mRNA_P-wetherbeei_contig54013.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig54013.1.1
Unique NamemRNA_P-wetherbeei_contig54013.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig54013.1.1 vs. uniprot
Match: A0A450S405_9GAMM (WD40 repeat n=1 Tax=Candidatus Kentron sp. FW TaxID=2126338 RepID=A0A450S405_9GAMM)

HSP 1 Score: 58.5 bits (140), Expect = 8.160e-7
Identity = 38/90 (42.22%), Postives = 51/90 (56.67%), Query Frame = 1
Query:  274 QRGSPAAVDILGGGSDVLLALAFSPDGRRLLETSTDGFARVWDLENAT-------LVTRFRIGSSGAFNEG------SAAFSPDGSPILT 504
            Q  + A + +L G SDV+L+LAFSPDG+RLL  S DG AR+WDL  A        L T  + G +     G      + AFSPDG+ ++T
Sbjct:  101 QAPADAPLRLLEGHSDVILSLAFSPDGQRLLSGSGDGTARLWDLSTALEAGVSTPLDTGLQTGKTLKILRGHEAPIYAVAFSPDGARLVT 190          
BLAST of mRNA_P-wetherbeei_contig54013.1.1 vs. uniprot
Match: A0A0S8FCX7_9GAMM (P/Homo B domain-containing protein n=1 Tax=Gammaproteobacteria bacterium SG8_31 TaxID=1703405 RepID=A0A0S8FCX7_9GAMM)

HSP 1 Score: 57.0 bits (136), Expect = 2.860e-6
Identity = 54/163 (33.13%), Postives = 69/163 (42.33%), Query Frame = 1
Query:   52 NRSILSLAFSPNGQFVLLGTTGARADVWSVTSGGGPAESYAFSDLSSKAVTEIAMSPDLSRIMMADEAGGIFGFQRGSPAAVDILG--GGSDVLLALAFSPDGRRLLETSTDGFARVWDLENATLV-TRFRIGSSGAFNEGSAAFSPDGSPILTRPPGAARLW 531
            N   +S AF   G  V+ G  G  A VW +   G      A +D         A+SP + +I   D  G +       P + D     G +  + ALA+SPDG RL+    DG   +WD   AT V  RF  GS      GS A + D   ILT     ARLW
Sbjct:  989 NDKPVSRAFDAGGTRVVTGRGGTMARVWQI---GTERPLPAPADSRMAIARVFALSPVIDQITAGDLNGAVQFLDGSGPWSQDSERPPGHAGPITALAYSPDGSRLVSVGADGSVLLWDPMLATTVGERFHHGSGRV---GSVAIAADNRSILTGGELGARLW 1145          
BLAST of mRNA_P-wetherbeei_contig54013.1.1 vs. uniprot
Match: A0A496B0Q7_9BACT (Uncharacterized protein n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A496B0Q7_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 9.190e-6
Identity = 47/177 (26.55%), Postives = 73/177 (41.24%), Query Frame = 1
Query:    1 VWNIAESRRVRTITYDDNRSILSLAFSPNGQFVLLGTTGARADVWSVTSGGGPAESYAFSDLSSKAVTEIAMSPDLSRIMMADEAGGIFGFQRGSPAAVDILGGGSDVLLALAFSPDGRRLLETSTDGFARVWDLENATLVTRFRIGSSGAFNEGSAAFSPDGSPILTRPPGAARLW 531
            +W++A+      +    N  + S A  PNG+ +L         VW +         +   +  S+   +   +P   +I +    G I+ +    P     L G +D   ALAFSPDG+RL+  + D  ARVWD+E    +    IG          AFSP G+ I+       R W
Sbjct:  617 LWDVAKKGMQGNLF--KNEWVGSFAVLPNGR-ILASCASEEGSVWEIKQPDNSIAEFTVPEEPSQWARDAVFAPTGDQIAVGSRKGTIYVWNFEEPEHPIQLTGHTDHTWALAFSPDGKRLVSGADDNTARVWDIELGEEIAILSIGEP--CTPMGFAFSPCGALIVGGLNNEIRFW 788          
BLAST of mRNA_P-wetherbeei_contig54013.1.1 vs. uniprot
Match: A0A495ZBI1_9BACT (Uncharacterized protein n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A495ZBI1_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 1.180e-5
Identity = 41/118 (34.75%), Postives = 59/118 (50.00%), Query Frame = 1
Query:  184 LSSKAVTEIAMSPDLSRIMMADEAGG---IFGFQRGSPAAVDILGGGSDVLLALAFSPDGRRLLETSTDGFARVWDLENATLVTRFRIGSSGAFNEGSAAFSPDGSPILTRPPGAARL 528
            L+ K +T+IA SPD SR+     AGG   I+ +   + A + +L G  D + A+AF PD   L   S D   R+WD + A  +      SS   +  + A SPDG P++      ARL
Sbjct:   23 LNKKQITDIAFSPDGSRLA----AGGDDRIWVYDLSNSAQIAMLAGHLDRVRAVAFGPDNHTLASASEDRTLRLWDTDTANEIATIAGESSSLVS--ALASSPDGVPLIAWNEETARL 134          
BLAST of mRNA_P-wetherbeei_contig54013.1.1 vs. uniprot
Match: A0A0S8FP79_9GAMM (P/Homo B domain-containing protein n=1 Tax=Gammaproteobacteria bacterium SG8_31 TaxID=1703405 RepID=A0A0S8FP79_9GAMM)

HSP 1 Score: 52.8 bits (125), Expect = 8.080e-5
Identity = 49/160 (30.63%), Postives = 71/160 (44.38%), Query Frame = 1
Query:   64 LSLAFSPNGQFVLLGTTGARADVWSVTSGGGPAESYAFSDLSSKAVTEI-AMSPDLSRIMMADEAGGIFGFQRGSP--AAVDILGGGSDVLLALAFSPDGRRLLETSTDGFARVWDLENATLV-TRFRIGSSGAFNEGSAAFSPDGSPILTRPPGAARLW 531
            +S AF      V+ G  G+ A VW++ SG    +    ++    A T + A+SP   ++      G +     G P   A +   G +  + ALA+SPDG R++    DG   +WD   AT V  RF  GS       S A + D   I+T     ARLW
Sbjct:  994 VSRAFDTTNTRVVTGRGGSMARVWNLGSG----DEVPVTEEPGIAFTRVFALSPISDQVSAGGMDGSVHFLDSGGPWSQAPEGASGHAGPITALAYSPDGSRVVSVGADGSVLLWDPRAATTVGQRFHHGSGRVE---SVAVAADNRMIVTGGELGARLW 1146          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig54013.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A450S405_9GAMM8.160e-742.22WD40 repeat n=1 Tax=Candidatus Kentron sp. FW TaxI... [more]
A0A0S8FCX7_9GAMM2.860e-633.13P/Homo B domain-containing protein n=1 Tax=Gammapr... [more]
A0A496B0Q7_9BACT9.190e-626.55Uncharacterized protein n=1 Tax=Candidatus Poribac... [more]
A0A495ZBI1_9BACT1.180e-534.75Uncharacterized protein n=1 Tax=Candidatus Poribac... [more]
A0A0S8FP79_9GAMM8.080e-530.63P/Homo B domain-containing protein n=1 Tax=Gammapr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig54013contigP-wetherbeei_contig54013:3..533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1210884.HG799466_gene12782
PFAMsPD40,Peptidase_C14,Sigma70_r2,Sigma70_r4_2,WD40
Model size531
Max annot lvl2|Bacteria
KEGG koko:K03088
Hectar predicted targeting categoryother localisation
Exons1
Evalue2e-06
EggNOG OGsCOG1595@1|root,COG2319@1|root,COG1595@2|Bacteria,COG2319@2|Bacteria
Descriptionanaphase-promoting complex binding
Cds size531
COG categoryS
BRITEko00000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186807.4749138-CDS-P-wetherbeei_contig54013:2..5331683186807.4749138-CDS-P-wetherbeei_contig54013:2..533Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig54013 3..533 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig54013.1.1prot_P-wetherbeei_contig54013.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig54013 3..533 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig54013.1.1

>prot_P-wetherbeei_contig54013.1.1 ID=prot_P-wetherbeei_contig54013.1.1|Name=mRNA_P-wetherbeei_contig54013.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=177bp
VWNIAESRRVRTITYDDNRSILSLAFSPNGQFVLLGTTGARADVWSVTSG
GGPAESYAFSDLSSKAVTEIAMSPDLSRIMMADEAGGIFGFQRGSPAAVD
ILGGGSDVLLALAFSPDGRRLLETSTDGFARVWDLENATLVTRFRIGSSG
AFNEGSAAFSPDGSPILTRPPGAARLW
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mRNA from alignment at P-wetherbeei_contig54013:3..533-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig54013.1.1 ID=mRNA_P-wetherbeei_contig54013.1.1|Name=mRNA_P-wetherbeei_contig54013.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=531bp|location=Sequence derived from alignment at P-wetherbeei_contig54013:3..533- (Phaeothamnion wetherbeei SAG_119_79)
GTCTGGAATATCGCCGAGTCCCGGCGGGTCAGGACAATCACCTACGACGA CAATCGGTCCATTCTCTCGCTCGCCTTTTCGCCCAACGGTCAGTTTGTCC TGCTCGGCACGACAGGCGCCCGCGCGGACGTCTGGAGCGTCACGAGCGGC GGCGGCCCCGCCGAGTCCTACGCCTTCAGCGACCTGTCCAGCAAAGCCGT CACCGAGATTGCGATGTCGCCGGACCTGAGCCGGATCATGATGGCTGATG AGGCGGGCGGGATATTTGGCTTCCAGCGCGGCTCGCCCGCGGCGGTCGAT ATCCTGGGCGGTGGCTCCGACGTGCTGCTCGCGCTGGCTTTCTCCCCGGA TGGCAGGCGTCTTCTGGAGACCTCGACCGATGGCTTCGCGCGGGTCTGGG ACCTGGAAAACGCCACGCTCGTCACGCGTTTCCGGATCGGCTCGTCAGGC GCCTTCAACGAAGGCTCGGCTGCCTTTTCGCCGGACGGCTCGCCGATACT CACCCGCCCGCCAGGCGCCGCACGGCTCTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig54013:3..533-

>mRNA_P-wetherbeei_contig54013.1.1 ID=mRNA_P-wetherbeei_contig54013.1.1|Name=mRNA_P-wetherbeei_contig54013.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=531bp|location=Sequence derived from alignment at P-wetherbeei_contig54013:3..533- (Phaeothamnion wetherbeei SAG_119_79)
GTCTGGAATATCGCCGAGTCCCGGCGGGTCAGGACAATCACCTACGACGA
CAATCGGTCCATTCTCTCGCTCGCCTTTTCGCCCAACGGTCAGTTTGTCC
TGCTCGGCACGACAGGCGCCCGCGCGGACGTCTGGAGCGTCACGAGCGGC
GGCGGCCCCGCCGAGTCCTACGCCTTCAGCGACCTGTCCAGCAAAGCCGT
CACCGAGATTGCGATGTCGCCGGACCTGAGCCGGATCATGATGGCTGATG
AGGCGGGCGGGATATTTGGCTTCCAGCGCGGCTCGCCCGCGGCGGTCGAT
ATCCTGGGCGGTGGCTCCGACGTGCTGCTCGCGCTGGCTTTCTCCCCGGA
TGGCAGGCGTCTTCTGGAGACCTCGACCGATGGCTTCGCGCGGGTCTGGG
ACCTGGAAAACGCCACGCTCGTCACGCGTTTCCGGATCGGCTCGTCAGGC
GCCTTCAACGAAGGCTCGGCTGCCTTTTCGCCGGACGGCTCGCCGATACT
CACCCGCCCGCCAGGCGCCGCACGGCTCTGG
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