mRNA_P-wetherbeei_contig53041.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53041.1.1
Unique NamemRNA_P-wetherbeei_contig53041.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53041.1.1 vs. uniprot
Match: A0A429X1M6_9BACI (DUF11 domain-containing protein n=2 Tax=Siminovitchia terrae TaxID=1914933 RepID=A0A429X1M6_9BACI)

HSP 1 Score: 59.3 bits (142), Expect = 4.540e-7
Identity = 44/130 (33.85%), Postives = 64/130 (49.23%), Query Frame = 1
Query:    7 DLPAGTAGQLTFTGT-FGDRNTPDGHVIDVLAGFTADGAAASAGATVNLTSTTGVF--ARKTLSGPPSPVPGTDVTYFVGYGQT-GNWDSNAGT------VVDQLPHGAAYVSSTNGGVYDPVAETVTWT 366
            ++ AG+ GQL      F +  TP+G    +   F +D A+  A   +  T     +   +K +   P P+P T+V Y + +  T G+ + N         +VDQLP GA YVSS+  GVYD    TVTWT
Sbjct:  457 NIDAGSTGQLRINNLKFPNYTTPNGTEAAIKTEFISDEASGKAEDVIVSTKAKANWELTKKKIKPHPEPMPNTNVVYEIVFRNTKGDGNENGSLQLEDAMIVDQLPEGAEYVSSSPEGVYDTKKHTVTWT 586          
BLAST of mRNA_P-wetherbeei_contig53041.1.1 vs. uniprot
Match: A0A1V5RR06_9CHLR (Serine-aspartate repeat-containing protein D n=1 Tax=Chloroflexi bacterium ADurb.Bin325 TaxID=1852859 RepID=A0A1V5RR06_9CHLR)

HSP 1 Score: 54.3 bits (129), Expect = 2.360e-5
Identity = 39/109 (35.78%), Postives = 52/109 (47.71%), Query Frame = 1
Query:  196 PSPVP-GTDVTYFVGYGQTGNWDSNAGTVVDQLPHGAAYVSSTNGGVYDPVAETVTWTFDRNVYPGNGSLSSGCGITGAGTPWCNSVTVRYSPSSFGPGDIVTNAMTVT 519
            P PV  G+++TY V +   GN  +   T+VD LP   A+VS+TNGGVYD  A TVTW          GS                 VTV  +   +  G  +TNA+ +T
Sbjct:  482 PEPVDAGSELTYSVDWTVGGNAYAEDVTIVDTLPQEVAFVSATNGGVYDAGAHTVTWLLGTVTPAATGSYE---------------VTVEVASPLYN-GTTLTNAVVIT 574          
BLAST of mRNA_P-wetherbeei_contig53041.1.1 vs. uniprot
Match: UPI000A1909DB (LPXTG cell wall anchor domain-containing protein n=1 Tax=Leifsonia sp. NCR5 TaxID=1978342 RepID=UPI000A1909DB)

HSP 1 Score: 53.9 bits (128), Expect = 3.200e-5
Identity = 43/122 (35.25%), Postives = 56/122 (45.90%), Query Frame = 1
Query:   19 GTAGQLTFTGTFGDRNTPDGHVIDVLAGFTADGAAASAGATVNLTSTTGVFARKTLSGPPSPVPGTDVTYFVGYG------QTGNWDSNAGTVVDQLPHGAAYVSSTNGGVYDPVAETVTWT 366
            GT    T    + D   PDG V   +   TA      A + + +        R+TL  P  PV     TY + YG        G  D     +VD LP G  +VS+++GGVYDP+AETVTWT
Sbjct:  147 GTTFPATIRLGYADAAAPDGQVTTQVT--TARPVVVEAKSALTVVKQMKTPIRETLVRPDEPV-----TYAI-YGCNPNAASLGALDYTDLVLVDSLPKGTTFVSASDGGVYDPIAETVTWT 260          
BLAST of mRNA_P-wetherbeei_contig53041.1.1 vs. uniprot
Match: A0A2N1XD67_9GAMM (Uncharacterized protein (Fragment) n=1 Tax=Gammaproteobacteria bacterium HGW-Gammaproteobacteria-7 TaxID=2013803 RepID=A0A2N1XD67_9GAMM)

HSP 1 Score: 53.5 bits (127), Expect = 3.990e-5
Identity = 48/146 (32.88%), Postives = 69/146 (47.26%), Query Frame = 1
Query:    4 GDLPAGTAGQLTFTGTFGDRNTPDGHVIDVLAGFTADGAAASAGATVNLTS-------------TTGVFARKTLS----GPPSPVP-GTDVTYFVGYGQTGNWDSNAGTVVDQLPHGAAYVSSTNGGVYDPVAETVTWTFDRNVYP 387
            G L  G+AGQL               V+D+   F A     + G T++ T+             TT VFA+  L+      P PV  G  + Y + +   GN  +   T+VD LP+   +V++++GGVY+PVA TVTWT   NV P
Sbjct:  301 GTLAIGSAGQLQV-------------VVDLDPVFPAGTTTLTNGVTISTTTPGELDTSDNADTDTTDVFAQVELAIAKAAAPEPVDAGAPLNYTIDWTVGGNAYAPGVTIVDTLPNLVTFVAASDGGVYNPVAHTVTWTLG-NVTP 432          
BLAST of mRNA_P-wetherbeei_contig53041.1.1 vs. uniprot
Match: A0A2N2PZ64_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium HGW-Chloroflexi-1 TaxID=2013723 RepID=A0A2N2PZ64_9CHLR)

HSP 1 Score: 53.5 bits (127), Expect = 4.370e-5
Identity = 48/146 (32.88%), Postives = 69/146 (47.26%), Query Frame = 1
Query:    4 GDLPAGTAGQLTFTGTFGDRNTPDGHVIDVLAGFTADGAAASAGATVNLTS-------------TTGVFARKTLS----GPPSPVP-GTDVTYFVGYGQTGNWDSNAGTVVDQLPHGAAYVSSTNGGVYDPVAETVTWTFDRNVYP 387
            G L  G+AGQL               V+D+   F A     + G T++ T+             TT VFA+  L+      P PV  G  + Y + +   GN  +   T+VD LP+   +V++++GGVY+PVA TVTWT   NV P
Sbjct:  392 GTLAIGSAGQLQV-------------VVDLDPVFPAGTTTLTNGVTISTTTPGELDTSDNADTDTTDVFAQVELAIAKAAAPEPVDAGAPLNYTIDWTVGGNAYAPGVTIVDTLPNLVTFVAASDGGVYNPVAHTVTWTLG-NVTP 523          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53041.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A429X1M6_9BACI4.540e-733.85DUF11 domain-containing protein n=2 Tax=Siminovitc... [more]
A0A1V5RR06_9CHLR2.360e-535.78Serine-aspartate repeat-containing protein D n=1 T... [more]
UPI000A1909DB3.200e-535.25LPXTG cell wall anchor domain-containing protein n... [more]
A0A2N1XD67_9GAMM3.990e-532.88Uncharacterized protein (Fragment) n=1 Tax=Gammapr... [more]
A0A2N2PZ64_9CHLR4.370e-532.88Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53041contigP-wetherbeei_contig53041:1..528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog411466.ACTODO_00564
PFAMsDUF11,SdrD_B
Model size528
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.06e-15
EggNOG OGsCOG2373@1|root,COG4932@1|root,COG2373@2|Bacteria,COG4932@2|Bacteria,2I66Z@201174|Actinobacteria,4D38B@85005|Actinomycetales
DescriptionSdrD B-like domain
Cds size528
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186794.541643-CDS-P-wetherbeei_contig53041:0..5281683186794.541643-CDS-P-wetherbeei_contig53041:0..528Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53041 1..528 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53041.1.1prot_P-wetherbeei_contig53041.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53041 1..528 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53041.1.1

>prot_P-wetherbeei_contig53041.1.1 ID=prot_P-wetherbeei_contig53041.1.1|Name=mRNA_P-wetherbeei_contig53041.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=176bp
AGDLPAGTAGQLTFTGTFGDRNTPDGHVIDVLAGFTADGAAASAGATVNL
TSTTGVFARKTLSGPPSPVPGTDVTYFVGYGQTGNWDSNAGTVVDQLPHG
AAYVSSTNGGVYDPVAETVTWTFDRNVYPGNGSLSSGCGITGAGTPWCNS
VTVRYSPSSFGPGDIVTNAMTVTAWP
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mRNA from alignment at P-wetherbeei_contig53041:1..528-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53041.1.1 ID=mRNA_P-wetherbeei_contig53041.1.1|Name=mRNA_P-wetherbeei_contig53041.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=528bp|location=Sequence derived from alignment at P-wetherbeei_contig53041:1..528- (Phaeothamnion wetherbeei SAG_119_79)
GCCGGCGATCTGCCGGCCGGCACCGCGGGGCAGCTCACCTTCACCGGCAC CTTCGGTGACCGCAACACGCCCGACGGCCACGTCATCGACGTCCTCGCCG GGTTCACCGCCGACGGTGCCGCAGCGTCGGCTGGCGCCACGGTCAACCTC ACCAGCACGACCGGTGTGTTCGCCCGAAAGACGCTGAGCGGGCCGCCCTC ACCGGTCCCCGGCACCGACGTCACCTACTTCGTCGGCTACGGACAGACGG GCAACTGGGACTCGAACGCCGGCACCGTCGTCGACCAGTTGCCGCACGGC GCGGCCTACGTGTCGTCCACCAACGGCGGCGTCTACGACCCGGTCGCCGA GACCGTCACGTGGACGTTCGACCGGAACGTGTACCCGGGCAACGGCTCGC TCTCCTCCGGCTGCGGCATCACAGGAGCGGGCACGCCCTGGTGCAACAGC GTCACGGTGCGCTACTCGCCGAGCTCGTTCGGGCCCGGCGACATCGTCAC CAACGCGATGACCGTCACCGCGTGGCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53041:1..528-

>mRNA_P-wetherbeei_contig53041.1.1 ID=mRNA_P-wetherbeei_contig53041.1.1|Name=mRNA_P-wetherbeei_contig53041.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=528bp|location=Sequence derived from alignment at P-wetherbeei_contig53041:1..528- (Phaeothamnion wetherbeei SAG_119_79)
GCCGGCGATCTGCCGGCCGGCACCGCGGGGCAGCTCACCTTCACCGGCAC
CTTCGGTGACCGCAACACGCCCGACGGCCACGTCATCGACGTCCTCGCCG
GGTTCACCGCCGACGGTGCCGCAGCGTCGGCTGGCGCCACGGTCAACCTC
ACCAGCACGACCGGTGTGTTCGCCCGAAAGACGCTGAGCGGGCCGCCCTC
ACCGGTCCCCGGCACCGACGTCACCTACTTCGTCGGCTACGGACAGACGG
GCAACTGGGACTCGAACGCCGGCACCGTCGTCGACCAGTTGCCGCACGGC
GCGGCCTACGTGTCGTCCACCAACGGCGGCGTCTACGACCCGGTCGCCGA
GACCGTCACGTGGACGTTCGACCGGAACGTGTACCCGGGCAACGGCTCGC
TCTCCTCCGGCTGCGGCATCACAGGAGCGGGCACGCCCTGGTGCAACAGC
GTCACGGTGCGCTACTCGCCGAGCTCGTTCGGGCCCGGCGACATCGTCAC
CAACGCGATGACCGTCACCGCGTGGCCC
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