mRNA_P-wetherbeei_contig532.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig532.3.1
Unique NamemRNA_P-wetherbeei_contig532.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig532.3.1 vs. uniprot
Match: A0A4D9CS67_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CS67_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 4.300e-11
Identity = 44/148 (29.73%), Postives = 72/148 (48.65%), Query Frame = 1 
Query:  730 VAWSRGDRGRFLAALRFHAPHVDSATAFAYFFPNRSESELLEFYYRWRYRQEDFDEWERARGCLDPASIIPDYYGEVCKICGGDGELVCCDTCPLPYHIGCLGLAAPPSEEPWCCPSCVARFQLPEDRAAAAAAVTEVVDRLEALRAK 1173
            +AWS+ +   F+  +  +  +     A     P RS  +++  +Y W+ R  D+  W+  R        IPDY+ +VC +C   G+L+CCDTC L +H+ CLG       E + C  C A++    +R  A   V   V +++ LR K
Sbjct:  166 MAWSQEEEAVFVEGMNEYDKNFVQIKALL---PKRSVQDVVAHFYEWKQRA-DYRAWKADRPLQYLEHAIPDYHADVCDMCERPGDLLCCDTCNLAFHMKCLGFRDEDVPEDFSCSQCQAQYLTTSERERAKRWVESKVRKVQTLREK 309
[Close]
BLAST of mRNA_P-wetherbeei_contig532.3.1 vs. uniprot
Match: W7TMX5_9STRA (Nucleosome-remodeling factor subunit, putative n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMX5_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 7.840e-11
Identity = 44/148 (29.73%), Postives = 72/148 (48.65%), Query Frame = 1 
Query:  730 VAWSRGDRGRFLAALRFHAPHVDSATAFAYFFPNRSESELLEFYYRWRYRQEDFDEWERARGCLDPASIIPDYYGEVCKICGGDGELVCCDTCPLPYHIGCLGLAAPPSEEPWCCPSCVARFQLPEDRAAAAAAVTEVVDRLEALRAK 1173
            +AWS+ +   F+  +  +  +     A     P RS  +++  +Y W+ R  D+  W+  R        IPDY+ +VC +C   G+L+CCDTC L +H+ CLG       E + C  C A++    +R  A   V   V +++ LR K
Sbjct:  363 MAWSQEEEALFVEGMNEYDKNFVQIKALL---PKRSVQDVVAHFYEWKQRA-DYRAWKADRPLQYLEHAIPDYHADVCDMCERPGDLLCCDTCNLAFHMKCLGFRDEDVPEDFSCSQCQAQYLTTSERERAKRWVESKVRKVQTLREK 506
[Close]
BLAST of mRNA_P-wetherbeei_contig532.3.1 vs. uniprot
Match: M1VH65_CYAM1 (PHD-type domain-containing protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VH65_CYAM1)

HSP 1 Score: 68.9 bits (167), Expect = 2.800e-8
Identity = 35/76 (46.05%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:  901 ERARGCLDPAS---IIPDYYG----EVCKICGGDGELVCCDTCPLPYHIGCLGLAAPPSEEPWCCPSCVARFQLPE 1107
            ER R C  P S   I    +G    +VC ICG  G++VCCD CP+ YH+ C+GL + PS E W CP+CV R ++ E
Sbjct:  153 ERYRRCRTPLSNHAIAAIAHGWAPDDVCSICGLGGDIVCCDECPMGYHLQCIGLPSIPSGE-WFCPACVLRIKVEE 227
[Close]
BLAST of mRNA_P-wetherbeei_contig532.3.1 vs. uniprot
Match: A0A7I4F0T5_PHYPA (PHD-type domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4F0T5_PHYPA)

HSP 1 Score: 66.2 bits (160), Expect = 2.020e-7
Identity = 30/60 (50.00%), Postives = 35/60 (58.33%), Query Frame = 1 
Query:  919 LDPASIIPDYYGEVCKICGGDGELVCCDTCPLPYHIGC---LGLAAPPSEEPWCCPSCVA 1089
            +D   I  D   E+C  CG DG+L CCD CP+  H+ C   LGL  P S E WCCP CVA
Sbjct:  489 VDYLDIGDDGQEEICHKCGLDGDLTCCDRCPISMHLKCIEVLGLRVPKSNEDWCCPICVA 548
[Close]
BLAST of mRNA_P-wetherbeei_contig532.3.1 vs. uniprot
Match: A0A7I4A9I9_PHYPA (PHD-type domain-containing protein n=4 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4A9I9_PHYPA)

HSP 1 Score: 66.2 bits (160), Expect = 2.650e-7
Identity = 30/60 (50.00%), Postives = 35/60 (58.33%), Query Frame = 1 
Query:  919 LDPASIIPDYYGEVCKICGGDGELVCCDTCPLPYHIGC---LGLAAPPSEEPWCCPSCVA 1089
            +D   I  D   E+C  CG DG+L CCD CP+  H+ C   LGL  P S E WCCP CVA
Sbjct:  489 VDYLDIGDDGQEEICHKCGLDGDLTCCDRCPISMHLKCIEVLGLRVPKSNEDWCCPICVA 548
[Close]
BLAST of mRNA_P-wetherbeei_contig532.3.1 vs. uniprot
Match: A0A7S1C3G3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C3G3_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.850e-6
Identity = 31/90 (34.44%), Postives = 50/90 (55.56%), Query Frame = 1 
Query:  826 PNRSESELLEFYYRWRYRQEDFDEWERARGCLDPASIIPDYYGEVCKICGGDGELVCCDTCPLPYHIGCLGLAAPP----SEEPWCCPSC 1083
            P+R+  E +E++Y    +     +W+R  G     S+  +++ +VC +CG  G+L+CCD+C L +H+ CL    PP     EE W CP C
Sbjct:   89 PHRTARECVEYFYGVWKKLPRHSQWKRGLG----RSL--EFHDDVCAVCGSGGDLLCCDSCSLAFHVSCL---RPPLFDLPEEDWACPRC 169
[Close]
BLAST of mRNA_P-wetherbeei_contig532.3.1 vs. uniprot
Match: UPI001C4FE7BC (increased DNA methylation 1-like isoform X1 n=4 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4FE7BC)

HSP 1 Score: 62.4 bits (150), Expect = 3.300e-6
Identity = 25/48 (52.08%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:  943 DYYGEVCKICGGDGELVCCDTCPLPYHIGCLGLAAPPSEEPWCCPSCV 1086
            D   ++C ICGGDG+L+CCD CPL YH  C+G+   P + P+ CP CV
Sbjct:  198 DKNDDICNICGGDGQLICCDVCPLTYHEECVGIKTLP-QAPFHCPICV 244
[Close]
BLAST of mRNA_P-wetherbeei_contig532.3.1 vs. uniprot
Match: A0A8J9S1U5_9CHLO (Probable ATP-dependent DNA helicase MPH1 at N-terminal half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S1U5_9CHLO)

HSP 1 Score: 58.9 bits (141), Expect = 5.650e-5
Identity = 25/55 (45.45%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:  922 DPASIIPDYYGEVCKICGGDGELVCCDTCPLPYHIGCLGLA-APPSEEPWCCPSC 1083
            D +  +   + +VC +C GDGEL+CCD CP  +H+ CLGL+ APP +  W C  C
Sbjct: 1737 DASQHVQTQHEDVCGMCRGDGELLCCDGCPAAFHLACLGLSSAPPGD--WFCAVC 1789
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig532.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A4D9CS67_9STRA4.300e-1129.73Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TMX5_9STRA7.840e-1129.73Nucleosome-remodeling factor subunit, putative n=1... [more]
M1VH65_CYAM12.800e-846.05PHD-type domain-containing protein n=1 Tax=Cyanidi... [more]
A0A7I4F0T5_PHYPA2.020e-750.00PHD-type domain-containing protein n=1 Tax=Physcom... [more]
A0A7I4A9I9_PHYPA2.650e-750.00PHD-type domain-containing protein n=4 Tax=Physcom... [more]
A0A7S1C3G3_9STRA1.850e-634.44Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
UPI001C4FE7BC3.300e-652.08increased DNA methylation 1-like isoform X1 n=4 Ta... [more]
A0A8J9S1U5_9CHLO5.650e-545.45Probable ATP-dependent DNA helicase MPH1 at N-term... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig532contigP-wetherbeei_contig532:5026..9760 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog45157.CMR472CT
PFAMsAcetyltransf_1,Jas,PHD
Model size2803
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000785,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003824,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006325,GO:0006333,GO:0006338,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0031491,GO:0034728,GO:0035327,GO:0042623,GO:0042766,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044877,GO:0051276,GO:0070615,GO:0071824,GO:0071840,GO:0097159,GO:1901363
Exons7
Evalue4.59e-09
EggNOG OGs2D07F@1|root,2SD3A@2759|Eukaryota
DescriptionTPL-binding domain in jasmonate signalling
Cds size2799
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig532.3.1prot_P-wetherbeei_contig532.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig532 5026..9758 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186796.4841087-CDS-P-wetherbeei_contig532:5025..51361683186796.4841087-CDS-P-wetherbeei_contig532:5025..5136Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig532 5026..5136 +
1683186796.497303-CDS-P-wetherbeei_contig532:5417..59901683186796.497303-CDS-P-wetherbeei_contig532:5417..5990Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig532 5418..5990 +
1683186796.506395-CDS-P-wetherbeei_contig532:6404..65531683186796.506395-CDS-P-wetherbeei_contig532:6404..6553Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig532 6405..6553 +
1683186796.5138953-CDS-P-wetherbeei_contig532:6873..70061683186796.5138953-CDS-P-wetherbeei_contig532:6873..7006Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig532 6874..7006 +
1683186796.5222208-CDS-P-wetherbeei_contig532:7336..78151683186796.5222208-CDS-P-wetherbeei_contig532:7336..7815Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig532 7337..7815 +
1683186796.5384011-CDS-P-wetherbeei_contig532:8189..85581683186796.5384011-CDS-P-wetherbeei_contig532:8189..8558Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig532 8190..8558 +
1683186796.5500603-CDS-P-wetherbeei_contig532:8773..97581683186796.5500603-CDS-P-wetherbeei_contig532:8773..9758Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig532 8774..9758 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig532.3.1

>prot_P-wetherbeei_contig532.3.1 ID=prot_P-wetherbeei_contig532.3.1|Name=mRNA_P-wetherbeei_contig532.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=933bp
NWLEAGAACKKMEGPCGRAYYTQLPVQQGVAAGNAHKEDMRVTTFAAHAL
PDMKPTPQGAINDSAMPFGGAGDAEVAMHSFPPGAAPSSEDDYARLRAAM
PNGAAATDAAAGAASPVNPATSGSGVDIGNARPSKNGSAINGAGGSSSGF
GVSGGGAYGYGCGYTYGQKPAAAGGSMAAGTIEQPMQQASSSGYSADGGG
NGLPLLSDVELCGIIHSACYDLVVADAQVQKCGLRPVMRIIPVVAWSRGD
RGRFLAALRFHAPHVDSATAFAYFFPNRSESELLEFYYRWRYRQEDFDEW
ERARGCLDPASIIPDYYGEVCKICGGDGELVCCDTCPLPYHIGCLGLAAP
PSEEPWCCPSCVARFQLPEDRAAAAAAVTEVVDRLEALRAKVAAEQEERA
TARVKRTVAEAEAAADAAAAAVEAKLHARRGRPSGRGKSGGYGGDTGGGR
ARTVRWAAAETQELIDAVRRHTGEARSGRVEWVDILTDPALSQLMKKRGN
RAVVEKWRNLRRQRRLPEDVFDAVCGLEDTGGGRSGGGTGGGSSGGACDR
GGVDGDEWLGGGSAGGGGQRGYKGRWDDLAGAGDYAGWHAWKTADDDALV
AAIRKFGDKNWRLLMEGAPSQRVADLFARWGPKAVKARWRHLRRESGRVR
WEVNSDDGEGEGEGGGFAARAAAVSAGPSSDEADGEFDPSEAGQDDSDYE
ADSGGGATTRTPSLEKRKAMHPPFQEQQPSWAAAPMAAPAAQGAAGAGIT
AEAWAAGAAAPSASWMGAAAPAGMPALSAAWAGAAMPARIPASPAAWMGA
AAPAALPALSAMPATDMRAEWGADGGGFGGAEALQSVSATGAAERAAASA
TWLANQESALVRAVRQFGVGSWAEMLVDPSFEGAFAGRTALDLQDRWRIM
KHRLSRRLRQEGPMLQRRAAPAMMAPKQELKAE
back to top

mRNA from alignment at P-wetherbeei_contig532:5026..9760+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig532.3.1 ID=mRNA_P-wetherbeei_contig532.3.1|Name=mRNA_P-wetherbeei_contig532.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=4735bp|location=Sequence derived from alignment at P-wetherbeei_contig532:5026..9760+ (Phaeothamnion wetherbeei SAG_119_79)
AATTGGCTGGAGGCGGGAGCTGCGTGCAAGAAGATGGAGGGGCCATGCGG
AAGAGCTTACTATACGCAGCTGCCGGTGCAGCAAGGTGTCGCGGCCGGAA
ACGCCCACAAGGTGCCATTTTTCTCGCCCTGCCATTCTTTGGATCTTTTT
ACCTTTTCGACCTTGCGCGATATCGTATTGATTCGTCACAGGCCACCGTA
ATCCTGCTACAATGTAAGAGTAGCTGTAATACTAGTTAAAATTCACAGCA
TTTTACCCGCTTCCGCTCGTCTACTTTTCAAATTCTCTTTTGGAGCCGTC
CTTGTTACTGGATTCGAAAACTCGAATGGCGGCCAGACAGTGAAAGGCTG
AAACAGTAGCACTTGCGATTCGCGAAACCGTGCCTTTTGCAGGAGGACAT
GCGGGTGACAACCTTCGCAGCCCATGCGCTACCCGATATGAAACCGACGC
CGCAAGGAGCCATCAACGACTCGGCGATGCCTTTCGGTGGCGCCGGCGAT
GCCGAAGTGGCTATGCACAGCTTTCCGCCGGGCGCGGCGCCTTCGTCGGA
AGACGACTACGCACGTCTAAGGGCTGCGATGCCAAATGGCGCCGCCGCGA
CGGACGCCGCCGCCGGCGCGGCCTCCCCGGTTAACCCAGCAACCAGTGGC
AGTGGTGTGGACATTGGCAATGCTCGACCCAGCAAGAACGGCAGCGCCAT
CAACGGCGCCGGCGGCAGCAGCAGCGGCTTTGGTGTCAGCGGTGGCGGCG
CCTATGGCTACGGTTGCGGCTACACCTACGGCCAGAAACCAGCCGCGGCG
GGAGGAAGCATGGCCGCGGGGACCATTGAGCAGCCGATGCAGCAAGCGAG
CAGCAGCGGCTACTCGGCGGATGGTGGCGGCAATGGTCTGCCACTACTTT
CAGATGTGGAATTATGCGGCATCATCCACTCCGCCTGCTACGATCTGGTG
GTGGCTGACGCACAGGTATGTGTGTTCGCTTGCCTTCCCACTTTTGACAT
CACTGCAGGTCAAAGCTCTCCTTTGGTTTAGAACCAGTTGAATGCACGAT
GTTCTTTTTCCGTATCCTTTTCTGTATTCACTTTCGAGCTAGGAGCTCCT
GCTGTTGCCTACGACTCCTCCGGTGCTATCCTTCCTACTTCACGTTTTCC
CACCCGCCAGCTTAACGTGAATGTAAGAAAGCCGCATGTGCGCGGCTGGA
AGTTCCCTCGGCCTTTCAGGCAGCTGGGGCACGAAGCAATTTCGGACAAG
CCGATACCTGCCGTTTGCTTGCCGCAGCTGGAACCGGCAGCGGGAACTAC
AAACCGTGTCTTGGCGCACCTTCCCCTTACACACTGATGTCTTCCGAACT
GCTGCGACGTCATTTTTGAGGTCTGGCAGGTGCAGAAGTGTGGGCTGCGG
CCCGTGATGCGGATCATCCCTGTGGTGGCGTGGAGCAGAGGTGACCGCGG
GCGCTTCCTGGCAGCGCTGCGGTTCCATGCACCGCACGTCGACTCGGCCA
CAGCGTTCGCCTACTTCTTTCCCAACAGGTAAAAACTTGAGAGGAACTGT
TGTTGAGGCGTCGGATCTTCCGTGGATGCATACATTTTCCTGTGGCCTAC
AACTGGAAGGATGAGTGTGCTGGCGCTTTTTCCAAGCGGGTTTTTCATGG
TGCCTGGCTTGCCGATGTCTGCAGTTTGGAATTCCGTTTGCGTCTAATTT
AGAGAGAAATTTACTAGAGGTGTTACATGGGCGGGCGAGCTTTGGCCGTG
GAAGAAGTAGACATCGCCACCACTGATTGCATTATCATTATTTTGGGAAA
GATTTTGAACCCTTTTTGGCGCTGTTGCCGGGGTGAGGAAAGAAACAGGA
GCGAGAGCGAGCTGCTGGAGTTTTACTACCGATGGAGGTACCGCCAGGAA
GACTTCGACGAGTGGGAGCGTGCGCGGGGCTGCCTCGACCCTGCCTCCAT
CATCCCCGACTACTACGGCGAGGTCTGCAAGGTAGGAGGTGGTCGAAGCC
ATGCCAGATAGAATGTCGCTGCAAATACGACGGTGGCAGCCAGCCAGGCG
CCGATGCCAGCCGCCCGCCACCGGCCGCTGCCGTGCGGCAGCCCGGCCGC
GCTTCGCCAATGTTTCCATCACACTAGCGAGCTCTGGAGAATGGCGTTTG
TGTGTTGTACCTTGTGGAGCACAGATGAACATGGCGGGCCTCCCGACCCC
TACGTTTTGGCCGTCCACCTTCGACGTCGGTTTAAATCGTGCGCCTCTTT
CCTGACCTCCGTTTCGTCCGTTATCAACATCACTAAGCGAAACGGACCGA
ACGGAACGCAGATTTGCGGAGGCGACGGCGAGCTGGTGTGCTGCGATACT
TGCCCGCTGCCCTACCATATCGGCTGTCTCGGTCTGGCAGCGCCGCCGTC
AGAGGAGCCGTGGTGCTGCCCGTCCTGCGTCGCGCGCTTCCAGCTGCCGG
AGGACCGCGCCGCCGCCGCCGCCGCTGTGACGGAGGTTGTCGACCGGCTT
GAGGCTCTGCGGGCGAAGGTGGCGGCGGAGCAGGAGGAGCGAGCGACCGC
CCGGGTCAAGCGGACGGTGGCGGAGGCGGAGGCCGCCGCCGACGCCGCCG
CTGCCGCCGTCGAGGCCAAGCTGCACGCCCGGAGGGGACGGCCGTCGGGG
AGAGGCAAAAGTGGCGGCTACGGCGGAGATACCGGCGGCGGCCGCGCGCG
GACGGTGCGGTGGGCAGCCGCGGAGACTCAGGAGCTCATCGACGCCGTGA
GGCGGCACACCGGCGAGGCGAGAAGCGGCCGGGTGGAGTGGTGAGTGGAG
AGTGCTTTCTGTTGGACATTTAGAAATAGGAAGGGATATTAAGTTGTGGT
TGGTTGATATTTTTGCCCCCTTGTCTTTTCTAGTTGCTGTGCTGTTTCTG
CCATCTGCTTCGTTCTGCGTTGTGTGCTGGTGAGTTACTTTCTTGCATGC
TTGCTCTATTTGGATGTCAAATTCTGTGCGATTTAAGTTAATCGAAGCGT
CTAGTGATCGGAATCTCAATTATTCCTCTCTTGCCTTTCGATTCAGCGGG
ACCGAACTTCTTTTCTGGTTTATCCATCATAGCGTGCCCGCACCTGGCCC
TTTGACGAGAACGCCGGGGGGAACGAAACGCCAAAACCGTAATATCCCCG
TGGATCTGCATCAGGGTTGACATCCTGACGGACCCGGCGCTTTCGCAGCT
GATGAAGAAGCGCGGTAACCGCGCCGTCGTCGAGAAATGGCGCAACCTCC
GCCGCCAGCGCCGCCTGCCGGAGGACGTTTTCGATGCCGTTTGCGGCCTC
GAAGACACCGGCGGCGGCCGCAGCGGCGGCGGCACCGGCGGCGGCAGCAG
CGGCGGCGCCTGCGACCGTGGTGGTGTCGACGGGGATGAATGGCTGGGCG
GCGGCAGTGCTGGAGGCGGGGGTCAGCGGGGGTACAAAGGGCGGTGGGAC
GACCTCGCTGGCGCCGGCGACTACGCGGGGTGGCACGCGTGGAAGACGGC
AGACGACGACGCGCTTGTCGCGGCGATTCGAAAGTGCGTTCATTCTGTTC
GGCTGATAAAACCCATATATCATTGGACTTGACAGGCCCGACCTCCTTTT
CCCAGCTCCAATCCTTTCAAGCTCTAACAGCTGCTGCCCCCCATTAAAAC
TGCGCGATACTTTATATACGCTCCTCCTTTCTTCATTGCCACCCCTCCTG
TCGCTGCCGCTTGCCTCTAACCACGATTCCATGGGACCCCGCACACAGGT
TTGGCGACAAGAACTGGCGGCTGCTGATGGAAGGGGCGCCCTCCCAGCGC
GTAGCCGATCTTTTCGCGCGATGGGGCCCGAAGGCCGTCAAGGCGCGGTG
GCGGCACCTCCGGCGGGAGTCTGGTCGGGTCCGCTGGGAGGTCAACAGCG
ACGACGGAGAAGGAGAAGGGGAGGGCGGCGGCTTCGCGGCGAGGGCCGCC
GCGGTGTCCGCCGGACCCAGCAGCGACGAGGCGGACGGGGAGTTTGACCC
TTCCGAAGCTGGGCAGGACGATTCCGATTATGAAGCCGACAGCGGCGGTG
GTGCAACGACGCGAACGCCGTCCTTGGAGAAGCGCAAAGCCATGCACCCG
CCCTTCCAGGAACAGCAGCCGTCGTGGGCGGCGGCACCGATGGCGGCGCC
GGCGGCCCAGGGAGCGGCGGGGGCCGGGATAACTGCTGAAGCGTGGGCGG
CGGGAGCGGCAGCGCCATCGGCTTCATGGATGGGAGCGGCAGCGCCAGCC
GGAATGCCAGCTTTGTCAGCTGCGTGGGCGGGAGCGGCGATGCCAGCGAG
AATCCCAGCGTCGCCGGCTGCCTGGATGGGAGCGGCGGCCCCAGCGGCAT
TGCCAGCATTGTCGGCGATGCCGGCAACGGACATGCGAGCCGAGTGGGGC
GCCGATGGCGGAGGTTTTGGCGGCGCCGAGGCGCTGCAGTCGGTTTCCGC
CACCGGGGCTGCCGAGAGGGCCGCCGCCAGCGCGACGTGGCTCGCAAACC
AAGAAAGCGCGCTGGTGAGGGCGGTGCGGCAGTTCGGCGTCGGGAGCTGG
GCGGAAATGCTCGTAGATCCGTCCTTCGAAGGGGCGTTTGCAGGGCGGAC
GGCGCTAGACCTTCAGGACCGCTGGCGGATTATGAAGCACCGCCTGTCCC
GCCGGCTCCGGCAGGAAGGGCCGATGCTGCAACGGCGGGCAGCTCCAGCG
ATGATGGCGCCAAAACAGGAGCTAAAGGCGGAACC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig532:5026..9760+

>mRNA_P-wetherbeei_contig532.3.1 ID=mRNA_P-wetherbeei_contig532.3.1|Name=mRNA_P-wetherbeei_contig532.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2799bp|location=Sequence derived from alignment at P-wetherbeei_contig532:5026..9760+ (Phaeothamnion wetherbeei SAG_119_79)
AATTGGCTGGAGGCGGGAGCTGCGTGCAAGAAGATGGAGGGGCCATGCGG
AAGAGCTTACTATACGCAGCTGCCGGTGCAGCAAGGTGTCGCGGCCGGAA
ACGCCCACAAGGAGGACATGCGGGTGACAACCTTCGCAGCCCATGCGCTA
CCCGATATGAAACCGACGCCGCAAGGAGCCATCAACGACTCGGCGATGCC
TTTCGGTGGCGCCGGCGATGCCGAAGTGGCTATGCACAGCTTTCCGCCGG
GCGCGGCGCCTTCGTCGGAAGACGACTACGCACGTCTAAGGGCTGCGATG
CCAAATGGCGCCGCCGCGACGGACGCCGCCGCCGGCGCGGCCTCCCCGGT
TAACCCAGCAACCAGTGGCAGTGGTGTGGACATTGGCAATGCTCGACCCA
GCAAGAACGGCAGCGCCATCAACGGCGCCGGCGGCAGCAGCAGCGGCTTT
GGTGTCAGCGGTGGCGGCGCCTATGGCTACGGTTGCGGCTACACCTACGG
CCAGAAACCAGCCGCGGCGGGAGGAAGCATGGCCGCGGGGACCATTGAGC
AGCCGATGCAGCAAGCGAGCAGCAGCGGCTACTCGGCGGATGGTGGCGGC
AATGGTCTGCCACTACTTTCAGATGTGGAATTATGCGGCATCATCCACTC
CGCCTGCTACGATCTGGTGGTGGCTGACGCACAGGTGCAGAAGTGTGGGC
TGCGGCCCGTGATGCGGATCATCCCTGTGGTGGCGTGGAGCAGAGGTGAC
CGCGGGCGCTTCCTGGCAGCGCTGCGGTTCCATGCACCGCACGTCGACTC
GGCCACAGCGTTCGCCTACTTCTTTCCCAACAGGAGCGAGAGCGAGCTGC
TGGAGTTTTACTACCGATGGAGGTACCGCCAGGAAGACTTCGACGAGTGG
GAGCGTGCGCGGGGCTGCCTCGACCCTGCCTCCATCATCCCCGACTACTA
CGGCGAGGTCTGCAAGATTTGCGGAGGCGACGGCGAGCTGGTGTGCTGCG
ATACTTGCCCGCTGCCCTACCATATCGGCTGTCTCGGTCTGGCAGCGCCG
CCGTCAGAGGAGCCGTGGTGCTGCCCGTCCTGCGTCGCGCGCTTCCAGCT
GCCGGAGGACCGCGCCGCCGCCGCCGCCGCTGTGACGGAGGTTGTCGACC
GGCTTGAGGCTCTGCGGGCGAAGGTGGCGGCGGAGCAGGAGGAGCGAGCG
ACCGCCCGGGTCAAGCGGACGGTGGCGGAGGCGGAGGCCGCCGCCGACGC
CGCCGCTGCCGCCGTCGAGGCCAAGCTGCACGCCCGGAGGGGACGGCCGT
CGGGGAGAGGCAAAAGTGGCGGCTACGGCGGAGATACCGGCGGCGGCCGC
GCGCGGACGGTGCGGTGGGCAGCCGCGGAGACTCAGGAGCTCATCGACGC
CGTGAGGCGGCACACCGGCGAGGCGAGAAGCGGCCGGGTGGAGTGGGTTG
ACATCCTGACGGACCCGGCGCTTTCGCAGCTGATGAAGAAGCGCGGTAAC
CGCGCCGTCGTCGAGAAATGGCGCAACCTCCGCCGCCAGCGCCGCCTGCC
GGAGGACGTTTTCGATGCCGTTTGCGGCCTCGAAGACACCGGCGGCGGCC
GCAGCGGCGGCGGCACCGGCGGCGGCAGCAGCGGCGGCGCCTGCGACCGT
GGTGGTGTCGACGGGGATGAATGGCTGGGCGGCGGCAGTGCTGGAGGCGG
GGGTCAGCGGGGGTACAAAGGGCGGTGGGACGACCTCGCTGGCGCCGGCG
ACTACGCGGGGTGGCACGCGTGGAAGACGGCAGACGACGACGCGCTTGTC
GCGGCGATTCGAAAGTTTGGCGACAAGAACTGGCGGCTGCTGATGGAAGG
GGCGCCCTCCCAGCGCGTAGCCGATCTTTTCGCGCGATGGGGCCCGAAGG
CCGTCAAGGCGCGGTGGCGGCACCTCCGGCGGGAGTCTGGTCGGGTCCGC
TGGGAGGTCAACAGCGACGACGGAGAAGGAGAAGGGGAGGGCGGCGGCTT
CGCGGCGAGGGCCGCCGCGGTGTCCGCCGGACCCAGCAGCGACGAGGCGG
ACGGGGAGTTTGACCCTTCCGAAGCTGGGCAGGACGATTCCGATTATGAA
GCCGACAGCGGCGGTGGTGCAACGACGCGAACGCCGTCCTTGGAGAAGCG
CAAAGCCATGCACCCGCCCTTCCAGGAACAGCAGCCGTCGTGGGCGGCGG
CACCGATGGCGGCGCCGGCGGCCCAGGGAGCGGCGGGGGCCGGGATAACT
GCTGAAGCGTGGGCGGCGGGAGCGGCAGCGCCATCGGCTTCATGGATGGG
AGCGGCAGCGCCAGCCGGAATGCCAGCTTTGTCAGCTGCGTGGGCGGGAG
CGGCGATGCCAGCGAGAATCCCAGCGTCGCCGGCTGCCTGGATGGGAGCG
GCGGCCCCAGCGGCATTGCCAGCATTGTCGGCGATGCCGGCAACGGACAT
GCGAGCCGAGTGGGGCGCCGATGGCGGAGGTTTTGGCGGCGCCGAGGCGC
TGCAGTCGGTTTCCGCCACCGGGGCTGCCGAGAGGGCCGCCGCCAGCGCG
ACGTGGCTCGCAAACCAAGAAAGCGCGCTGGTGAGGGCGGTGCGGCAGTT
CGGCGTCGGGAGCTGGGCGGAAATGCTCGTAGATCCGTCCTTCGAAGGGG
CGTTTGCAGGGCGGACGGCGCTAGACCTTCAGGACCGCTGGCGGATTATG
AAGCACCGCCTGTCCCGCCGGCTCCGGCAGGAAGGGCCGATGCTGCAACG
GCGGGCAGCTCCAGCGATGATGGCGCCAAAACAGGAGCTAAAGGCGGAA
back to top