mRNA_P-wetherbeei_contig53.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig53.4.1
Unique NamemRNA_P-wetherbeei_contig53.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig53.4.1 vs. uniprot
Match: A0A835ZI64_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI64_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.950e-18
Identity = 39/68 (57.35%), Postives = 47/68 (69.12%), Query Frame = 1
Query:   13 GLPDVPRSRDDIHIVFSTDCSPYQDWQAYLLFNSARVAAHNGRITRLASGCSLEDEKRLATLHQKLPP 216
            G+  VPR   D+H+VFST+CS YQDWQ+ LLF SA  A H G ITRLA GCS E +  +  LHQ +PP
Sbjct:   33 GITAVPRDEHDVHVVFSTECSSYQDWQSLLLFFSATRAGHKGPITRLAGGCSPEKQTEILKLHQHMPP 100          
BLAST of mRNA_P-wetherbeei_contig53.4.1 vs. uniprot
Match: A0A7S2XWN9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWN9_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 8.910e-18
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 1
Query:   28 PRSRDDIHIVFSTDCSPYQDWQAYLLFNSARVAAHNGRITRLASGCSLEDEKRLATLHQK 207
            P+ RDDIH+VFSTDCS YQ+WQ+ +L +SA +    GR+TRLASGCS E+E  L  +H K
Sbjct:   62 PKDRDDIHLVFSTDCSGYQNWQSIILMHSAMLIDQPGRVTRLASGCSEEEEAELRAMHAK 121          
BLAST of mRNA_P-wetherbeei_contig53.4.1 vs. uniprot
Match: A0A836CDP3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDP3_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 6.210e-17
Identity = 39/71 (54.93%), Postives = 46/71 (64.79%), Query Frame = 1
Query:    1 GVIDGLPDVPRSRDDIHIVFSTDCSPYQDWQAYLLFNSARVAAHNGRITRLASGCSLEDEKRLATLHQKLP 213
            G+  G+P VPR  DDIHIVFSTDCS YQ+WQ+ L F SA  A   G +TRLASGCS      L  +H  +P
Sbjct:    2 GIAPGIPSVPRHYDDIHIVFSTDCSDYQNWQSLLFFYSAARAGQKGPVTRLASGCSEAQMAELRDVHALMP 72          
BLAST of mRNA_P-wetherbeei_contig53.4.1 vs. uniprot
Match: D8LU90_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU90_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 2.200e-15
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    1 GVIDGLPDVPRSRDDIHIVFSTDCSPYQDWQAYLLFNSARVAAHNGRITRLASGCSLEDEKRLATLHQKLP 213
            G+  G+   P S DDIH+VFSTDCSPYQ++QA +LF+SA +    GR+TR+ASGC+ ++   L     + P
Sbjct:   68 GIAPGIAAKPASADDIHVVFSTDCSPYQNYQATMLFHSAEMVGQKGRVTRVASGCTRDERLELEVFMMRQP 138          
BLAST of mRNA_P-wetherbeei_contig53.4.1 vs. uniprot
Match: A0A7S3HPB4_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HPB4_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.670e-14
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 1
Query:   22 DVPRSRDDIHIVFSTDCSPYQDWQAYLLFNSARVAAHNGRITRLASGCSLEDEKRLATLHQKLPPQ 219
            + P     +H+VFSTDCS YQ+WQ  LLF+SA+V    GRITR+ASGC    +  L  L++KL P+
Sbjct:   79 EAPEEDGQMHVVFSTDCSGYQNWQTLLLFHSAQVVGQKGRITRIASGCDATQQAELTALYKKLYPK 144          
BLAST of mRNA_P-wetherbeei_contig53.4.1 vs. uniprot
Match: D7G4L7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4L7_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 9.570e-14
Identity = 33/68 (48.53%), Postives = 46/68 (67.65%), Query Frame = 1
Query:    1 GVIDGLPDVPRSRDDIHIVFSTDCSPYQDWQAYLLFNSARVAAHNGRITRLASGCSLEDEKRLATLHQ 204
            G+  G P  P   DDIH+VFS+DC+ YQ WQA +LF+SA ++ H G IT+L SGCS E++    + H+
Sbjct:  154 GLGPGAPGFPLGEDDIHVVFSSDCTNYQAWQAVVLFHSAILSGHTGPITQLISGCSDEEQAEAESRHE 221          
BLAST of mRNA_P-wetherbeei_contig53.4.1 vs. uniprot
Match: A0A7S3ZM89_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZM89_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 5.470e-12
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 1
Query:   46 IHIVFSTDCSPYQDWQAYLLFNSARVAAHNGRITRLASGCSLEDEKRL 189
            + +VFSTDC+PYQDWQ+ ++FNSA V  H G +TR+ASGCS E E  L
Sbjct:  106 VRVVFSTDCTPYQDWQSEVVFNSADVVGHRGPVTRIASGCSPEKEAAL 153          
BLAST of mRNA_P-wetherbeei_contig53.4.1 vs. uniprot
Match: A0A7S2Q198_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q198_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.140e-11
Identity = 31/52 (59.62%), Postives = 36/52 (69.23%), Query Frame = 1
Query:   46 IHIVFSTDCSPYQDWQAYLLFNSARVAAHNGRITRLASGCSLEDEKRLATLH 201
            IHIVFSTDCSPYQ WQ+Y LF S       GRITR+ASGC+ E+E  +   H
Sbjct:  162 IHIVFSTDCSPYQHWQSYALFLSTLKIRQPGRITRIASGCTEEEELSIRKWH 213          
BLAST of mRNA_P-wetherbeei_contig53.4.1 vs. uniprot
Match: F0YDA7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDA7_AURAN)

HSP 1 Score: 67.0 bits (162), Expect = 3.470e-11
Identity = 27/57 (47.37%), Postives = 40/57 (70.18%), Query Frame = 1
Query:   31 RSRDDIHIVFSTDCSPYQDWQAYLLFNSARVAAHNGRITRLASGCSLEDEKRLATLH 201
            R  D+ H+VFSTDC  YQDWQ+ ++++SA +A   GR+TR+ASGC+  +  +L   H
Sbjct:   24 RPADEFHVVFSTDCGKYQDWQSEVVYHSATLAGQPGRVTRIASGCTDAEAAKLRARH 80          
BLAST of mRNA_P-wetherbeei_contig53.4.1 vs. uniprot
Match: A0A482SH38_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SH38_9ARCH)

HSP 1 Score: 66.2 bits (160), Expect = 3.530e-11
Identity = 30/64 (46.88%), Postives = 40/64 (62.50%), Query Frame = 1
Query:   19 PDVPRSRDDIHIVFSTDCSPYQDWQAYLLFNSARVAAHNGRITRLASGCSLEDEKRLATLHQKL 210
            P  P +    + VFSTDC+PYQDWQ+  LF+SA      G ITR+ASGC    ++ L TL++ L
Sbjct:   96 PPTPTNHAHFYTVFSTDCTPYQDWQSIFLFHSALRVKQPGIITRIASGCDQAQQEHLTTLYKTL 159          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig53.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZI64_9STRA1.950e-1857.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2XWN9_9STRA8.910e-1858.33Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A836CDP3_9STRA6.210e-1754.93Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LU90_ECTSI2.200e-1547.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3HPB4_9STRA2.670e-1450.00Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
D7G4L7_ECTSI9.570e-1448.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3ZM89_9STRA5.470e-1260.42Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
A0A7S2Q198_9STRA1.140e-1159.62Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
F0YDA7_AURAN3.470e-1147.37Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A482SH38_9ARCH3.530e-1146.88Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig53contigP-wetherbeei_contig53:10398..10634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LU90
PFAMsShK
Model size237
Max annot lvl2759|Eukaryota
KEGG koko:K20781
KEGG Pathwayko00514,map00514
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.61e-16
EggNOG OGs2CMIY@1|root,2QQG8@2759|Eukaryota
Cds size237
CAZyGT96
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186793.8906972-CDS-P-wetherbeei_contig53:10397..106341683186793.8906972-CDS-P-wetherbeei_contig53:10397..10634Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig53 10398..10634 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig53.4.1prot_P-wetherbeei_contig53.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig53 10398..10634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig53.4.1

>prot_P-wetherbeei_contig53.4.1 ID=prot_P-wetherbeei_contig53.4.1|Name=mRNA_P-wetherbeei_contig53.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=79bp
GVIDGLPDVPRSRDDIHIVFSTDCSPYQDWQAYLLFNSARVAAHNGRITR
LASGCSLEDEKRLATLHQKLPPQASPLC*
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mRNA from alignment at P-wetherbeei_contig53:10398..10634+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig53.4.1 ID=mRNA_P-wetherbeei_contig53.4.1|Name=mRNA_P-wetherbeei_contig53.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig53:10398..10634+ (Phaeothamnion wetherbeei SAG_119_79)
GGTGTCATCGACGGGCTTCCAGATGTGCCCAGAAGCAGGGATGACATCCA CATCGTGTTTTCGACGGATTGCAGTCCGTATCAAGACTGGCAGGCCTATC TGTTGTTCAACTCGGCTCGCGTTGCCGCGCACAATGGACGAATCACGCGA CTCGCCAGCGGCTGCAGCCTGGAGGACGAAAAGCGGCTCGCAACCCTACA CCAAAAGTTGCCCCCGCAGGCAAGTCCGCTGTGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig53:10398..10634+

>mRNA_P-wetherbeei_contig53.4.1 ID=mRNA_P-wetherbeei_contig53.4.1|Name=mRNA_P-wetherbeei_contig53.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig53:10398..10634+ (Phaeothamnion wetherbeei SAG_119_79)
GGTGTCATCGACGGGCTTCCAGATGTGCCCAGAAGCAGGGATGACATCCA
CATCGTGTTTTCGACGGATTGCAGTCCGTATCAAGACTGGCAGGCCTATC
TGTTGTTCAACTCGGCTCGCGTTGCCGCGCACAATGGACGAATCACGCGA
CTCGCCAGCGGCTGCAGCCTGGAGGACGAAAAGCGGCTCGCAACCCTACA
CCAAAAGTTGCCCCCGCAGGCAAGTCCGCTGTGCTGA
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