mRNA_P-wetherbeei_contig54389.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54389.1.1
Unique NamemRNA_P-wetherbeei_contig54389.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54389.1.1 vs. uniprot
Match: UPI0019979DB2 (Uncharacterized protein n=1 Tax=Prolixibacteraceae bacterium TaxID=2053594 RepID=UPI0019979DB2)

HSP 1 Score: 93.6 bits (231), Expect = 1.880e-22
Identity = 46/57 (80.70%), Postives = 47/57 (82.46%), Query Frame = 1
Query:    1 TDPSVNILWVVMTTGTSSRFGISYKAGNYYEVLSDALIGATHELMTNPGFRKALTAK 171
            TD    ILW V T GTSSRFGISYKA NYYEVLSDALIGATHEL+ NPGFRKALT K
Sbjct:  144 TDADGKILWAVATGGTSSRFGISYKAANYYEVLSDALIGATHELVRNPGFRKALTQK 200          
BLAST of mRNA_P-wetherbeei_contig54389.1.1 vs. uniprot
Match: UPI0019CE54D2 (Uncharacterized protein n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=UPI0019CE54D2)

HSP 1 Score: 78.2 bits (191), Expect = 1.970e-16
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 1
Query:   19 ILWVVMTTGTSSRFGISYKAGNYYEVLSDALIGATHELMTNPGFRKALTAK 171
            ILW  MT+G SSR+GI+YKA NYYEVLSDAL+GATHEL+ NP F++ L  K
Sbjct:  155 ILWSFMTSGNSSRYGITYKADNYYEVLSDALVGATHELLRNPKFKEVLNRK 205          
BLAST of mRNA_P-wetherbeei_contig54389.1.1 vs. uniprot
Match: A0A4R0YRK2_9GAMM (Uncharacterized protein n=1 Tax=Dyella soli TaxID=522319 RepID=A0A4R0YRK2_9GAMM)

HSP 1 Score: 55.1 bits (131), Expect = 1.150e-7
Identity = 24/57 (42.11%), Postives = 38/57 (66.67%), Query Frame = 1
Query:    1 TDPSVNILWVVMTTGTSSRFGISYKAGNYYEVLSDALIGATHELMTNPGFRKALTAK 171
            TD +  +LW  +  G ++ FG SYKA NYYE LS+A++  ++ ++ +PGF  AL A+
Sbjct:  140 TDAAGKVLWQGIAGGGATNFGRSYKADNYYETLSNAVLKTSNSMLNSPGFHHALEAR 196          
BLAST of mRNA_P-wetherbeei_contig54389.1.1 vs. uniprot
Match: A0A6I1KDQ4_9DELT (Uncharacterized protein n=1 Tax=Geobacteraceae bacterium TaxID=2282154 RepID=A0A6I1KDQ4_9DELT)

HSP 1 Score: 54.3 bits (129), Expect = 2.270e-7
Identity = 26/47 (55.32%), Postives = 32/47 (68.09%), Query Frame = 1
Query:   22 LWVVMTTGTSSRFGISYKAGNYYEVLSDALIGATHELMTNPGFRKAL 162
            LW  M +G+S RFG SYK  NYYE LSDA + A H L+ +  FRKA+
Sbjct:  147 LWQGMMSGSSRRFGRSYKPENYYETLSDAYLEAVHGLLKSEEFRKAV 193          
BLAST of mRNA_P-wetherbeei_contig54389.1.1 vs. uniprot
Match: A0A8J8HL87_9BACT (Uncharacterized protein n=1 Tax=Geothrix sp. TaxID=1962974 RepID=A0A8J8HL87_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 3.680e-6
Identity = 23/51 (45.10%), Postives = 35/51 (68.63%), Query Frame = 1
Query:   19 ILWVVMTTGTSSRFGISYKAGNYYEVLSDALIGATHELMTNPGFRKALTAK 171
            +LW  +  G ++RFG SYKA NY+EVLSD+L+ A   L+++  F +AL  +
Sbjct:  151 VLWKGLAVGQATRFGRSYKAENYHEVLSDSLVEAVSHLLSDKTFLEALAGQ 201          
BLAST of mRNA_P-wetherbeei_contig54389.1.1 vs. uniprot
Match: A0A154QZW9_9GAMM (Uncharacterized protein n=3 Tax=Rhodanobacter TaxID=75309 RepID=A0A154QZW9_9GAMM)

HSP 1 Score: 50.8 bits (120), Expect = 4.450e-6
Identity = 23/51 (45.10%), Postives = 34/51 (66.67%), Query Frame = 1
Query:   10 SVNILWVVMTTGTSSRFGISYKAGNYYEVLSDALIGATHELMTNPGFRKAL 162
            S  +LW  +  G ++ FG SYKA NYYE LS+A++  ++ L+ +PGF  AL
Sbjct:  142 SGKVLWQGIAGGGATNFGRSYKADNYYETLSNAVLKLSNSLLNSPGFHGAL 192          
BLAST of mRNA_P-wetherbeei_contig54389.1.1 vs. uniprot
Match: UPI001959716C (hypothetical protein n=1 Tax=Dyella kyungheensis TaxID=1242174 RepID=UPI001959716C)

HSP 1 Score: 50.8 bits (120), Expect = 4.450e-6
Identity = 22/51 (43.14%), Postives = 34/51 (66.67%), Query Frame = 1
Query:   10 SVNILWVVMTTGTSSRFGISYKAGNYYEVLSDALIGATHELMTNPGFRKAL 162
            S  +LW  +  G ++ FG SYKA NYYE LS+A++  ++ ++ +PGF  AL
Sbjct:  142 SGKVLWQGIAGGGANNFGRSYKADNYYETLSNAVLKLSNSMLNSPGFHSAL 192          
BLAST of mRNA_P-wetherbeei_contig54389.1.1 vs. uniprot
Match: A0A0G9H2E9_9GAMM (Uncharacterized protein n=1 Tax=Dyella japonica DSM 16301 TaxID=1440762 RepID=A0A0G9H2E9_9GAMM)

HSP 1 Score: 50.4 bits (119), Expect = 6.200e-6
Identity = 22/56 (39.29%), Postives = 37/56 (66.07%), Query Frame = 1
Query:    1 TDPSVNILWVVMTTGTSSRFGISYKAGNYYEVLSDALIGATHELMTNPGFRKALTA 168
            T+ +  +LW  +  G ++ FG SYKA NYYE LS+A++  ++ ++ + GFR A+ A
Sbjct:  139 TNQAGKVLWQGVAGGGANNFGRSYKADNYYETLSNAVLKLSNSMLNSQGFRSAMLA 194          
BLAST of mRNA_P-wetherbeei_contig54389.1.1 vs. uniprot
Match: A0A075K404_9GAMM (Uncharacterized protein n=4 Tax=Dyella TaxID=231454 RepID=A0A075K404_9GAMM)

HSP 1 Score: 48.1 bits (113), Expect = 4.510e-5
Identity = 21/54 (38.89%), Postives = 35/54 (64.81%), Query Frame = 1
Query:    1 TDPSVNILWVVMTTGTSSRFGISYKAGNYYEVLSDALIGATHELMTNPGFRKAL 162
            T+ +  +LW  +  G ++ FG SYKA NYYE LS+A++  ++ ++ + GF  AL
Sbjct:  139 TNATGKVLWQGVAGGGATNFGRSYKADNYYETLSNAVLKLSNSMLNSQGFHNAL 192          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54389.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
UPI0019979DB21.880e-2280.70Uncharacterized protein n=1 Tax=Prolixibacteraceae... [more]
UPI0019CE54D21.970e-1668.63Uncharacterized protein n=1 Tax=Cytophagales bacte... [more]
A0A4R0YRK2_9GAMM1.150e-742.11Uncharacterized protein n=1 Tax=Dyella soli TaxID=... [more]
A0A6I1KDQ4_9DELT2.270e-755.32Uncharacterized protein n=1 Tax=Geobacteraceae bac... [more]
A0A8J8HL87_9BACT3.680e-645.10Uncharacterized protein n=1 Tax=Geothrix sp. TaxID... [more]
A0A154QZW9_9GAMM4.450e-645.10Uncharacterized protein n=3 Tax=Rhodanobacter TaxI... [more]
UPI001959716C4.450e-643.14hypothetical protein n=1 Tax=Dyella kyungheensis T... [more]
A0A0G9H2E9_9GAMM6.200e-639.29Uncharacterized protein n=1 Tax=Dyella japonica DS... [more]
A0A075K404_9GAMM4.510e-538.89Uncharacterized protein n=4 Tax=Dyella TaxID=23145... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54389contigP-wetherbeei_contig54389:3..176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size174
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size174
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186812.7812812-CDS-P-wetherbeei_contig54389:2..1761683186812.7812812-CDS-P-wetherbeei_contig54389:2..176Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54389 3..176 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54389.1.1prot_P-wetherbeei_contig54389.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54389 3..176 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54389.1.1

>prot_P-wetherbeei_contig54389.1.1 ID=prot_P-wetherbeei_contig54389.1.1|Name=mRNA_P-wetherbeei_contig54389.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=58bp
TDPSVNILWVVMTTGTSSRFGISYKAGNYYEVLSDALIGATHELMTNPGF
RKALTAK*
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mRNA from alignment at P-wetherbeei_contig54389:3..176+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54389.1.1 ID=mRNA_P-wetherbeei_contig54389.1.1|Name=mRNA_P-wetherbeei_contig54389.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=174bp|location=Sequence derived from alignment at P-wetherbeei_contig54389:3..176+ (Phaeothamnion wetherbeei SAG_119_79)
ACGGATCCATCCGTCAATATTCTATGGGTCGTGATGACAACCGGAACGTC CAGCCGCTTCGGTATTTCCTACAAGGCGGGCAACTATTACGAGGTGCTGA GTGACGCGCTGATCGGGGCGACCCATGAGCTGATGACCAACCCCGGTTTC CGCAAGGCACTGACTGCAAAGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54389:3..176+

>mRNA_P-wetherbeei_contig54389.1.1 ID=mRNA_P-wetherbeei_contig54389.1.1|Name=mRNA_P-wetherbeei_contig54389.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=174bp|location=Sequence derived from alignment at P-wetherbeei_contig54389:3..176+ (Phaeothamnion wetherbeei SAG_119_79)
ACGGATCCATCCGTCAATATTCTATGGGTCGTGATGACAACCGGAACGTC
CAGCCGCTTCGGTATTTCCTACAAGGCGGGCAACTATTACGAGGTGCTGA
GTGACGCGCTGATCGGGGCGACCCATGAGCTGATGACCAACCCCGGTTTC
CGCAAGGCACTGACTGCAAAGTAA
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