mRNA_P-wetherbeei_contig52880.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52880.1.1
Unique NamemRNA_P-wetherbeei_contig52880.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52880.1.1 vs. uniprot
Match: A0A6L7YQS5_9CHLR (Uma2 family endonuclease n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L7YQS5_9CHLR)

HSP 1 Score: 140 bits (354), Expect = 1.160e-39
Identity = 70/146 (47.95%), Postives = 99/146 (67.81%), Query Frame = 1
Query:    1 GVEHGEVQLALGSLIRVFLLSNRIGRAV-TESSIVTERKPDTVRGPDVSYYSKERLPLDKRVVGYHDEVPDLCVEVVSPSNTMKQLKAKAKEYLFAGVRLVWIIDPEDRTATVIADPLESRTLEADATLDGGAVLPGFSCKVSDLF 435
            GVEHG++ + LG  +R F+   R+G+   ++  ++ ER PDTVR PD+ + S E+ PLD+R+VGY + VPDL VE+VSPS++ + +  +A+ +L  GVRLVW+  PE+RT  V  +     TL    TLDGG VLPGFSC VSD+F
Sbjct:   38 GVEHGQIVMNLGGELRNFIRPRRLGKLFGSDGGVLLERGPDTVREPDIGFISAEKSPLDERIVGYANVVPDLAVEIVSPSDSRQSVHERAQMWLNFGVRLVWVGFPEERTVDVYPEGGTMFTLREGDTLDGGEVLPGFSCAVSDVF 183          
BLAST of mRNA_P-wetherbeei_contig52880.1.1 vs. uniprot
Match: A0A6N8Z7J1_9CHLR (Uma2 family endonuclease n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6N8Z7J1_9CHLR)

HSP 1 Score: 140 bits (354), Expect = 1.310e-39
Identity = 73/146 (50.00%), Postives = 101/146 (69.18%), Query Frame = 1
Query:    1 GVEHGEVQLALGSLIRVFLLSNRIGRAV-TESSIVTERKPDTVRGPDVSYYSKERLPLDKRVVGYHDEVPDLCVEVVSPSNTMKQLKAKAKEYLFAGVRLVWIIDPEDRTATVIADPLESRTLEADATLDGGAVLPGFSCKVSDLF 435
            G+EHGE+ + LG ++R  +  NR+GR V +++ I  ER PDTVR PD+++ S E+L LD RV GY + VPDL VE++SP++    +  KA+ +L  GVRLV +IDP+ RT TV+     ++TL    TLDGG VLPGFSC VSD+F
Sbjct:   42 GIEHGEIVMNLGGMMRNVVRPNRLGRVVGSDAGIRLERNPDTVREPDIAFISAEKLSLDTRVRGYAEVVPDLVVEIISPNDRPVAMYDKAQMWLRFGVRLVLLIDPDVRTVTVMPQDGPAQTLTDADTLDGGDVLPGFSCAVSDIF 187          
BLAST of mRNA_P-wetherbeei_contig52880.1.1 vs. uniprot
Match: A0A7Y5SGW6_9BACT (Uma2 family endonuclease n=1 Tax=Pirellulales bacterium TaxID=2715253 RepID=A0A7Y5SGW6_9BACT)

HSP 1 Score: 129 bits (324), Expect = 3.770e-35
Identity = 71/144 (49.31%), Postives = 95/144 (65.97%), Query Frame = 1
Query:   10 HGEVQLALGSLIRVFLLSNRIGR-AVTESSIVTERKPDTVRGPDVSYYSKERLP-LDKRVVGYHDEVPDLCVEVVSPSNTMKQLKAKAKEYLFAGVRLVWIIDPEDRTATVIADPLESRTLEADATLDGGAVLPGFSCKVSDLF 435
            HGEV +ALG+L+ VF+ S  +GR AV +  ++TER PDTVRGPDV+++S ERL  L  +   +    PDL VEVVSP +T +++  K   +L  GVRLVW++DPE+R ATV     E R L     L G  V+PGFSC+V +LF
Sbjct:   42 HGEVCIALGALLHVFVKSRGLGRVAVNDPGVITERDPDTVRGPDVAFWSPERLSELPNK---FTHVPPDLAVEVVSPRDTHREVLEKVLHFLDHGVRLVWVVDPEERIATVYRSRHEVRILGETEELRGEDVVPGFSCRVGELF 182          
BLAST of mRNA_P-wetherbeei_contig52880.1.1 vs. uniprot
Match: A0A5C1A876_9BACT (Uma2 family endonuclease n=1 Tax=Limnoglobus roseus TaxID=2598579 RepID=A0A5C1A876_9BACT)

HSP 1 Score: 127 bits (319), Expect = 2.140e-34
Identity = 67/143 (46.85%), Postives = 92/143 (64.34%), Query Frame = 1
Query:   10 HGEVQLALGSLIRVFLLSNRIGRAVTESSIVTERKPDTVRGPDVSYYSKERLP-LDKRVVGYHDEVPDLCVEVVSPSNTMKQLKAKAKEYLFAGVRLVWIIDPEDRTATVIADPLESRTLEADATLDGGAVLPGFSCKVSDLF 435
            HG VQ  +  L+  F+ +NR+G  VTES  V ER PDTVRGPDVS+YS  R P L      + +  PDL VEV+SPS+   +++ K +EYL  GVR+VW++DP+ +T TV A  L     ++  TLD   VLPGF+C+++D F
Sbjct:   43 HGFVQANIAILLGGFVKTNRLGWVVTESGTVLERDPDTVRGPDVSFYSITRHPDLPDE---WFEIPPDLAVEVLSPSDRRGRVREKVREYLANGVRIVWLVDPDPQTVTVYAGTLRGVEFDSTDTLDAADVLPGFTCQIADFF 182          
BLAST of mRNA_P-wetherbeei_contig52880.1.1 vs. uniprot
Match: A0A6N8VW32_9CHLR (Uma2 family endonuclease n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6N8VW32_9CHLR)

HSP 1 Score: 126 bits (316), Expect = 6.620e-34
Identity = 74/149 (49.66%), Postives = 96/149 (64.43%), Query Frame = 1
Query:    1 GVEHGEVQLALGSLIRVFLLSNRIGR-AVTESSIVTERKPDTVRGPDVSYYSKERLPLDKRVVGYHDEVPDLCVEVVSPSNTMKQLKAKAKEYLFAGVRLVWIIDPEDRTATVIADPLES---RTLEADATLDGGAVLPGFSCKVSDLF 435
            G+EHGE+  A G+ +R F    R+GR AV +  I  ER PDTVR PDV+++S  RLPLD+R  GY + +P+L VEV SP ++ +QL  KA+ +L  GVRLVW++ P++R   V A   E    R  EAD  LDG  VLPGF C VS LF
Sbjct:   39 GLEHGEIATAFGAELRGFAKPRRLGRVAVGDPGIKIERDPDTVRAPDVAFFSARRLPLDQRNPGYAEVIPELVVEVKSPRDSREQLNDKAEMWLRHGVRLVWLVYPDERA--VEAHHTEQGVIRYQEADK-LDGMDVLPGFRCAVSQLF 184          
BLAST of mRNA_P-wetherbeei_contig52880.1.1 vs. uniprot
Match: A0A7W0A161_9CHLR (Uma2 family endonuclease n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0A161_9CHLR)

HSP 1 Score: 125 bits (314), Expect = 1.290e-33
Identity = 62/144 (43.06%), Postives = 93/144 (64.58%), Query Frame = 1
Query:   10 HGEVQLALGSLIRVFLLSNRIGRA-VTESSIVTERKPDTVRGPDVSYYSKERLPLDKRVVGYHDEVPDLCVEVVSPSNTMKQLKAKAKEYLFAGVRLVWIIDPEDRTATVIADPLESRTLEADATLDGGAVLPGFSCKVSDLFM 438
            HGE+ + +G  +R +++ NR+G    +E+  +  R+PDT+  PDVS+ +  R P   + VG+ + VPDL VEVVSPS+  + + AK   YL AGVRLVW+++P  RT TV A     R ++ D TLDGG VLP F+  V+++F+
Sbjct:   39 HGEIAMTIGFHLRNYVVPNRLGTVWASETGFILRREPDTLLAPDVSFVATGRRPPVDQRVGFVNVVPDLVVEVVSPSDRRRYVSAKVTAYLDAGVRLVWVVEPRTRTVTVHASGQPERVVDEDGTLDGGDVLPDFTLAVAEVFV 182          
BLAST of mRNA_P-wetherbeei_contig52880.1.1 vs. uniprot
Match: A0A6B1D5K5_9CHLR (Uma2 family endonuclease n=1 Tax=Caldilineaceae bacterium SB0661_bin_32 TaxID=2605255 RepID=A0A6B1D5K5_9CHLR)

HSP 1 Score: 125 bits (313), Expect = 1.820e-33
Identity = 63/146 (43.15%), Postives = 95/146 (65.07%), Query Frame = 1
Query:    1 GVEHGEVQLALGSLIRVFLLSNRIGRAV-TESSIVTERKPDTVRGPDVSYYSKERLPLDKRVVGYHDEVPDLCVEVVSPSNTMKQLKAKAKEYLFAGVRLVWIIDPEDRTATVIADPLESRTLEADATLDGGAVLPGFSCKVSDLF 435
            G+ HGE+ + LG  +R F+   R+GR V ++S ++ ER PDTVR PD+++ S ++LPL+ R+ G  +  PDL VE+VSPS+  +++  KA+ ++  GV LVW++DPE+R   V        +L  +  LDGG VLPGFS  V D+F
Sbjct:   38 GLTHGEIVMNLGGALRNFVRPRRLGRLVGSDSGMMLERDPDTVREPDIAFISAQKLPLNVRLSGCFEGAPDLAVEIVSPSDGPREVYHKARMWISFGVPLVWVVDPENRAVEVHRPNQPLLSLTENEILDGGEVLPGFSYPVRDVF 183          
BLAST of mRNA_P-wetherbeei_contig52880.1.1 vs. uniprot
Match: A0A845CVV1_9CHLR (Uma2 family endonuclease n=1 Tax=Caldilineaceae bacterium SB0662_bin_25 TaxID=2605257 RepID=A0A845CVV1_9CHLR)

HSP 1 Score: 124 bits (312), Expect = 2.440e-33
Identity = 65/146 (44.52%), Postives = 93/146 (63.70%), Query Frame = 1
Query:    1 GVEHGEVQLALGSLIRVFLLSNRIGRAV-TESSIVTERKPDTVRGPDVSYYSKERLPLDKRVVGYHDEVPDLCVEVVSPSNTMKQLKAKAKEYLFAGVRLVWIIDPEDRTATVIADPLESRTLEADATLDGGAVLPGFSCKVSDLF 435
            G+ HG+  + L  L+  F+   ++G  + ++   + E++PDTVR PDV++ S  RLPLD+ V GY D  PDL +E+VSPS++ +QL  KA+ ++  GV LVW +DP+ RT  V         L  D TLDGG VLPGF+C V+DLF
Sbjct:   38 GIRHGKTVVNLIVLLAGFVEPRQMGTILASDVGFLLEKEPDTVREPDVAFISAHRLPLDQDVPGYFDGPPDLAIEIVSPSDSPRQLFDKARMWISFGVPLVWTVDPQARTIDVHQPNQPLIRLSTDDTLDGGQVLPGFTCTVADLF 183          
BLAST of mRNA_P-wetherbeei_contig52880.1.1 vs. uniprot
Match: A0A6I4ZB14_9CHLR (Uma2 family endonuclease n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A6I4ZB14_9CHLR)

HSP 1 Score: 124 bits (312), Expect = 3.690e-33
Identity = 64/146 (43.84%), Postives = 92/146 (63.01%), Query Frame = 1
Query:    1 GVEHGEVQLALGSLIRVFLLSNRIGRAV-TESSIVTERKPDTVRGPDVSYYSKERLPLDKRVVGYHDEVPDLCVEVVSPSNTMKQLKAKAKEYLFAGVRLVWIIDPEDRTATVIADPLESRTLEADATLDGGAVLPGFSCKVSDLF 435
            G EHGE+ + LG+ +  F+    +GR + + S +  +R PDTVR PDV++++   +PLD RV GY +  PDL VE+VSPS++ +++  KA  +L  GVRLVW++ PE RT  V     E  TL     LDG  VL GF+C+VS +F
Sbjct:   46 GQEHGEIAMRLGAALLGFIEPRGLGRVMGSGSGVWLDRDPDTVREPDVAFFAVGTIPLDARVTGYAEVAPDLVVEIVSPSDSRREVHDKAHMWLNHGVRLVWVVQPETRTVDVYRPDGEIATLGEQDALDGQDVLSGFTCEVSAIF 191          
BLAST of mRNA_P-wetherbeei_contig52880.1.1 vs. uniprot
Match: A0A7W1C5L3_9BACT (Uma2 family endonuclease n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7W1C5L3_9BACT)

HSP 1 Score: 123 bits (309), Expect = 7.740e-33
Identity = 63/145 (43.45%), Postives = 87/145 (60.00%), Query Frame = 1
Query:    1 GVEHGEVQLALGSLIRVFLLSNRIGRAV-TESSIVTERKPDTVRGPDVSYYSKERLPLDKRVVGYHDEVPDLCVEVVSPSNTMKQLKAKAKEYLFAGVRLVWIIDPEDRTATVIADPLESRTLEADATLDGGAVLPGFSCKVSDL 432
            G EHG + + + SL+  F+    +G  V  E+  V   KP TVR PDV++ +  RL  D   VG+    PDL VE+VSPSNT+ +++ K  +YL AG RLVW++DP  R+ T      E R L  +  +DGGAVLPGF  K+S+L
Sbjct:   42 GFEHGRIAVQIASLLHAFVRERELGTVVGAETGFVLHDKPPTVRAPDVAFVADGRLASDP--VGFAPLAPDLAVEIVSPSNTVSEIQGKVVDYLDAGTRLVWVVDPRYRSITAYLSRQEIRLLTEEEEIDGGAVLPGFRIKISEL 184          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52880.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L7YQS5_9CHLR1.160e-3947.95Uma2 family endonuclease n=1 Tax=Chloroflexi bacte... [more]
A0A6N8Z7J1_9CHLR1.310e-3950.00Uma2 family endonuclease n=1 Tax=Chloroflexi bacte... [more]
A0A7Y5SGW6_9BACT3.770e-3549.31Uma2 family endonuclease n=1 Tax=Pirellulales bact... [more]
A0A5C1A876_9BACT2.140e-3446.85Uma2 family endonuclease n=1 Tax=Limnoglobus roseu... [more]
A0A6N8VW32_9CHLR6.620e-3449.66Uma2 family endonuclease n=1 Tax=Chloroflexi bacte... [more]
A0A7W0A161_9CHLR1.290e-3343.06Uma2 family endonuclease n=1 Tax=Chloroflexia bact... [more]
A0A6B1D5K5_9CHLR1.820e-3343.15Uma2 family endonuclease n=1 Tax=Caldilineaceae ba... [more]
A0A845CVV1_9CHLR2.440e-3344.52Uma2 family endonuclease n=1 Tax=Caldilineaceae ba... [more]
A0A6I4ZB14_9CHLR3.690e-3343.84Uma2 family endonuclease n=1 Tax=Dehalococcoidia b... [more]
A0A7W1C5L3_9BACT7.740e-3343.45Uma2 family endonuclease n=1 Tax=Gemmatimonadetes ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52880contigP-wetherbeei_contig52880:1..441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog357808.RoseRS_1412
PFAMsUma2
Model size441
Max annot lvl32061|Chloroflexia
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.88e-32
EggNOG OGsCOG4636@1|root,COG4636@2|Bacteria,2G90F@200795|Chloroflexi,377N7@32061|Chloroflexia
DescriptionPutative restriction endonuclease
Cds size441
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186792.5033786-CDS-P-wetherbeei_contig52880:0..4411683186792.5033786-CDS-P-wetherbeei_contig52880:0..441Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52880 1..441 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52880.1.1prot_P-wetherbeei_contig52880.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52880 1..441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52880.1.1

>prot_P-wetherbeei_contig52880.1.1 ID=prot_P-wetherbeei_contig52880.1.1|Name=mRNA_P-wetherbeei_contig52880.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=147bp
GVEHGEVQLALGSLIRVFLLSNRIGRAVTESSIVTERKPDTVRGPDVSYY
SKERLPLDKRVVGYHDEVPDLCVEVVSPSNTMKQLKAKAKEYLFAGVRLV
WIIDPEDRTATVIADPLESRTLEADATLDGGAVLPGFSCKVSDLFM*
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mRNA from alignment at P-wetherbeei_contig52880:1..441+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52880.1.1 ID=mRNA_P-wetherbeei_contig52880.1.1|Name=mRNA_P-wetherbeei_contig52880.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=441bp|location=Sequence derived from alignment at P-wetherbeei_contig52880:1..441+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGTCGAACACGGTGAGGTTCAGCTGGCGCTGGGCAGTCTCATTCGTGT GTTCCTACTTTCCAATCGGATCGGTCGCGCCGTTACCGAGAGCAGCATCG TCACCGAGCGCAAGCCGGACACGGTGCGCGGGCCTGATGTCAGCTATTAC AGCAAGGAGCGGTTGCCCCTCGACAAGCGCGTGGTCGGATACCACGACGA AGTGCCGGACCTCTGCGTTGAAGTTGTGTCCCCGTCGAACACGATGAAGC AACTCAAGGCCAAGGCGAAAGAGTACCTGTTCGCGGGCGTTCGGTTGGTG TGGATCATCGACCCCGAAGACCGGACGGCTACAGTGATTGCCGATCCGCT CGAATCCCGCACGCTCGAAGCCGATGCCACCCTCGACGGTGGGGCCGTGC TGCCCGGCTTCTCCTGCAAGGTGTCCGATCTGTTCATGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52880:1..441+

>mRNA_P-wetherbeei_contig52880.1.1 ID=mRNA_P-wetherbeei_contig52880.1.1|Name=mRNA_P-wetherbeei_contig52880.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=441bp|location=Sequence derived from alignment at P-wetherbeei_contig52880:1..441+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGTCGAACACGGTGAGGTTCAGCTGGCGCTGGGCAGTCTCATTCGTGT
GTTCCTACTTTCCAATCGGATCGGTCGCGCCGTTACCGAGAGCAGCATCG
TCACCGAGCGCAAGCCGGACACGGTGCGCGGGCCTGATGTCAGCTATTAC
AGCAAGGAGCGGTTGCCCCTCGACAAGCGCGTGGTCGGATACCACGACGA
AGTGCCGGACCTCTGCGTTGAAGTTGTGTCCCCGTCGAACACGATGAAGC
AACTCAAGGCCAAGGCGAAAGAGTACCTGTTCGCGGGCGTTCGGTTGGTG
TGGATCATCGACCCCGAAGACCGGACGGCTACAGTGATTGCCGATCCGCT
CGAATCCCGCACGCTCGAAGCCGATGCCACCCTCGACGGTGGGGCCGTGC
TGCCCGGCTTCTCCTGCAAGGTGTCCGATCTGTTCATGTGA
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