTPLEVSYQVDGQQVILKKEESEPGLITDEVNNSTSLDKQIKGTVKDEKGELLAGVTIMVRGSNQGTVTDAAGSFSL 399
            Q VS++V+NQ++K+VL EL ++  + FTY P +     +V ++  ++ L  VLD LLTPL +SYQV GQ ++L+K+ S+           T+ D+ I GTV DEKGE + GV+++++G+ +GTVTD  GSF L
Sbjct:   43 QPVSLNVENQDLKAVLNELSRAARIKFTYVPQVIAVENKVTLKAQHERLDVVLDRLLTPLHISYQVSGQYIVLRKQTSQSSTSNPNQPFETTADRTITGTVTDEKGEAIPGVSVLLKGTQRGTVTDPQGSFRL 175          
BLAST of mRNA_P-wetherbeei_contig54584.1.1 vs. uniprot
Match: UPI0007D89A76 (TonB-dependent receptor n=1 Tax=Emticicia sp. MM TaxID=1839755 RepID=UPI0007D89A76)

HSP 1 Score: 117 bits (293), Expect = 6.520e-28
Identity = 61/137 (44.53%), Postives = 98/137 (71.53%), Query Frame = 1
Query:    4 KVSIHVKNQEIKSVLKELDKSCDVHFTYAPSIFPARYRVNIQVSNKSLGEVLDELLTPLEVSYQVDGQQVILKKEESEPGLITDEVNNSTS---LDKQIKGTVKDEKGELLAGVTIMVRGSNQGTVTDAAGSFSLNL 405
            ++S+  + Q IK VL E++KS D+ F Y+ ++  A   V+I++ N +LG+VL  LL+PL++ Y+V G+Q+ILK+ E + GLI +E N  T+   LDK IKG+VKD+KGE++ G +I V+G+N+GT +D  G FS+++
Sbjct:   46 RISLKAEVQPIKKVLNEIEKSADIRFIYSSNLIKAEKTVSIKMDNSTLGDVLKNLLSPLQLDYKVMGKQIILKRIEPKVGLIENE-NLQTAPIILDKPIKGSVKDDKGEMIVGASIAVKGTNKGTTSDINGEFSMSV 181          
BLAST of mRNA_P-wetherbeei_contig54584.1.1 vs. uniprot
Match: A0A2S7IGM9_9BACT (SusC/RagA family TonB-linked outer membrane protein n=1 Tax=Siphonobacter curvatus TaxID=2094562 RepID=A0A2S7IGM9_9BACT)

HSP 1 Score: 115 bits (289), Expect = 2.260e-27
Identity = 56/133 (42.11%), Postives = 87/133 (65.41%), Query Frame = 1
Query:    1 QKVSIHVKNQEIKSVLKELDKSCDVHFTYAPSIFPARYRVNIQVSNKSLGEVLDELLTPLEVSYQVDGQQVILKKEESEPGLITDEVNNSTSLDKQIKGTVKDEKGELLAGVTIMVRGSNQGTVTDAAGSFSL 399
            Q VS++V+NQ++K+VL EL ++  + FTY P +     +V ++  ++ L  VLD LLTPL +SYQV GQ ++L+K+  +           T+ D+ I GTV DEKGE + GV+++++G+ +GTVTD  GSF L
Sbjct:   43 QPVSLNVENQDLKAVLNELSRAARIKFTYVPQVIAVENKVTLKAKHERLDVVLDRLLTPLHISYQVSGQYIVLRKQTPQSSTSNPNQPFETTADRTITGTVTDEKGEAIPGVSVLLKGTQRGTVTDPQGSFRL 175          
BLAST of mRNA_P-wetherbeei_contig54584.1.1 vs. uniprot
Match: A0A5B0FWK8_9BACT (SusC/RagA family TonB-linked outer membrane protein n=2 Tax=Dyadobacter sp. UC 10 TaxID=2605428 RepID=A0A5B0FWK8_9BACT)

HSP 1 Score: 115 bits (288), Expect = 3.070e-27
Identity = 57/135 (42.22%), Postives = 90/135 (66.67%), Query Frame = 1
Query:    1 QKVSIHVKNQEIKSVLKELDKSCDVHFTYAPSIFPARYRVNIQVSNKSLGEVLDELLTPLEVSYQVDGQQVILKKEESEPGLITDEVNNSTSLDKQIKGTVKDEKGELLAGVTIMVRGSNQGTVTDAAGSFSLNL 405
            Q+++I V NQ++K+VL  L+K   V FTY  S+  A+ RV+I    K LG+VL+EL  P+ V+Y+++G+Q++L K   EPG    EV   +++D+ + G V DEKG+ L GV+I+V+G   GT T+  G+F +N+
Sbjct:    9 QRITIQVNNQDMKTVLSRLNKLTQVRFTYNSSLIKAQRRVSINAVEKPLGDVLNELFRPINVTYKIEGKQIVLIKNSPEPGSHLIEVTAPSAIDRTVTGKVSDEKGQPLPGVSIVVKGLKTGTATNTEGNFEINV 143          
BLAST of mRNA_P-wetherbeei_contig54584.1.1 vs. uniprot
Match: A0A5R9L3N8_9BACT (SusC/RagA family TonB-linked outer membrane protein n=4 Tax=Dyadobacter TaxID=120831 RepID=A0A5R9L3N8_9BACT)

HSP 1 Score: 114 bits (286), Expect = 5.730e-27
Identity = 54/136 (39.71%), Postives = 94/136 (69.12%), Query Frame = 1
Query:    1 QKVSIHVKNQEIKSVLKELDKSCDVHFTYAPSIFPARYRVNIQVSNKSLGEVLDELLTPLEVSYQVDGQQVILKKEESEPG-LITDEVNNSTSLDKQIKGTVKDEKGELLAGVTIMVRGSNQGTVTDAAGSFSLNL 405
            Q++++ V NQEIK+VL +L+K   + FTY  S+  ++ +V++    + L +VLDE+  P+ +SY+++G+QV+L K  +EPG LI   V+N +++D+ I G V DEKG+ L GV+++V+G   GT T+  G++ L++
Sbjct:   31 QRITLQVNNQEIKTVLNKLNKLTQIRFTYNSSLIRSQQKVSVNAVERPLADVLDEIFRPINISYKIEGKQVVLTKSTAEPGSLIPLPVHNPSNIDRTISGKVSDEKGQPLPGVSVVVKGGKNGTATNTEGTYELSV 166          
BLAST of mRNA_P-wetherbeei_contig54584.1.1 vs. uniprot
Match: UPI001F3C8F8A (SusC/RagA family TonB-linked outer membrane protein n=1 Tax=Dyadobacter sp. CY326 TaxID=2907300 RepID=UPI001F3C8F8A)

HSP 1 Score: 114 bits (286), Expect = 5.730e-27
Identity = 57/135 (42.22%), Postives = 90/135 (66.67%), Query Frame = 1
Query:    1 QKVSIHVKNQEIKSVLKELDKSCDVHFTYAPSIFPARYRVNIQVSNKSLGEVLDELLTPLEVSYQVDGQQVILKKEESEPGLITDEVNNSTSLDKQIKGTVKDEKGELLAGVTIMVRGSNQGTVTDAAGSFSLNL 405
            QKV+I V NQEIK+VL +L+K   + FTY+ S+  ++ +V+I    K L +VLD+L  P+ +SY+++G+QV+L K   EP      V N  ++D+ I G V DEKG+ L GV+I+V+ +  GT T+A G++ L++
Sbjct:   45 QKVTIQVNNQEIKAVLNKLNKLTQIRFTYSSSLLRSQQKVSINAVEKPLADVLDQLFRPINISYKIEGKQVVLLKGNVEPASAIPAVTNDPAVDRTISGKVSDEKGQPLPGVSIVVKSTKVGTATNAEGAYQLSV 179          
BLAST of mRNA_P-wetherbeei_contig54584.1.1 vs. uniprot
Match: A0A327NF89_9BACT (SusC/RagA family TonB-linked outer membrane protein n=3 Tax=Spirosoma TaxID=107 RepID=A0A327NF89_9BACT)

HSP 1 Score: 113 bits (282), Expect = 1.970e-26
Identity = 55/137 (40.15%), Postives = 94/137 (68.61%), Query Frame = 1
Query:    4 KVSIHVKNQEIKSVLKELDKSCDVHFTYAPSIFPARYRVNIQVSNKSLGEVLDELLTPLEVSYQVDGQQVILKKEESEPGLITDEVNNST---SLDKQIKGTVKDEKGELLAGVTIMVRGSNQGTVTDAAGSFSLNL 405
            ++S+ V+NQ IK VL E++KS ++ F Y+ ++  +  ++++ + N +LGE L+ LLTPL++ Y+V G+Q++L + E + GLI  +V + T    LD  IKGTV  E GE L GV+I+++G+ +GT TD  G+F +++
Sbjct:   32 RISLKVENQSIKKVLNEIEKSAEIRFIYSSNLIKSERKISLNLDNSTLGEALENLLTPLQLGYKVLGKQIVLNRVEPKAGLILKDVPDVTVVSPLDIPIKGTVTSESGEQLPGVSIVIKGTQRGTTTDQNGAFKIDV 168          
BLAST of mRNA_P-wetherbeei_contig54584.1.1 vs. uniprot
Match: C6W4Z2_DYAFD (TonB-dependent receptor plug n=15 Tax=Dyadobacter TaxID=120831 RepID=C6W4Z2_DYAFD)

HSP 1 Score: 112 bits (280), Expect = 3.680e-26
Identity = 55/136 (40.44%), Postives = 92/136 (67.65%), Query Frame = 1
Query:    1 QKVSIHVKNQEIKSVLKELDKSCDVHFTYAPSIFPARYRVNIQVSNKSLGEVLDELLTPLEVSYQVDGQQVILKKEESEPG-LITDEVNNSTSLDKQIKGTVKDEKGELLAGVTIMVRGSNQGTVTDAAGSFSLNL 405
            QK++I V N E+K+VL +L+K   + FTY+ S+   + +V++   +K LG++LD+L  P  ++Y++DG+QV+L K   EPG  + + + N +S+D+ I G V DEKG  L GV+I+V+ +  GT TD+ G+F L++
Sbjct:   31 QKITIQVSNLEMKTVLTKLNKLTQLRFTYSSSLIKTQRKVSLNAVDKPLGDILDDLFKPANITYKIDGRQVVLIKNPGEPGSALPETIRNQSSIDRNITGKVTDEKGIPLPGVSIVVKDTKAGTATDSEGAFQLSV 166          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54584.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P8GI92_9BACT4.080e-7091.11TonB-linked SusC/RagA family outer membrane protei... [more]
A0A5B0FCP5_9BACT4.000e-2945.99TonB-dependent receptor n=4 Tax=Dyadobacter TaxID=... [more]
A0A2N7B3R8_9BACT4.540e-2842.86SusC/RagA family TonB-linked outer membrane protei... [more]
UPI0007D89A766.520e-2844.53TonB-dependent receptor n=1 Tax=Emticicia sp. MM T... [more]
A0A2S7IGM9_9BACT2.260e-2742.11SusC/RagA family TonB-linked outer membrane protei... [more]
A0A5B0FWK8_9BACT3.070e-2742.22SusC/RagA family TonB-linked outer membrane protei... [more]
A0A5R9L3N8_9BACT5.730e-2739.71SusC/RagA family TonB-linked outer membrane protei... [more]
UPI001F3C8F8A5.730e-2742.22SusC/RagA family TonB-linked outer membrane protei... [more]
A0A327NF89_9BACT1.970e-2640.15SusC/RagA family TonB-linked outer membrane protei... [more]
C6W4Z2_DYAFD3.680e-2640.44TonB-dependent receptor plug n=15 Tax=Dyadobacter ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54584contigP-wetherbeei_contig54584:55..459 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1121481.AUAS01000002_gene3215
PFAMsCarbopepD_reg_2,Plug,STN,TonB_dep_Rec
Model size405
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.28e-27
EggNOG OGsCOG1629@1|root,COG4774@1|root,COG1629@2|Bacteria,COG4774@2|Bacteria,4PKAS@976|Bacteroidetes,47U0A@768503|Cytophagia
DescriptionTonB dependent receptor
Cds size405
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186815.2679853-CDS-P-wetherbeei_contig54584:54..4591683186815.2679853-CDS-P-wetherbeei_contig54584:54..459Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54584 55..459 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54584.1.1prot_P-wetherbeei_contig54584.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54584 55..459 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54584.1.1

>prot_P-wetherbeei_contig54584.1.1 ID=prot_P-wetherbeei_contig54584.1.1|Name=mRNA_P-wetherbeei_contig54584.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=135bp
QKVSIHVKNQEIKSVLKELDKSCDVHFTYAPSIFPARYRVNIQVSNKSLG
EVLDELLTPLEVSYQVDGQQVILKKEESEPGLITDEVNNSTSLDKQIKGT
VKDEKGELLAGVTIMVRGSNQGTVTDAAGSFSLNL
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mRNA from alignment at P-wetherbeei_contig54584:55..459-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54584.1.1 ID=mRNA_P-wetherbeei_contig54584.1.1|Name=mRNA_P-wetherbeei_contig54584.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig54584:55..459- (Phaeothamnion wetherbeei SAG_119_79)
CAAAAGGTATCCATTCATGTAAAAAATCAGGAGATTAAAAGTGTTCTGAA AGAACTTGATAAAAGTTGCGATGTACATTTTACCTACGCGCCGTCGATTT TTCCGGCTCGATATCGGGTAAATATCCAGGTAAGCAACAAGTCACTGGGA GAGGTTTTGGATGAACTGCTTACACCACTTGAGGTAAGCTATCAGGTAGA CGGCCAGCAGGTGATTTTGAAAAAGGAGGAAAGTGAGCCCGGCCTGATAA CGGACGAAGTAAATAACTCCACATCTCTGGACAAGCAGATCAAAGGTACC GTTAAAGACGAAAAAGGCGAGCTGTTGGCTGGCGTTACGATCATGGTAAG AGGGTCGAATCAGGGAACTGTTACGGACGCGGCGGGGAGTTTTTCGCTCA ATTTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54584:55..459-

>mRNA_P-wetherbeei_contig54584.1.1 ID=mRNA_P-wetherbeei_contig54584.1.1|Name=mRNA_P-wetherbeei_contig54584.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig54584:55..459- (Phaeothamnion wetherbeei SAG_119_79)
CAAAAGGTATCCATTCATGTAAAAAATCAGGAGATTAAAAGTGTTCTGAA
AGAACTTGATAAAAGTTGCGATGTACATTTTACCTACGCGCCGTCGATTT
TTCCGGCTCGATATCGGGTAAATATCCAGGTAAGCAACAAGTCACTGGGA
GAGGTTTTGGATGAACTGCTTACACCACTTGAGGTAAGCTATCAGGTAGA
CGGCCAGCAGGTGATTTTGAAAAAGGAGGAAAGTGAGCCCGGCCTGATAA
CGGACGAAGTAAATAACTCCACATCTCTGGACAAGCAGATCAAAGGTACC
GTTAAAGACGAAAAAGGCGAGCTGTTGGCTGGCGTTACGATCATGGTAAG
AGGGTCGAATCAGGGAACTGTTACGGACGCGGCGGGGAGTTTTTCGCTCA
ATTTA
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