mRNA_P-wetherbeei_contig53545.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53545.1.1
Unique NamemRNA_P-wetherbeei_contig53545.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53545.1.1 vs. uniprot
Match: A0A0S8BCE6_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium SG8_39 TaxID=1703390 RepID=A0A0S8BCE6_9PROT)

HSP 1 Score: 155 bits (393), Expect = 5.710e-47
Identity = 73/115 (63.48%), Postives = 89/115 (77.39%), Query Frame = 1
Query:    1 MHPKARFLLTVAMDIDPDKEALFNEVYDTEHIPELLKVPGVLAVHRFALVPLNMSIGGITKNMVVEGEPKYIATYELENPGVPASAAWATAVELGRWPTQVRPYTSNRRHTLREL 345
            M  KA+++   +MD+DP++EA+FNEVYDTEHIP + KVPGV+A  R  LVPL M IGG  K +V EGEPKY A YELE+P V  S AWA AV+ GRWP++VRPYT NRRHTLR+L
Sbjct:    1 MAGKAKYVFIASMDVDPEREAIFNEVYDTEHIPLISKVPGVVAARRNVLVPLKMFIGGEVKAIVAEGEPKYSAIYELESPDVLTSEAWAKAVDAGRWPSEVRPYTRNRRHTLRKL 115          
BLAST of mRNA_P-wetherbeei_contig53545.1.1 vs. uniprot
Match: A0A850SFV1_9PROT (Uncharacterized protein n=1 Tax=Parvularculaceae bacterium TaxID=2510335 RepID=A0A850SFV1_9PROT)

HSP 1 Score: 155 bits (392), Expect = 8.110e-47
Identity = 72/116 (62.07%), Postives = 87/116 (75.00%), Query Frame = 1
Query:    1 MHPKARFLLTVAMDIDPDKEALFNEVYDTEHIPELLKVPGVLAVHRFALVPLNMSIGGITKNMVVEGEPKYIATYELENPGVPASAAWATAVELGRWPTQVRPYTSNRRHTLRELM 348
            MHP+AR+L   +MD++P KEALFNEVYDTEH+P LLKVPGVL+  R    PL M IGG  + MV EGEP+Y A YELE+  V  S AWA A E GRWPT+VRPYT NRRH L++++
Sbjct:    1 MHPRARYLFIASMDVEPGKEALFNEVYDTEHVPLLLKVPGVLSAVRVTTEPLTMMIGGERRTMVAEGEPRYSAIYELESAEVLLSEAWARAAEQGRWPTEVRPYTRNRRHVLKKIL 116          
BLAST of mRNA_P-wetherbeei_contig53545.1.1 vs. uniprot
Match: A0A3N5NGB4_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5NGB4_9PROT)

HSP 1 Score: 155 bits (391), Expect = 1.230e-46
Identity = 70/113 (61.95%), Postives = 88/113 (77.88%), Query Frame = 1
Query:   10 KARFLLTVAMDIDPDKEALFNEVYDTEHIPELLKVPGVLAVHRFALVPLNMSIGGITKNMVVEGEPKYIATYELENPGVPASAAWATAVELGRWPTQVRPYTSNRRHTLRELM 348
            +A +L   +MD+DPDKEALFNEVYDTEHIP LLKVPGV+++ R+  VPL ++IGG  + +  EGEP+Y A YE+ENP V  S AWA AVE GRWP +VRPYT NRR +LR+L+
Sbjct:    8 RANYLYVASMDVDPDKEALFNEVYDTEHIPMLLKVPGVISIKRYVTVPLTVTIGGQARTIAAEGEPRYSAVYEIENPEVLTSEAWAAAVEAGRWPAEVRPYTHNRRLSLRKLV 120          
BLAST of mRNA_P-wetherbeei_contig53545.1.1 vs. uniprot
Match: A0A317H3W5_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A317H3W5_9PROT)

HSP 1 Score: 154 bits (389), Expect = 2.400e-46
Identity = 69/116 (59.48%), Postives = 88/116 (75.86%), Query Frame = 1
Query:    1 MHPKARFLLTVAMDIDPDKEALFNEVYDTEHIPELLKVPGVLAVHRFALVPLNMSIGGITKNMVVEGEPKYIATYELENPGVPASAAWATAVELGRWPTQVRPYTSNRRHTLRELM 348
            MHPK +++   +MD+DPDKEALFNE+Y+TEH+P +LKVPGVL+  R    PL M IGG  K +V EGEP+Y A YELE+  V  S AWA AV+ GRWPT+VRP+T NRRH LR+++
Sbjct:    1 MHPKTKYIFIASMDVDPDKEALFNEIYETEHVPYVLKVPGVLSAMRTKTEPLRMFIGGEVKTIVAEGEPRYSAAYELESAEVLVSDAWARAVDAGRWPTEVRPFTRNRRHVLRKVL 116          
BLAST of mRNA_P-wetherbeei_contig53545.1.1 vs. uniprot
Match: A0A7W1ALT0_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7W1ALT0_9PROT)

HSP 1 Score: 154 bits (388), Expect = 3.200e-46
Identity = 73/116 (62.93%), Postives = 88/116 (75.86%), Query Frame = 1
Query:    1 MHPKARFLLTVAMDIDPDKEALFNEVYDTEHIPELLKVPGVLAVHRFALVPLNMSIGGITKNMVVEGEPKYIATYELENPGVPASAAWATAVELGRWPTQVRPYTSNRRHTLRELM 348
            M  KAR++LTV MD+D DKEALFNEVYDTEH+P + +VPGVLAV R+  VPL M IGG  K +V+ GEP+Y+A YELE+P V    +WA AV+ GRW TQVRPYT NR H L EL+
Sbjct:    1 MANKARYMLTVCMDVDADKEALFNEVYDTEHVPLISEVPGVLAVRRYRNVPLTMIIGGEAKAIVMAGEPQYLAVYELESPDVLTGESWAKAVDAGRWGTQVRPYTKNRSHVLHELI 116          
BLAST of mRNA_P-wetherbeei_contig53545.1.1 vs. uniprot
Match: A0A2D6T4V0_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D6T4V0_9PROT)

HSP 1 Score: 147 bits (371), Expect = 1.200e-43
Identity = 68/111 (61.26%), Postives = 84/111 (75.68%), Query Frame = 1
Query:   16 RFLLTVAMDIDPDKEALFNEVYDTEHIPELLKVPGVLAVHRFALVPLNMSIGGITKNMVVEGEPKYIATYELENPGVPASAAWATAVELGRWPTQVRPYTSNRRHTLRELM 348
            ++L   +MD+ P+K+ALFNEVYD EH+P LLKVPGV++V R    PL +SIGG  K +V EGEPKY A YE+E+P V  S  WA AVE GRWP +VRPYTSNRRH LR++M
Sbjct:    6 KYLFMASMDVAPEKDALFNEVYDEEHVPNLLKVPGVISVTRLTQEPLVLSIGGEQKEIVAEGEPKYTAIYEIESPDVLVSQEWADAVEKGRWPEEVRPYTSNRRHVLRKVM 116          
BLAST of mRNA_P-wetherbeei_contig53545.1.1 vs. uniprot
Match: A0A1F7NFI0_9BACT (Uncharacterized protein n=1 Tax=Candidatus Rokubacteria bacterium RIFCSPLOWO2_02_FULL_68_19 TaxID=1802104 RepID=A0A1F7NFI0_9BACT)

HSP 1 Score: 147 bits (370), Expect = 1.820e-43
Identity = 70/109 (64.22%), Postives = 84/109 (77.06%), Query Frame = 1
Query:   10 KARFLLTVAMDIDPDKEALFNEVYDTEHIPELLKVPGVLAVHRFALVPLNMSIGGITKNMVVEGEPKYIATYELENPGVPASAAWATAVELGRWPTQVRPYTSNRRHTL 336
            ++R+L +VAMD++PDKEALFNEVYDTEH+P L  VPGV+AV RF   PL M IGG  + +VVE EPKY A YE+E+P V  S AWA AV+ GRWP QVRP+T NRRH L
Sbjct:    4 QSRYLFSVAMDVEPDKEALFNEVYDTEHVPILKTVPGVIAVGRFKTEPLTMIIGGERRTIVVEAEPKYSALYEIESPEVLTSDAWAKAVDRGRWPGQVRPFTRNRRHLL 112          
BLAST of mRNA_P-wetherbeei_contig53545.1.1 vs. uniprot
Match: A0A2E5Q899_9PROT (Uncharacterized protein n=3 Tax=root TaxID=1 RepID=A0A2E5Q899_9PROT)

HSP 1 Score: 146 bits (369), Expect = 2.740e-43
Identity = 69/116 (59.48%), Postives = 85/116 (73.28%), Query Frame = 1
Query:    1 MHPKARFLLTVAMDIDPDKEALFNEVYDTEHIPELLKVPGVLAVHRFALVPLNMSIGGITKNMVVEGEPKYIATYELENPGVPASAAWATAVELGRWPTQVRPYTSNRRHTLRELM 348
            M  +AR+L T +MD+DPDKEALFNEVYDTEH+P L +VPGV+AV R    P  +SIGG  + +  EGE +Y ATYE+E+P V  S  WA AVE GRWP++VRPYT NRRH L  +M
Sbjct:    1 MAQQARYLFTASMDVDPDKEALFNEVYDTEHVPLLSQVPGVIAVQRLIREPCTLSIGGELREIDPEGEARYGATYEIESPAVLKSPEWAAAVEQGRWPSEVRPYTHNRRHVLYRIM 116          
BLAST of mRNA_P-wetherbeei_contig53545.1.1 vs. uniprot
Match: A0A524QIS0_9GAMM (Uncharacterized protein n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A524QIS0_9GAMM)

HSP 1 Score: 145 bits (367), Expect = 5.360e-43
Identity = 67/116 (57.76%), Postives = 85/116 (73.28%), Query Frame = 1
Query:    1 MHPKARFLLTVAMDIDPDKEALFNEVYDTEHIPELLKVPGVLAVHRFALVPLNMSIGGITKNMVVEGEPKYIATYELENPGVPASAAWATAVELGRWPTQVRPYTSNRRHTLRELM 348
            M  + R+L   +MD+DPDKE LFNEVYD EH+P L KVPGVL+V R+   PL M + G  + +  EGEP+Y A YE+E+P V  S AWA A++ GRWPTQVRPYT NRRHTL+++M
Sbjct:    1 MPVQTRYLFIASMDVDPDKEDLFNEVYDKEHVPLLSKVPGVLSVTRYESAPLTMIMAGERRTVQAEGEPRYSAMYEIESPDVLVSDAWAKAIDHGRWPTQVRPYTRNRRHTLKKIM 116          
BLAST of mRNA_P-wetherbeei_contig53545.1.1 vs. uniprot
Match: A0A355AR93_9GAMM (Uncharacterized protein n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A355AR93_9GAMM)

HSP 1 Score: 144 bits (363), Expect = 2.180e-42
Identity = 66/116 (56.90%), Postives = 86/116 (74.14%), Query Frame = 1
Query:    1 MHPKARFLLTVAMDIDPDKEALFNEVYDTEHIPELLKVPGVLAVHRFALVPLNMSIGGITKNMVVEGEPKYIATYELENPGVPASAAWATAVELGRWPTQVRPYTSNRRHTLRELM 348
            M  +AR+L T +MD++PDKEALFNEVYDTEH+P L +VPGV+AV R    P  ++IGG  + +  + EP+Y ATYE+E+P V  +  WA AVE GRWP++VRPYT NRRHTL  +M
Sbjct:    1 MAQQARYLFTASMDVNPDKEALFNEVYDTEHVPLLSRVPGVIAVQRLIREPCTIAIGGELREIDPKDEPRYSATYEIESPDVLTTPEWAEAVEQGRWPSEVRPYTRNRRHTLHRIM 116          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53545.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0S8BCE6_9PROT5.710e-4763.48Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A850SFV1_9PROT8.110e-4762.07Uncharacterized protein n=1 Tax=Parvularculaceae b... [more]
A0A3N5NGB4_9PROT1.230e-4661.95Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A317H3W5_9PROT2.400e-4659.48Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]
A0A7W1ALT0_9PROT3.200e-4662.93Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A2D6T4V0_9PROT1.200e-4361.26Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A1F7NFI0_9BACT1.820e-4364.22Uncharacterized protein n=1 Tax=Candidatus Rokubac... [more]
A0A2E5Q899_9PROT2.740e-4359.48Uncharacterized protein n=3 Tax=root TaxID=1 RepID... [more]
A0A524QIS0_9GAMM5.360e-4357.76Uncharacterized protein n=1 Tax=Xanthomonadales ba... [more]
A0A355AR93_9GAMM2.180e-4256.90Uncharacterized protein n=2 Tax=Proteobacteria Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53545contigP-wetherbeei_contig53545:104..454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1380394.JADL01000002_gene1523
Model size351
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.2e-38
EggNOG OGs2DS7S@1|root,33EWX@2|Bacteria,1NDGE@1224|Proteobacteria,2UH4Z@28211|Alphaproteobacteria
Cds size351
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186800.816217-CDS-P-wetherbeei_contig53545:103..4541683186800.816217-CDS-P-wetherbeei_contig53545:103..454Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53545 104..454 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53545.1.1prot_P-wetherbeei_contig53545.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53545 104..454 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53545.1.1

>prot_P-wetherbeei_contig53545.1.1 ID=prot_P-wetherbeei_contig53545.1.1|Name=mRNA_P-wetherbeei_contig53545.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=117bp
MHPKARFLLTVAMDIDPDKEALFNEVYDTEHIPELLKVPGVLAVHRFALV
PLNMSIGGITKNMVVEGEPKYIATYELENPGVPASAAWATAVELGRWPTQ
VRPYTSNRRHTLRELM*
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mRNA from alignment at P-wetherbeei_contig53545:104..454-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53545.1.1 ID=mRNA_P-wetherbeei_contig53545.1.1|Name=mRNA_P-wetherbeei_contig53545.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=351bp|location=Sequence derived from alignment at P-wetherbeei_contig53545:104..454- (Phaeothamnion wetherbeei SAG_119_79)
ATGCATCCGAAAGCCAGATTCCTGCTTACCGTCGCAATGGACATTGACCC CGACAAGGAGGCACTGTTCAACGAGGTTTATGACACCGAGCATATCCCGG AACTATTGAAAGTGCCCGGCGTGCTCGCAGTGCATCGCTTTGCGCTCGTT CCGCTCAACATGAGCATTGGCGGCATCACCAAGAACATGGTGGTGGAGGG TGAGCCCAAGTACATCGCCACATACGAACTGGAGAACCCGGGTGTGCCCG CCAGCGCCGCCTGGGCGACTGCCGTCGAATTGGGGCGCTGGCCGACCCAA GTGCGGCCCTATACGAGCAACCGCCGTCACACGCTGCGCGAGCTTATGTA G
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53545:104..454-

>mRNA_P-wetherbeei_contig53545.1.1 ID=mRNA_P-wetherbeei_contig53545.1.1|Name=mRNA_P-wetherbeei_contig53545.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=351bp|location=Sequence derived from alignment at P-wetherbeei_contig53545:104..454- (Phaeothamnion wetherbeei SAG_119_79)
ATGCATCCGAAAGCCAGATTCCTGCTTACCGTCGCAATGGACATTGACCC
CGACAAGGAGGCACTGTTCAACGAGGTTTATGACACCGAGCATATCCCGG
AACTATTGAAAGTGCCCGGCGTGCTCGCAGTGCATCGCTTTGCGCTCGTT
CCGCTCAACATGAGCATTGGCGGCATCACCAAGAACATGGTGGTGGAGGG
TGAGCCCAAGTACATCGCCACATACGAACTGGAGAACCCGGGTGTGCCCG
CCAGCGCCGCCTGGGCGACTGCCGTCGAATTGGGGCGCTGGCCGACCCAA
GTGCGGCCCTATACGAGCAACCGCCGTCACACGCTGCGCGAGCTTATGTA
G
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