mRNA_P-wetherbeei_contig54451.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54451.1.1
Unique NamemRNA_P-wetherbeei_contig54451.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54451.1.1 vs. uniprot
Match: N0B8V7_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 TaxID=670307 RepID=N0B8V7_9HYPH)

HSP 1 Score: 73.6 bits (179), Expect = 1.330e-12
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 1
Query:    1 LHGDAGNDDYVIDNALDINKSRADAGVDDVLASVSYALGAHQENLTLAGIAALNATGNSLANTL 192
            L G AGND Y+I N  D+    + AG D VL+SV+Y LG++ ENLTL G AA+NATGN+LANTL
Sbjct:  168 LAGGAGNDTYIIQNTTDVVSEASSAGTDTVLSSVTYTLGSNVENLTLTGAAAINATGNALANTL 231          
BLAST of mRNA_P-wetherbeei_contig54451.1.1 vs. uniprot
Match: UPI00138AC6CF (calcium-binding protein n=1 Tax=Rhizobium fredii TaxID=380 RepID=UPI00138AC6CF)

HSP 1 Score: 70.5 bits (171), Expect = 1.690e-11
Identity = 71/128 (55.47%), Postives = 81/128 (63.28%), Query Frame = 1
Query:   28 YVIDNALDINKSRADAGVDDVLASVSYALGAHQENLTLAGIAALNATGNSLANTLRXXXXXXXXXXXXXXXXXXXXXXGDTLVYDSRDALLDGGLGKDTLLLTGHGVTLNATSLRMVTNIEVIDLRGN 411
            YVIDNA D+    A  G D V ASVS AL A  ENLTL GIAALN TGNSLANTL XXXXXXXXXXXXXXXXXXXXX  DT V D+ D ++    G       G     ++ SL +  N+E +   G+
Sbjct:  261 YVIDNAGDVVTEAAGGGTDTVQASVSLALAAEVENLTLTGIAALNGTGNSLANTLTXXXXXXXXXXXXXXXXXXXXXGNDTYVVDNADDIVTEAAGG------GTDSVQSSISLTLAANVENLTFTGS 382          
BLAST of mRNA_P-wetherbeei_contig54451.1.1 vs. uniprot
Match: UPI001F3C5055 (calcium-binding protein n=2 Tax=Rhizobium fredii TaxID=380 RepID=UPI001F3C5055)

HSP 1 Score: 70.5 bits (171), Expect = 1.900e-11
Identity = 71/128 (55.47%), Postives = 81/128 (63.28%), Query Frame = 1
Query:   28 YVIDNALDINKSRADAGVDDVLASVSYALGAHQENLTLAGIAALNATGNSLANTLRXXXXXXXXXXXXXXXXXXXXXXGDTLVYDSRDALLDGGLGKDTLLLTGHGVTLNATSLRMVTNIEVIDLRGN 411
            YVIDNA D+    A  G D V ASVS AL A  ENLTL GIAALN TGNSLANTL XXXXXXXXXXXXXXXXXXXXX  DT V D+ D ++    G       G     ++ SL +  N+E +   G+
Sbjct:  571 YVIDNAGDVVTEAAGGGTDTVQASVSLALAAEVENLTLTGIAALNGTGNSLANTLTXXXXXXXXXXXXXXXXXXXXXGNDTYVVDNADDIVTEAAGG------GTDSVQSSISLTLAANVENLTFTGS 692          
BLAST of mRNA_P-wetherbeei_contig54451.1.1 vs. uniprot
Match: UPI001F551ACC (putative Ig domain-containing protein n=1 Tax=Anabaena cylindrica TaxID=1165 RepID=UPI001F551ACC)

HSP 1 Score: 68.2 bits (165), Expect = 1.250e-10
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 1
Query:   19 NDDYVIDNALDINKSRADAGVDDVLASVSYALGAHQENLTLAGIAALNATGNSLANTL 192
            ND+Y +DNALD+ +  A  G D VL+SVSY LG + ENLTL G AA+N TGN+ ANTL
Sbjct:  614 NDNYEVDNALDVVQEAAGEGTDSVLSSVSYTLGTNLENLTLTGAAAINGTGNASANTL 671          
BLAST of mRNA_P-wetherbeei_contig54451.1.1 vs. uniprot
Match: K9ZQA6_ANACC (Proprotein convertase P n=1 Tax=Anabaena cylindrica (strain ATCC 27899 / PCC 7122) TaxID=272123 RepID=K9ZQA6_ANACC)

HSP 1 Score: 68.2 bits (165), Expect = 1.260e-10
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 1
Query:   19 NDDYVIDNALDINKSRADAGVDDVLASVSYALGAHQENLTLAGIAALNATGNSLANTL 192
            ND+Y +DNALD+ +  A  G D VL+SVSY LG + ENLTL G AA+N TGN+ ANTL
Sbjct: 2534 NDNYEVDNALDVVQEAAGEGTDSVLSSVSYTLGTNLENLTLTGAAAINGTGNASANTL 2591          
BLAST of mRNA_P-wetherbeei_contig54451.1.1 vs. uniprot
Match: UPI00197FA244 (hypothetical protein n=1 Tax=Pseudomonas viridiflava TaxID=33069 RepID=UPI00197FA244)

HSP 1 Score: 67.4 bits (163), Expect = 2.250e-10
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 1
Query:   22 DDYVIDNALDINKSRADAGVDDVLASVSYALGAHQENLTLAGIAALNATGNSLANTLR 195
            D Y+++NA D     AD G+D V +S+SY LGAH ENLTL G AA+N TGN+LANTLR
Sbjct: 1008 DRYIVENAGDRVMEMADGGLDQVDSSISYTLGAHVENLTLTGSAAINGTGNALANTLR 1065          
BLAST of mRNA_P-wetherbeei_contig54451.1.1 vs. uniprot
Match: UPI0017804862 (calcium-binding protein n=1 Tax=Rhizobium sp. ARZ01 TaxID=2769313 RepID=UPI0017804862)

HSP 1 Score: 66.6 bits (161), Expect = 3.890e-10
Identity = 35/64 (54.69%), Postives = 44/64 (68.75%), Query Frame = 1
Query:    1 LHGDAGNDDYVIDNALDINKSRADAGVDDVLASVSYALGAHQENLTLAGIAALNATGNSLANTL 192
            + G  GND Y++DN  D    +A+ G+D V ASVSY L A+ ENLTLAG A +N TGN+LAN L
Sbjct:  340 MQGGKGNDTYIVDNLADTVAEKANEGIDLVQASVSYTLAANIENLTLAGAAKINGTGNTLANVL 403          
BLAST of mRNA_P-wetherbeei_contig54451.1.1 vs. uniprot
Match: UPI0013EE69DB (calcium-binding protein n=1 Tax=Azospira oryzae TaxID=146939 RepID=UPI0013EE69DB)

HSP 1 Score: 66.2 bits (160), Expect = 5.030e-10
Identity = 52/149 (34.90%), Postives = 70/149 (46.98%), Query Frame = 1
Query:    1 LHGDAGNDDYVIDNALDINKSRADAGVDDVLASVSYALGAHQENLTLAGIAALNATGNSLANTLRXXXXXXXXXXXXXXXXXXXXXXGDTLVYD--------SRDALLDGGL------GKDTLLLTG--HGVTLNATSLRMVTNIEVID 399
            + G  GND Y +D+  D+     + G+D VL+S+SY LGA+ ENLTL G A L  TGN L NT+                        DT   D        S  A+L   +      G DT++L G   G+T NAT+L +  NIE +D
Sbjct:  247 MSGGTGNDTYTVDDVSDVVTEAENEGIDTVLSSISYTLGANVENLTLTGTAHLTGTGNELKNTIIGNSGNNAIDGGGDIDILKGGKGNDTYTVDIVQSGSGASATAVLQDTVTELLNEGNDTVVLRGTVSGLT-NATTLLVGANIENLD 394          
BLAST of mRNA_P-wetherbeei_contig54451.1.1 vs. uniprot
Match: UPI001CD842D4 (calcium-binding protein n=1 Tax=Novosphingobium sp. c7 TaxID=2866625 RepID=UPI001CD842D4)

HSP 1 Score: 66.2 bits (160), Expect = 5.530e-10
Identity = 37/60 (61.67%), Postives = 42/60 (70.00%), Query Frame = 1
Query:   16 GNDDYVIDNALDINKSRADAGVDDVLASVSYALGAHQENLTLAGIAALNATGNSLANTLR 195
            GND YV+DNA D     A+ G D VLASVS+ LGA  ENLTL G  A+NATGN +AN LR
Sbjct:  480 GNDTYVVDNAADQVVEIANEGRDQVLASVSFVLGADVENLTLTGTGAINATGNGVANVLR 539          
BLAST of mRNA_P-wetherbeei_contig54451.1.1 vs. uniprot
Match: UPI001F29375D (PA14 domain-containing protein n=1 Tax=Pelomonas sp. P8 TaxID=2906762 RepID=UPI001F29375D)

HSP 1 Score: 66.2 bits (160), Expect = 5.930e-10
Identity = 73/130 (56.15%), Postives = 83/130 (63.85%), Query Frame = 1
Query:   22 DDYVIDNALDINKSRADAGVDDVLASVSYALGAHQENLTLAGIAALNATGNSLANTLRXXXXXXXXXXXXXXXXXXXXXXGDTLVY-DSRDALLDGGLGKDTLLLTGHGVTLNATSLRMVTNIEVIDLRG 408
            D Y++DN  D    +A  G D V ASVS+AL A+ ENLTL G A ++ATGNS AN + XXXXXXXXXXXXXXXXXXXXXX   LV  D   A +DGG G D L L G GVT        V  IEV+D  G
Sbjct: 1835 DTYIVDNVGDQLYEQAGGGTDTVNASVSWALAANFENLTLTGSANISATGNSAANIIXXXXXXXXXXXXXXXXXXXXXXXXXXLVVSDLNFASIDGGTGLDNLKLDGLGVTNVNQLTAKVRGIEVLDFFG 1964          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54451.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
N0B8V7_9HYPH1.330e-1259.38Uncharacterized protein n=1 Tax=Hyphomicrobium den... [more]
UPI00138AC6CF1.690e-1155.47calcium-binding protein n=1 Tax=Rhizobium fredii T... [more]
UPI001F3C50551.900e-1155.47calcium-binding protein n=2 Tax=Rhizobium fredii T... [more]
UPI001F551ACC1.250e-1060.34putative Ig domain-containing protein n=1 Tax=Anab... [more]
K9ZQA6_ANACC1.260e-1060.34Proprotein convertase P n=1 Tax=Anabaena cylindric... [more]
UPI00197FA2442.250e-1060.34hypothetical protein n=1 Tax=Pseudomonas viridifla... [more]
UPI00178048623.890e-1054.69calcium-binding protein n=1 Tax=Rhizobium sp. ARZ0... [more]
UPI0013EE69DB5.030e-1034.90calcium-binding protein n=1 Tax=Azospira oryzae Ta... [more]
UPI001CD842D45.530e-1061.67calcium-binding protein n=1 Tax=Novosphingobium sp... [more]
UPI001F29375D5.930e-1056.15PA14 domain-containing protein n=1 Tax=Pelomonas s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54451contigP-wetherbeei_contig54451:6..416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog670307.HYPDE_26428
PFAMsHemolysinCabind
Model size411
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.19e-13
EggNOG OGsCOG2931@1|root,COG2931@2|Bacteria,1MU7T@1224|Proteobacteria,2TRVY@28211|Alphaproteobacteria
DescriptionCOG2931 RTX toxins and related Ca2 -binding proteins
Cds size411
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186813.79655-CDS-P-wetherbeei_contig54451:5..4161683186813.79655-CDS-P-wetherbeei_contig54451:5..416Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54451 6..416 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54451.1.1prot_P-wetherbeei_contig54451.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54451 6..416 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54451.1.1

>prot_P-wetherbeei_contig54451.1.1 ID=prot_P-wetherbeei_contig54451.1.1|Name=mRNA_P-wetherbeei_contig54451.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=137bp
LHGDAGNDDYVIDNALDINKSRADAGVDDVLASVSYALGAHQENLTLAGI
AALNATGNSLANTLRGNSAANRLDGGAGVDRISGGDGGDTLVYDSRDALL
DGGLGKDTLLLTGHGVTLNATSLRMVTNIEVIDLRGN
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mRNA from alignment at P-wetherbeei_contig54451:6..416+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54451.1.1 ID=mRNA_P-wetherbeei_contig54451.1.1|Name=mRNA_P-wetherbeei_contig54451.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig54451:6..416+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCATGGTGATGCCGGTAATGATGACTATGTCATCGACAACGCCCTGGA CATCAACAAGTCACGCGCCGATGCGGGTGTCGATGATGTGTTGGCGAGCG TCAGCTATGCGCTCGGCGCGCATCAGGAGAATCTGACCCTGGCAGGCATC GCCGCACTCAATGCCACGGGTAATAGCCTGGCCAATACCTTGCGTGGCAA TAGCGCAGCCAATCGCCTCGACGGCGGTGCAGGTGTGGACCGCATCAGCG GCGGCGATGGTGGTGACACATTGGTCTATGACAGTCGCGACGCCCTGCTC GATGGCGGACTGGGTAAGGACACGCTGCTGCTTACCGGCCACGGTGTCAC CCTCAACGCCACCAGCTTGCGCATGGTGACCAATATCGAAGTGATCGATC TGCGCGGCAAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54451:6..416+

>mRNA_P-wetherbeei_contig54451.1.1 ID=mRNA_P-wetherbeei_contig54451.1.1|Name=mRNA_P-wetherbeei_contig54451.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig54451:6..416+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCATGGTGATGCCGGTAATGATGACTATGTCATCGACAACGCCCTGGA
CATCAACAAGTCACGCGCCGATGCGGGTGTCGATGATGTGTTGGCGAGCG
TCAGCTATGCGCTCGGCGCGCATCAGGAGAATCTGACCCTGGCAGGCATC
GCCGCACTCAATGCCACGGGTAATAGCCTGGCCAATACCTTGCGTGGCAA
TAGCGCAGCCAATCGCCTCGACGGCGGTGCAGGTGTGGACCGCATCAGCG
GCGGCGATGGTGGTGACACATTGGTCTATGACAGTCGCGACGCCCTGCTC
GATGGCGGACTGGGTAAGGACACGCTGCTGCTTACCGGCCACGGTGTCAC
CCTCAACGCCACCAGCTTGCGCATGGTGACCAATATCGAAGTGATCGATC
TGCGCGGCAAT
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