mRNA_P-wetherbeei_contig54384.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54384.1.1
Unique NamemRNA_P-wetherbeei_contig54384.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig54384.1.1 vs. uniprot
Match: A0A440H7P8_9HYPH (Type IV secretion system protein VirD4 n=1 Tax=Mesorhizobium sp. TaxID=1871066 RepID=A0A440H7P8_9HYPH)

HSP 1 Score: 54.3 bits (129), Expect = 6.220e-6
Identity = 38/108 (35.19%), Postives = 56/108 (51.85%), Query Frame = 1 
Query:   73 KLVLSLWWTFTKAVPGAWGWI----RGQEKESPTHGNAGFASMKQLAADGHATPGGFLYGIQDK-KRVFGKLEACTHFFGKRGEGKSQTMGANLSYMTTLPTKPDILI 381
            K VL+   T  + + G+W ++    + ++K+ PTHGNA FAS K L   G+  P GFL  +  K +RVF + E         G GKSQ     +S +  L  +PD L+
Sbjct:    8 KAVLN---TPVRCIWGSWNFLAAVKKWRDKDKPTHGNASFASDKDLKKSGYFRPRGFLMCVTGKGQRVFTRDERSVLVMAPPGAGKSQHF---ISDLRVLMERPDALL 109
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BLAST of mRNA_P-wetherbeei_contig54384.1.1 vs. uniprot
Match: UPI001CD0580F (type IV secretory system conjugative DNA transfer family protein n=1 Tax=Mesorhizobium sp. BR-1-1-10 TaxID=2876660 RepID=UPI001CD0580F)

HSP 1 Score: 53.5 bits (127), Expect = 1.160e-5
Identity = 40/132 (30.30%), Postives = 65/132 (49.24%), Query Frame = 1 
Query:   13 MRSVLKGIWLPFEWAFFAAGKLVLSLWWTFTKAVPGAWGWI----RGQEKESPTHGNAGFASMKQLAADGHATPGGFLYGIQDK-KRVFGKLEACTHFFGKRGEGKSQTMGANLSYMTTLPTK--PDILIND 387
            ++S+ K +W    WA+    + + + +     ++ G+W       + ++K+ PTHGNA FA+ K+L   G+  P GFL  +  K KRVF + E         G GKSQ   A+L  +   P    P ++I D
Sbjct:    7 IKSLFKVLW----WAWITILRCIEAAFNFTVWSIWGSWNAAAALRKWRDKDKPTHGNASFATDKELKKRGYFQPKGFLMCVTGKGKRVFTRDERSVLIMAPPGAGKSQHFIADLRVLLERPYAQLPFLMIGD 134
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BLAST of mRNA_P-wetherbeei_contig54384.1.1 vs. uniprot
Match: A0A4R9QA38_9HYPH (Type IV secretion system protein VirD4 n=2 Tax=Mesorhizobium TaxID=68287 RepID=A0A4R9QA38_9HYPH)

HSP 1 Score: 53.1 bits (126), Expect = 1.580e-5
Identity = 33/85 (38.82%), Postives = 47/85 (55.29%), Query Frame = 1 
Query:  142 QEKESPTHGNAGFASMKQLAADGHATPGGFLYGIQDK-KRVFGKLEACTHFFGKRGEGKSQTMGANLSYMTTLPTK--PDILIND 387
            ++ + PTHGNA FAS ++L   G+  P GFL G+  K KRVF + E         G GKSQ + A+L  + T   +  P ++I D
Sbjct:   54 RDADKPTHGNASFASDRELKKRGYLRPVGFLMGVTKKGKRVFTRDERSVLIMAPPGAGKSQHIIADLRMVLTRDKERLPFLVIGD 138
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54384.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A440H7P8_9HYPH6.220e-635.19Type IV secretion system protein VirD4 n=1 Tax=Mes... [more]
UPI001CD0580F1.160e-530.30type IV secretory system conjugative DNA transfer ... [more]
A0A4R9QA38_9HYPH1.580e-538.82Type IV secretion system protein VirD4 n=2 Tax=Mes... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54384contigP-wetherbeei_contig54384:134..526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1220582.RRU01S_04_01690
PFAMsT4SS-DNA_transf
Model size393
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.77e-11
EggNOG OGsCOG3505@1|root,COG3505@2|Bacteria,1NVD8@1224|Proteobacteria,2UR82@28211|Alphaproteobacteria
DescriptionTraM recognition site of TraD and TraG
Cds size381
COG categoryU
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186812.6839406-UTR-P-wetherbeei_contig54384:133..1451683186812.6839406-UTR-P-wetherbeei_contig54384:133..145Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig54384 134..145 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186812.6972759-CDS-P-wetherbeei_contig54384:145..5261683186812.6972759-CDS-P-wetherbeei_contig54384:145..526Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54384 146..526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54384.1.1prot_P-wetherbeei_contig54384.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54384 146..526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54384.1.1

>prot_P-wetherbeei_contig54384.1.1 ID=prot_P-wetherbeei_contig54384.1.1|Name=mRNA_P-wetherbeei_contig54384.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=127bp
MRSVLKGIWLPFEWAFFAAGKLVLSLWWTFTKAVPGAWGWIRGQEKESPT
HGNAGFASMKQLAADGHATPGGFLYGIQDKKRVFGKLEACTHFFGKRGEG
KSQTMGANLSYMTTLPTKPDILINDPA
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mRNA from alignment at P-wetherbeei_contig54384:134..526+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54384.1.1 ID=mRNA_P-wetherbeei_contig54384.1.1|Name=mRNA_P-wetherbeei_contig54384.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=393bp|location=Sequence derived from alignment at P-wetherbeei_contig54384:134..526+ (Phaeothamnion wetherbeei SAG_119_79)
GTAACACGAGCGATGCGGTCTGTCCTGAAAGGCATTTGGCTTCCCTTTGA
GTGGGCCTTCTTCGCAGCCGGCAAGCTCGTGCTGTCGCTATGGTGGACTT
TCACCAAAGCTGTGCCAGGCGCATGGGGGTGGATTAGGGGGCAAGAGAAG
GAGTCACCGACGCACGGCAACGCTGGCTTCGCATCGATGAAACAACTCGC
GGCCGATGGGCACGCGACGCCCGGGGGATTTCTCTACGGCATCCAGGATA
AGAAGCGTGTCTTCGGAAAGCTGGAGGCCTGCACGCACTTCTTTGGCAAG
CGCGGTGAGGGTAAGAGTCAGACGATGGGAGCAAACCTCTCCTACATGAC
GACGCTTCCGACAAAGCCGGACATCCTCATCAACGACCCTGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54384:134..526+

>mRNA_P-wetherbeei_contig54384.1.1 ID=mRNA_P-wetherbeei_contig54384.1.1|Name=mRNA_P-wetherbeei_contig54384.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=381bp|location=Sequence derived from alignment at P-wetherbeei_contig54384:134..526+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGTCTGTCCTGAAAGGCATTTGGCTTCCCTTTGAGTGGGCCTTCTT
CGCAGCCGGCAAGCTCGTGCTGTCGCTATGGTGGACTTTCACCAAAGCTG
TGCCAGGCGCATGGGGGTGGATTAGGGGGCAAGAGAAGGAGTCACCGACG
CACGGCAACGCTGGCTTCGCATCGATGAAACAACTCGCGGCCGATGGGCA
CGCGACGCCCGGGGGATTTCTCTACGGCATCCAGGATAAGAAGCGTGTCT
TCGGAAAGCTGGAGGCCTGCACGCACTTCTTTGGCAAGCGCGGTGAGGGT
AAGAGTCAGACGATGGGAGCAAACCTCTCCTACATGACGACGCTTCCGAC
AAAGCCGGACATCCTCATCAACGACCCTGCC
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