mRNA_P-wetherbeei_contig54403.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig54403.1.1 vs. uniprot
Match: UPI001BABF1AB (DDE-type integrase/transposase/recombinase n=2 Tax=Proteobacteria TaxID=1224 RepID=UPI001BABF1AB) HSP 1 Score: 353 bits (905), Expect = 1.040e-117 Identity = 172/176 (97.73%), Postives = 173/176 (98.30%), Query Frame = 1
Query: 1 LSLIQIDHTLVDVIVVDSETRAPIQRPWLTLAIDVCTRCVAGFHLSLEPPSATSVALCLSHGALAKDSWLAERRIDAVWPVRGIPERLHLDNAKEFRSEALKRGCEQYGIAIDHRPVRTPHYGGHIERLIGTMMGKVHLLPGTTFSNLQAKGDLIPDKTAAMTLEEVERWLGHAIA 528
LSLIQIDHTLVDVIVVDSETR IQRPWLTLAIDVCTRCVAGFHLSLEPPSATSVALCLSHGALAKDSWLAERRIDAVWPVRGIPERLHLDNAKEFRSEALKRGCEQYGIAIDHRPVRTPHYGGHIERLIGTMMGKVHLLPGTTFSN+QAKGDL PDKTAAMTLEEVERWLGHAIA
Sbjct: 169 LSLIQIDHTLVDVIVVDSETRTSIQRPWLTLAIDVCTRCVAGFHLSLEPPSATSVALCLSHGALAKDSWLAERRIDAVWPVRGIPERLHLDNAKEFRSEALKRGCEQYGIAIDHRPVRTPHYGGHIERLIGTMMGKVHLLPGTTFSNVQAKGDLNPDKTAAMTLEEVERWLGHAIA 344
BLAST of mRNA_P-wetherbeei_contig54403.1.1 vs. uniprot
Match: A0A1Q5SWM5_9BRAD (Integrase n=2 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=A0A1Q5SWM5_9BRAD) HSP 1 Score: 342 bits (878), Expect = 1.310e-113 Identity = 166/176 (94.32%), Postives = 171/176 (97.16%), Query Frame = 1
Query: 1 LSLIQIDHTLVDVIVVDSETRAPIQRPWLTLAIDVCTRCVAGFHLSLEPPSATSVALCLSHGALAKDSWLAERRIDAVWPVRGIPERLHLDNAKEFRSEALKRGCEQYGIAIDHRPVRTPHYGGHIERLIGTMMGKVHLLPGTTFSNLQAKGDLIPDKTAAMTLEEVERWLGHAIA 528
LSLIQIDHTLVDVIVVDS TR PIQRPWLTLAIDVCTRCVAGFHLSLEPPSATSVALCLSH AL+K+SWLAER IDAVWPVRGIPERLHLDNAKEFRSEALKRGCEQYGIAIDHRPVRTPHYGGHIERLIGT+MGKVHLLPGTTFSN+QAKGDL PDKTAAMTL+EVERWLGHAIA
Sbjct: 169 LSLIQIDHTLVDVIVVDSVTRMPIQRPWLTLAIDVCTRCVAGFHLSLEPPSATSVALCLSHAALSKESWLAERGIDAVWPVRGIPERLHLDNAKEFRSEALKRGCEQYGIAIDHRPVRTPHYGGHIERLIGTVMGKVHLLPGTTFSNVQAKGDLNPDKTAAMTLDEVERWLGHAIA 344
BLAST of mRNA_P-wetherbeei_contig54403.1.1 vs. uniprot
Match: A0A2G1YED3_9SPHN (Integrase n=1 Tax=Sphingobium sp. TaxID=1912891 RepID=A0A2G1YED3_9SPHN) HSP 1 Score: 340 bits (873), Expect = 7.000e-113 Identity = 163/176 (92.61%), Postives = 171/176 (97.16%), Query Frame = 1
Query: 1 LSLIQIDHTLVDVIVVDSETRAPIQRPWLTLAIDVCTRCVAGFHLSLEPPSATSVALCLSHGALAKDSWLAERRIDAVWPVRGIPERLHLDNAKEFRSEALKRGCEQYGIAIDHRPVRTPHYGGHIERLIGTMMGKVHLLPGTTFSNLQAKGDLIPDKTAAMTLEEVERWLGHAIA 528
LSLIQIDHTLVDVIVVDSETRAPIQRPWLTLAIDVCTRCVAGFHLSLEPPSATSVALCL+H AL K+SWLAER IDAVWPVRG+PERLHLDNAKEFRSEALKRGCEQYGIAIDHRPVRTPHYGGHIERLIGTMMGKVHLLPGTTFSN++ KGDL P+K+AAMTL+EVERWLGHAIA
Sbjct: 169 LSLIQIDHTLVDVIVVDSETRAPIQRPWLTLAIDVCTRCVAGFHLSLEPPSATSVALCLAHAALGKESWLAERGIDAVWPVRGVPERLHLDNAKEFRSEALKRGCEQYGIAIDHRPVRTPHYGGHIERLIGTMMGKVHLLPGTTFSNIREKGDLNPEKSAAMTLDEVERWLGHAIA 344
BLAST of mRNA_P-wetherbeei_contig54403.1.1 vs. uniprot
Match: A0A521QEE9_9HYPH (Integrase n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A521QEE9_9HYPH) HSP 1 Score: 340 bits (872), Expect = 1.020e-112 Identity = 165/176 (93.75%), Postives = 172/176 (97.73%), Query Frame = 1
Query: 1 LSLIQIDHTLVDVIVVDSETRAPIQRPWLTLAIDVCTRCVAGFHLSLEPPSATSVALCLSHGALAKDSWLAERRIDAVWPVRGIPERLHLDNAKEFRSEALKRGCEQYGIAIDHRPVRTPHYGGHIERLIGTMMGKVHLLPGTTFSNLQAKGDLIPDKTAAMTLEEVERWLGHAIA 528
LSLIQIDHTLVDVIVVDSETRAPIQRPWLTLAIDVCTRCVAGFHLSLEPPSATSVALCLSH ALAK+SWLAER IDAVWPVRGIPERLHLDNAKEFRSEALKRGCEQYG+AID+RPVRTPHYGGHIERLIGTMMGKVHLLPGTTFS+++AK DL PDKTAAMTL+EVERWLGHAIA
Sbjct: 169 LSLIQIDHTLVDVIVVDSETRAPIQRPWLTLAIDVCTRCVAGFHLSLEPPSATSVALCLSHVALAKESWLAERGIDAVWPVRGIPERLHLDNAKEFRSEALKRGCEQYGVAIDYRPVRTPHYGGHIERLIGTMMGKVHLLPGTTFSDVRAKSDLNPDKTAAMTLDEVERWLGHAIA 344
BLAST of mRNA_P-wetherbeei_contig54403.1.1 vs. uniprot
Match: M5EYS5_9HYPH (Integrase, catalytic region n=4 Tax=Hyphomicrobiales TaxID=356 RepID=M5EYS5_9HYPH) HSP 1 Score: 338 bits (868), Expect = 3.970e-112 Identity = 162/176 (92.05%), Postives = 171/176 (97.16%), Query Frame = 1
Query: 1 LSLIQIDHTLVDVIVVDSETRAPIQRPWLTLAIDVCTRCVAGFHLSLEPPSATSVALCLSHGALAKDSWLAERRIDAVWPVRGIPERLHLDNAKEFRSEALKRGCEQYGIAIDHRPVRTPHYGGHIERLIGTMMGKVHLLPGTTFSNLQAKGDLIPDKTAAMTLEEVERWLGHAIA 528
LSLIQIDHTLVDV+VVDSETRAPIQRPWLTLAIDVCTRCVAGFHLSLEPPSATSVALCL+H ALAK+SWLAER IDA WPVRGIPERLHLDNAKEFRSEALKRGCEQYGIAIDHRPVRTPHYGGHIERLIGTMMGKVHLLPGTTFS++Q KGDL P+K+AAMT++EVERWLGHAIA
Sbjct: 169 LSLIQIDHTLVDVVVVDSETRAPIQRPWLTLAIDVCTRCVAGFHLSLEPPSATSVALCLTHAALAKESWLAERAIDAEWPVRGIPERLHLDNAKEFRSEALKRGCEQYGIAIDHRPVRTPHYGGHIERLIGTMMGKVHLLPGTTFSSVQEKGDLNPEKSAAMTIDEVERWLGHAIA 344
BLAST of mRNA_P-wetherbeei_contig54403.1.1 vs. uniprot
Match: A0A7W5Z7L8_9HYPH (Putative transposase n=3 Tax=Hyphomicrobiales TaxID=356 RepID=A0A7W5Z7L8_9HYPH) HSP 1 Score: 336 bits (862), Expect = 3.280e-111 Identity = 162/176 (92.05%), Postives = 172/176 (97.73%), Query Frame = 1
Query: 1 LSLIQIDHTLVDVIVVDSETRAPIQRPWLTLAIDVCTRCVAGFHLSLEPPSATSVALCLSHGALAKDSWLAERRIDAVWPVRGIPERLHLDNAKEFRSEALKRGCEQYGIAIDHRPVRTPHYGGHIERLIGTMMGKVHLLPGTTFSNLQAKGDLIPDKTAAMTLEEVERWLGHAIA 528
LSLIQIDHTLVDVIVVDSETRAPIQRPWLTLAIDVC+RCVAGFHLSLEPPSATSVALCL+H AL+K+SWLAER IDA WPVRGIPERLHLDNAKEFRSEALKRGCEQYGIAID+RPVRTPHYGGHIERLIGTMMGKVHLLPGTTFS+++AKGDL P+KTAAMTL+EVERWLGHAIA
Sbjct: 169 LSLIQIDHTLVDVIVVDSETRAPIQRPWLTLAIDVCSRCVAGFHLSLEPPSATSVALCLTHAALSKESWLAERGIDAEWPVRGIPERLHLDNAKEFRSEALKRGCEQYGIAIDYRPVRTPHYGGHIERLIGTMMGKVHLLPGTTFSDVRAKGDLDPEKTAAMTLDEVERWLGHAIA 344
BLAST of mRNA_P-wetherbeei_contig54403.1.1 vs. uniprot
Match: UPI0018C2D031 (DDE-type integrase/transposase/recombinase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=UPI0018C2D031) HSP 1 Score: 336 bits (862), Expect = 3.280e-111 Identity = 162/176 (92.05%), Postives = 170/176 (96.59%), Query Frame = 1
Query: 1 LSLIQIDHTLVDVIVVDSETRAPIQRPWLTLAIDVCTRCVAGFHLSLEPPSATSVALCLSHGALAKDSWLAERRIDAVWPVRGIPERLHLDNAKEFRSEALKRGCEQYGIAIDHRPVRTPHYGGHIERLIGTMMGKVHLLPGTTFSNLQAKGDLIPDKTAAMTLEEVERWLGHAIA 528
LSLIQIDHTLVDVIVVDSETRAPIQRPWLTLAIDVCTRCVAGFHLSLEPPSATSVALCLSH AL+K+SWLAER IDA WPVRGIPERLHLDNAKEFRSEALKRGCEQYGIAID+RPVRTPHYGGHIERLIGTMMGKVHLLPGTTFS++Q +GDL P KTAAMTL+EVERWLGHA+A
Sbjct: 169 LSLIQIDHTLVDVIVVDSETRAPIQRPWLTLAIDVCTRCVAGFHLSLEPPSATSVALCLSHAALSKESWLAERGIDAEWPVRGIPERLHLDNAKEFRSEALKRGCEQYGIAIDYRPVRTPHYGGHIERLIGTMMGKVHLLPGTTFSDVQERGDLDPQKTAAMTLDEVERWLGHAVA 344
BLAST of mRNA_P-wetherbeei_contig54403.1.1 vs. uniprot
Match: A0A2A4FPD1_9SPHN (Integrase n=1 Tax=Rhizorhabdus dicambivorans TaxID=1850238 RepID=A0A2A4FPD1_9SPHN) HSP 1 Score: 336 bits (862), Expect = 3.680e-111 Identity = 160/176 (90.91%), Postives = 170/176 (96.59%), Query Frame = 1
Query: 1 LSLIQIDHTLVDVIVVDSETRAPIQRPWLTLAIDVCTRCVAGFHLSLEPPSATSVALCLSHGALAKDSWLAERRIDAVWPVRGIPERLHLDNAKEFRSEALKRGCEQYGIAIDHRPVRTPHYGGHIERLIGTMMGKVHLLPGTTFSNLQAKGDLIPDKTAAMTLEEVERWLGHAIA 528
LSLIQIDHTLVDVIVVDSETRAPIQRPWLTLAIDVCTRCVAGFHLSLEPPSATSVA+CL+H AL K++WLA R IDAVWPVRG+PERLHLDNAKEFRSEALKRGCEQYGIAIDHRPVRTPHYGGHIERLIGTMMGKVHLLPGTTFSN++ KGDL P+K+AAMTL+EVERWLGHAIA
Sbjct: 169 LSLIQIDHTLVDVIVVDSETRAPIQRPWLTLAIDVCTRCVAGFHLSLEPPSATSVAMCLAHAALGKETWLATRDIDAVWPVRGVPERLHLDNAKEFRSEALKRGCEQYGIAIDHRPVRTPHYGGHIERLIGTMMGKVHLLPGTTFSNIREKGDLNPEKSAAMTLDEVERWLGHAIA 344
BLAST of mRNA_P-wetherbeei_contig54403.1.1 vs. uniprot
Match: A0A6N7H5F5_9HYPH (DDE-type integrase/transposase/recombinase (Fragment) n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A6N7H5F5_9HYPH) HSP 1 Score: 330 bits (847), Expect = 4.130e-109 Identity = 161/176 (91.48%), Postives = 168/176 (95.45%), Query Frame = 1
Query: 1 LSLIQIDHTLVDVIVVDSETRAPIQRPWLTLAIDVCTRCVAGFHLSLEPPSATSVALCLSHGALAKDSWLAERRIDAVWPVRGIPERLHLDNAKEFRSEALKRGCEQYGIAIDHRPVRTPHYGGHIERLIGTMMGKVHLLPGTTFSNLQAKGDLIPDKTAAMTLEEVERWLGHAIA 528
LSLIQIDHTLVDVIVVDS TR PIQRPWLTLAIDVCTRCVAGFHLSLEPPSATSVALCLSH L K+SWLAER IDAVWPVRGIPERLHLDNAKEFRSEALKRGCEQYGIAID+RPVRTPHYGGHIERLIGTMMGKVHLLPGTTFS+++AKG+L P KTAAMTL+EVERWLGHAIA
Sbjct: 156 LSLIQIDHTLVDVIVVDSVTRTPIQRPWLTLAIDVCTRCVAGFHLSLEPPSATSVALCLSHVVLTKESWLAERGIDAVWPVRGIPERLHLDNAKEFRSEALKRGCEQYGIAIDYRPVRTPHYGGHIERLIGTMMGKVHLLPGTTFSDIRAKGNLNPYKTAAMTLDEVERWLGHAIA 331
BLAST of mRNA_P-wetherbeei_contig54403.1.1 vs. uniprot
Match: A0A2S0QYG0_9RHOO (Integrase n=5 Tax=Proteobacteria TaxID=1224 RepID=A0A2S0QYG0_9RHOO) HSP 1 Score: 326 bits (836), Expect = 2.710e-107 Identity = 156/176 (88.64%), Postives = 164/176 (93.18%), Query Frame = 1
Query: 1 LSLIQIDHTLVDVIVVDSETRAPIQRPWLTLAIDVCTRCVAGFHLSLEPPSATSVALCLSHGALAKDSWLAERRIDAVWPVRGIPERLHLDNAKEFRSEALKRGCEQYGIAIDHRPVRTPHYGGHIERLIGTMMGKVHLLPGTTFSNLQAKGDLIPDKTAAMTLEEVERWLGHAIA 528
LSL+QIDHTLVDVIVVDS+TR PIQRPWLTLAIDVCTRCVAG HLSLEPPSATSVALC+S AL KD+WLAER ID WPV GIPERLHLDNAKEFRSEAL+RGCEQ+GIAIDHRPVRTPHYGGHIERLIGTMMGKVHLLPGTTFSN+QAKGDL P K+A MTLEEVERWLGHAIA
Sbjct: 170 LSLVQIDHTLVDVIVVDSQTREPIQRPWLTLAIDVCTRCVAGLHLSLEPPSATSVALCISQAALPKDAWLAERGIDGAWPVHGIPERLHLDNAKEFRSEALRRGCEQHGIAIDHRPVRTPHYGGHIERLIGTMMGKVHLLPGTTFSNVQAKGDLDPSKSAVMTLEEVERWLGHAIA 345 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54403.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig54403.1.1 >prot_P-wetherbeei_contig54403.1.1 ID=prot_P-wetherbeei_contig54403.1.1|Name=mRNA_P-wetherbeei_contig54403.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=176bp LSLIQIDHTLVDVIVVDSETRAPIQRPWLTLAIDVCTRCVAGFHLSLEPPback to top mRNA from alignment at P-wetherbeei_contig54403:3..530- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig54403.1.1 ID=mRNA_P-wetherbeei_contig54403.1.1|Name=mRNA_P-wetherbeei_contig54403.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=528bp|location=Sequence derived from alignment at P-wetherbeei_contig54403:3..530- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig54403:3..530- >mRNA_P-wetherbeei_contig54403.1.1 ID=mRNA_P-wetherbeei_contig54403.1.1|Name=mRNA_P-wetherbeei_contig54403.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=528bp|location=Sequence derived from alignment at P-wetherbeei_contig54403:3..530- (Phaeothamnion wetherbeei SAG_119_79)back to top |