mRNA_P-wetherbeei_contig12419.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12419.1.1
Unique NamemRNA_P-wetherbeei_contig12419.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12419.1.1 vs. uniprot
Match: D7G3Y9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3Y9_ECTSI)

HSP 1 Score: 235 bits (599), Expect = 1.250e-66
Identity = 125/256 (48.83%), Postives = 167/256 (65.23%), Query Frame = 1
Query:    1 RYVQDQMVWISNHQYAAAKRAGVLAPFAKFPGLVSRMLSALAAGRSAGRSNSXXXXXXXXXXXADVAVAAIALQRLAATVFQHLEGVAQRDPKYCHVVRLENYYFFSQSVGPQGAKCLENAVAQADAAFETATAAYLQWLASYQFPYLTQFFARIEDLVARCGAADVAFHENKKSLEAVLRKHGQEATIVEGLRATHARLVKHISRESGLLALLWDRLSDTLFAMFSRYEELCTVCYGHAMAPGASDVRRLASDVG 768
            ++++DQ+ WI   Q   AK+AG+LA  AK P L+ R+ +A  A     R N+                A  A QRL   +F+H+E VA R+PKY H+VRLENY+FF+ ++ P   + L   V QAD   E +T  YL+WL  YQFP LTQFFA++EDLV   GAADV +HE K++LEA L++ G    I EGL+ATH R+VKH+++E  LL  LW +LSDTLFAMFSRYEELCT+CY H + PGA  V+R A+++G
Sbjct:  856 KFIKDQVSWIQA-QRGDAKKAGILAAVAKAPTLLKRLQAASNAAVVGTRGNAKAKEQDEGGE------AQKAYQRLVIALFEHVEEVASRNPKYEHMVRLENYHFFAATMRPLKVQVLSEYVEQADKLEEVSTTRYLEWLVGYQFPVLTQFFAKVEDLVMTVGAADVTYHEPKRNLEATLKRQGDMKVISEGLKATHQRMVKHVTKEGQLLGPLWAKLSDTLFAMFSRYEELCTLCYQHTLDPGAVAVKRAATEIG 1104          
BLAST of mRNA_P-wetherbeei_contig12419.1.1 vs. uniprot
Match: A0A835YUC5_9STRA (Exocyst complex component Sec3-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUC5_9STRA)

HSP 1 Score: 176 bits (445), Expect = 5.900e-46
Identity = 84/161 (52.17%), Postives = 115/161 (71.43%), Query Frame = 1
Query:  262 AQRDPKYCHVVRLENYYFFSQSVGPQGAKCLENAVAQADAAFETATAAYLQWLASYQFPYLTQFFARIEDLVARCGAADVAFHENKKSLEAVLRKHGQEATIVEGLRATHARLVKHISRESGLLALLWDRLSDTLFAMFSRYEELCTVCYGHAMAPGASDV 744
            AQ +PKY +V+++EN YFF  ++G +    LE+ V QA + F+T +  YL+W+   QFP+   FFARIE+LVA  GA DV +HE KK+L+A+L++H  E T+ +GL+  +AR+ KH+S+ES LL +LWD L+D LFA FSRYEELC VCYG  M P AS V
Sbjct:  787 AQANPKYANVIKMENLYFFKHTIGLRDVPVLEDYVLQASSNFDTTSQNYLEWVLRCQFPHAMAFFARIEELVASVGAQDVPYHEPKKNLDAMLKRHLDEKTVPDGLKLIYARMNKHLSKESCLLPVLWDHLNDMLFAQFSRYEELCHVCYGFKMVPSASQV 947          
BLAST of mRNA_P-wetherbeei_contig12419.1.1 vs. uniprot
Match: W7TS69_9STRA (Exocyst complex, component Exoc1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TS69_9STRA)

HSP 1 Score: 164 bits (416), Expect = 4.520e-42
Identity = 105/259 (40.54%), Postives = 142/259 (54.83%), Query Frame = 1
Query:    4 YVQDQMVWISNHQYAAAKRAGVLAPFAKFPGLVSRMLSALAAGRSAGRSNSXXXXXXXXXXXADVAVAAIALQRLAATVFQHLEGVAQR-DPKYCHVVRLENYYFFSQSVGPQ-----GAKCLENAVAQADAAFETATAAYLQWLASYQFPYLTQFFARIEDLVARCGAADVAFHENKKSLEAVLRKHGQEATIVEGLRATHARLVKHISRESGLLALLWDRLSDTLFAMFSRYEELCTVCYGHAMAPGASDVRRLASD 762
            +V DQ VWI NHQ    KRAGVLAPFAKFP  V R+  ALA G                     + +A  ALQ+L++++   LE ++ R D KY  VVRLENY+FF Q++ P+     G+  L + + QA AA+E A   Y  W   Y FP +T FF  I+DL+ + G  DV+ H  K +L  + ++      I + LR    RL KHIS +SGL   LWDR+S  L+  F RYE++   CY   + P A  VR+LA +
Sbjct: 1039 FVADQEVWI-NHQNPDIKRAGVLAPFAKFPIFVDRL--ALAVGGQM------------------IGIAEAALQQLSSSLLAWLERLSLRGDQKYADVVRLENYHFFVQTMSPRQQCLIGSDVLVSFIDQAQAAYEAAVQRYASWSLGYAFPEVTAFFGSIDDLIVKVGVGDVSIHVPKTALFKLTQEACSRKAIADSLRTAFRRLRKHISDDSGLFLPLWDRISLLLYQRFVRYEDVILQCYDVKLEPPAILVRQLAQE 1276          
BLAST of mRNA_P-wetherbeei_contig12419.1.1 vs. uniprot
Match: A0A7S2W0L8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W0L8_9STRA)

HSP 1 Score: 127 bits (319), Expect = 6.490e-31
Identity = 83/265 (31.32%), Postives = 131/265 (49.43%), Query Frame = 1
Query:    4 YVQDQMVWI-SNHQYAA-AKRAGVLAPFAKFPGLVSRMLSALAAGRSAGRSNSXXXXXXXXXXXADVAVAAIALQRLAATVFQHLEGVAQRDP---KYC-HVVRLENYYFFSQSV---GPQGAKCLENAVAQADAAFETATAAYLQWLASYQFPYLTQFFARIEDLVARCGAADVAFHENKKSLEAVLRKHGQEATIVEGLRATHARLVKHISRESGLLALLWDRLSDTLFAMFSRYEELCTVCYGHAMAPGASDVRRLASDVGG 771
            +V+DQ  WI +NH      KRAG++  FA+FP  +  ++    A R                  + + V +  LQ++A  +F  L+  A+RD    +Y  +V+R+EN YFF+QS+   GP+        ++ A A  +T+T +YL W+   +F  L   F+ I  +    G ADV  H  + +    L+K      + E ++  + R+ KH+S   GLL + W  L   L+  F R+E+L T CY H + P A DV R+A   GG
Sbjct:   17 WVEDQNKWIKTNHNVPLNGKRAGIITSFARFPSYLDHIMVCCKAARP----------ETYVPKLSAIKVTSYYLQKMAGALFASLQECAERDSTDQQYAANVMRMENSYFFTQSIKQRGPELITLFAKQISAASAICKTSTDSYLGWMIKREFKALHSLFSNISRIRRDVGDADVPIHVPRSTFVKTLQKESNRDVMKEKIQTIYGRMEKHLSEAGGLLPVAWKALVKVLYEWFGRWEKLSTQCYKHVLDPSAVDVVRIAKAAGG 271          
BLAST of mRNA_P-wetherbeei_contig12419.1.1 vs. uniprot
Match: A0A7S2LNF4_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LNF4_9STRA)

HSP 1 Score: 115 bits (287), Expect = 3.050e-25
Identity = 78/260 (30.00%), Postives = 127/260 (48.85%), Query Frame = 1
Query:    4 YVQDQMVWISNHQYAA--AKRAGVLAPFAKFPGLVSRMLSALAAGRSAGRSNSXXXXXXXXXXXADVAVAAIALQRLAATVFQHLEGVAQR---DPKYC-HVVRLENYYFFSQSVGPQGAKC---LENAVAQADAAFETATAAYLQWLASYQFPYLTQFFARIEDLVARCGAADVAFHENKKSLEAVLRKHGQEATIVEGLRATHARLVKHISRESGLLALLWDRLSDTLFAMFSRYEELCTVCYGHAMAPGASDVRRLA 756
            ++++Q+ WI  +       KRAG+ A  A+FP  +  +L    AGRS   + +           A + V +  LQ++A+ +F  L   A+R   D +Y   V+R+EN YFF+QS+  +G +     +  +  A    + +T AYL W+   +F  +   F+ I  +    G ADV  H  +      ++K   +  + E +   +AR+ KH+S   GLL + W  L   L+  F R+E+L T CY   + P A DV RLA
Sbjct:  266 WIEEQIKWIRTNPGVPQNGKRAGIFASVARFPSYLDHVLICCKAGRSQDYTPNL----------AKIKVVSYYLQKMASGLFASLNECAERETTDQQYAADVMRMENSYFFTQSIKQRGIELTSVFQKQITGASVICKQSTDAYLGWMIKREFKAMHSLFSNISRIRKDVGDADVPIHVPRAQFVRTIQKESSKEIMKEKIGVVYARMEKHLSDGGGLLPVAWKALVKVLYEWFGRWEKLSTSCYKFILEPSAIDVVRLA 515          
BLAST of mRNA_P-wetherbeei_contig12419.1.1 vs. uniprot
Match: A0A6U3ZCN9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3ZCN9_9STRA)

HSP 1 Score: 107 bits (266), Expect = 3.670e-24
Identity = 65/192 (33.85%), Postives = 98/192 (51.04%), Query Frame = 1
Query:  217 LQRLAATVFQHLEGVAQR---DPKYC-HVVRLENYYFFSQSV---GPQGAKCLENAVAQADAAFETATAAYLQWLASYQFPYLTQFFARIEDLVARCGAADVAFHENKKSLEAVLRKHGQEATIVEGLRATHARLVKHISRESGLLALLWDRLSDTLFAMFSRYEELCTVCYGHAMAPGASDVRRLASDVGG 771
            LQ++A  +F  L+  A+R   D +Y  +V+R+EN YFF+QSV   GP+        +  A +  + +T AYL W+   +F  L   F+ I  +    G ADV  H  + +    L+K      + E +   +AR+ KH+S   GLL + W  L   L+  F R+E+L T CY   + P A DV R+A   GG
Sbjct:    3 LQKMAGALFSSLQQCAERETTDKQYAANVMRMENSYFFTQSVKQRGPEMTTLFAKQITAASSICKQSTDAYLGWMIKREFKALHSLFSNISRIRRDVGDADVPIHVPRATFVKTLQKESNRDVMKEKIGIIYARMEKHLSEAGGLLPVAWKALVKVLYEWFGRWEKLSTQCYKFGLEPSAVDVVRIAKAAGG 194          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12419.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G3Y9_ECTSI1.250e-6648.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YUC5_9STRA5.900e-4652.17Exocyst complex component Sec3-domain-containing p... [more]
W7TS69_9STRA4.520e-4240.54Exocyst complex, component Exoc1 n=2 Tax=Monodopsi... [more]
A0A7S2W0L8_9STRA6.490e-3131.32Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S2LNF4_9STRA3.050e-2530.00Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A6U3ZCN9_9STRA3.670e-2433.85Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12419contigP-wetherbeei_contig12419:338..1498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G3Y9
PFAMsSec3_C
Model size879
Max annot lvl2759|Eukaryota
KEGG koko:K18412,ko:K19983
Hectar predicted targeting categorymitochondrion
GOsGO:0000145,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0005938,GO:0006810,GO:0006887,GO:0006892,GO:0006893,GO:0008104,GO:0008150,GO:0008289,GO:0009987,GO:0016020,GO:0016192,GO:0017016,GO:0017048,GO:0017049,GO:0019899,GO:0031267,GO:0031503,GO:0032940,GO:0032991,GO:0033036,GO:0034613,GO:0034629,GO:0035091,GO:0043167,GO:0043168,GO:0044424,GO:0044444,GO:0044448,GO:0044464,GO:0046903,GO:0048193,GO:0051020,GO:0051179,GO:0051234,GO:0051601,GO:0051641,GO:0070727,GO:0071944,GO:0098876,GO:0099023,GO:0099568,GO:1901981,GO:1902936
Exons2
Evalue8.57e-65
EggNOG OGsKOG2148@1|root,KOG2148@2759|Eukaryota
Descriptionexocyst localization
Cds size861
COG categoryF
BRITEko00000,ko03019,ko03036,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185948.4632397-CDS-P-wetherbeei_contig12419:337..8441683185948.4632397-CDS-P-wetherbeei_contig12419:337..844Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12419 338..844 -
1683185948.4735184-CDS-P-wetherbeei_contig12419:1126..14801683185948.4735184-CDS-P-wetherbeei_contig12419:1126..1480Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12419 1127..1480 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185948.4824002-UTR-P-wetherbeei_contig12419:1480..14981683185948.4824002-UTR-P-wetherbeei_contig12419:1480..1498Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12419 1481..1498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12419.1.1prot_P-wetherbeei_contig12419.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12419 338..1480 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12419.1.1

>prot_P-wetherbeei_contig12419.1.1 ID=prot_P-wetherbeei_contig12419.1.1|Name=mRNA_P-wetherbeei_contig12419.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=287bp
MVWISNHQYAAAKRAGVLAPFAKFPGLVSRMLSALAAGRSAGRSNSGGGG
GGRADSEADVAVAAIALQRLAATVFQHLEGVAQRDPKYCHVVRLENYYFF
SQSVGPQGAKCLENAVAQADAAFETATAAYLQWLASYQFPYLTQFFARIE
DLVARCGAADVAFHENKKSLEAVLRKHGQEATIVEGLRATHARLVKHISR
ESGLLALLWDRLSDTLFAMFSRYEELCTVCYGHAMAPGASDVRRLASDVG
GGGGGYDGAASENMASNRSDAEEMSATTSPRSVGSMS
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mRNA from alignment at P-wetherbeei_contig12419:338..1498-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12419.1.1 ID=mRNA_P-wetherbeei_contig12419.1.1|Name=mRNA_P-wetherbeei_contig12419.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1161bp|location=Sequence derived from alignment at P-wetherbeei_contig12419:338..1498- (Phaeothamnion wetherbeei SAG_119_79)
AGGTACGTGCAAGACCAGATGGTGTGGATTTCTAACCACCAGTACGCCGC CGCCAAGCGCGCCGGCGTCCTCGCGCCCTTTGCCAAGTTCCCGGGCCTCG TCTCCCGAATGCTCTCCGCGCTCGCGGCGGGCCGCAGCGCCGGCCGCAGC AATAGCGGCGGCGGCGGCGGCGGCCGCGCGGACAGCGAAGCCGATGTGGC GGTGGCGGCGATCGCGTTGCAGCGGCTGGCGGCGACGGTGTTTCAGCACC TGGAGGGCGTGGCGCAGCGGGATCCCAAGTACTGCCACGTGGTGCGGCTG GAGAACTACTACTTCTTTTCGCAGTCGGTGGGGCCGCAGGGCGCCAAGTG CCTCGAGAACGCCGTGGCGCAGGTGAGGCGCCGGGAGAAGGATAGGTGCT GCAGGGCTTTGCGGTCTTTTCCTTTTCTTTCGCTCTGCTTCTATTCCATC TAGTTGACTGGCTTGCTTCAATGTGCGATCGCATCGCTGTCCAGGCGGAA CATGGGTCGAACTCGCACTTCTGACCAATGCTGCTCCTTCCCGGGTTCCA TGTGCTGCCGGTGTCTTCTGTGGCGCCGCGCTCCGCCTCTGCCTCCGCTG CCGCAACTGCCTTCCACCGCCATGCGCCGCTTCCGCCACCTCCCCTGTCG ATAGGCCGACGCGGCGTTCGAGACGGCGACGGCGGCCTACCTCCAATGGC TGGCGAGCTACCAGTTCCCCTACCTGACGCAGTTCTTCGCCCGCATCGAA GACCTCGTGGCGCGCTGCGGCGCGGCCGACGTGGCGTTCCACGAGAACAA AAAGTCACTGGAGGCTGTCCTGCGAAAGCACGGCCAGGAGGCGACGATTG TGGAAGGTCTGCGGGCGACGCACGCCCGGCTCGTCAAGCACATCTCGCGC GAGTCGGGCCTGCTGGCGCTGCTCTGGGACCGGCTGAGCGACACGCTCTT CGCGATGTTCTCGCGCTATGAGGAGCTCTGCACCGTCTGCTACGGGCATG CCATGGCGCCAGGCGCGTCCGATGTCCGGCGGCTGGCCAGCGACGTCGGC GGCGGCGGCGGCGGTTACGACGGCGCAGCGTCGGAGAACATGGCCAGCAA CCGCTCGGACGCCGAGGAGATGAGTGCGACAACGTCGCCGCGGTCGGTCG GCTCAATGTCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12419:338..1498-

>mRNA_P-wetherbeei_contig12419.1.1 ID=mRNA_P-wetherbeei_contig12419.1.1|Name=mRNA_P-wetherbeei_contig12419.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=861bp|location=Sequence derived from alignment at P-wetherbeei_contig12419:338..1498- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGTGGATTTCTAACCACCAGTACGCCGCCGCCAAGCGCGCCGGCGT
CCTCGCGCCCTTTGCCAAGTTCCCGGGCCTCGTCTCCCGAATGCTCTCCG
CGCTCGCGGCGGGCCGCAGCGCCGGCCGCAGCAATAGCGGCGGCGGCGGC
GGCGGCCGCGCGGACAGCGAAGCCGATGTGGCGGTGGCGGCGATCGCGTT
GCAGCGGCTGGCGGCGACGGTGTTTCAGCACCTGGAGGGCGTGGCGCAGC
GGGATCCCAAGTACTGCCACGTGGTGCGGCTGGAGAACTACTACTTCTTT
TCGCAGTCGGTGGGGCCGCAGGGCGCCAAGTGCCTCGAGAACGCCGTGGC
GCAGGCCGACGCGGCGTTCGAGACGGCGACGGCGGCCTACCTCCAATGGC
TGGCGAGCTACCAGTTCCCCTACCTGACGCAGTTCTTCGCCCGCATCGAA
GACCTCGTGGCGCGCTGCGGCGCGGCCGACGTGGCGTTCCACGAGAACAA
AAAGTCACTGGAGGCTGTCCTGCGAAAGCACGGCCAGGAGGCGACGATTG
TGGAAGGTCTGCGGGCGACGCACGCCCGGCTCGTCAAGCACATCTCGCGC
GAGTCGGGCCTGCTGGCGCTGCTCTGGGACCGGCTGAGCGACACGCTCTT
CGCGATGTTCTCGCGCTATGAGGAGCTCTGCACCGTCTGCTACGGGCATG
CCATGGCGCCAGGCGCGTCCGATGTCCGGCGGCTGGCCAGCGACGTCGGC
GGCGGCGGCGGCGGTTACGACGGCGCAGCGTCGGAGAACATGGCCAGCAA
CCGCTCGGACGCCGAGGAGATGAGTGCGACAACGTCGCCGCGGTCGGTCG
GCTCAATGTCA
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