mRNA_P-wetherbeei_contig5284.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5284.1.1
Unique NamemRNA_P-wetherbeei_contig5284.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5284.1.1 vs. uniprot
Match: A0A6H5K0E6_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0E6_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.190e-19
Identity = 65/150 (43.33%), Postives = 84/150 (56.00%), Query Frame = 1
Query:   19 DASR-RSGGGDDLMSRLMAKTYVQVRVRADGPTKVLELLEQGGDDXXXXXXXXXPASVLSLPHFGAGGGTGGSMLSLSHRGGGGRDTVVATA-RSPVLTLFMAQAYSLGVSVVDDAPKEVLYVYLEGLKFAMTKTREHRTASLTVEGLQV 462
            DAS  R  GG+ +MSRL AK YV VRVRADGPTKVLEL+E+ G++          A++       +GGG           G G   T    A  S V +++M Q   +GVS+VDD P E+LY    G+K  +T T  HR  S+TV+GLQV
Sbjct: 1738 DASALRLEGGEAIMSRLRAKVYVNVRVRADGPTKVLELVEEAGEEMEDDDGAVA-AALGKKGRENSGGGP-------ESEGAGTLATAAGAADASRVTSVYMLQMAGIGVSLVDDRPLELLYFLACGIKADITATARHRMLSITVDGLQV 1879          
BLAST of mRNA_P-wetherbeei_contig5284.1.1 vs. uniprot
Match: D8LME2_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME2_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 8.310e-11
Identity = 54/137 (39.42%), Postives = 71/137 (51.82%), Query Frame = 1
Query:    7 GGEEDASRRSGGGDDLMSRLMAKTYVQVRVRADGPTKVLELLEQGGDDXXXXXXXXXPASVLSLPHFGAGGGTGGSMLSLSHRGGGGRDTVVATARSPVLTLFMAQAYSLGVSVVDDAPKEVLYVYLEGLKFAMTKT 417
            GG + ++ R  GG+ +MSRL AK YV VRVRADGPTKVLEL+E+ G++  XXXXXXX                                       S V +++M Q   +GVS+VDD P E+LY    G+K  +T T
Sbjct: 1408 GGGDVSAPRLEGGEAIMSRLRAKVYVNVRVRADGPTKVLELVEEAGEEVEXXXXXXXXXXXXXXXXXXX------XXXXXXXXXXXXXXXXXXXDASSVTSVYMLQMAGIGVSLVDDRPLELLYFLACGIKADITAT 1538          
BLAST of mRNA_P-wetherbeei_contig5284.1.1 vs. uniprot
Match: A0A3R7JGP2_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JGP2_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.460e-9
Identity = 46/144 (31.94%), Postives = 69/144 (47.92%), Query Frame = 1
Query:   49 DLMSRLM-AKTYVQVRVRADGPTKVLELLEQGGDDXXXXXXXXXPASVLSLPHFGAGGGTGGSMLSLSHRGGGGRDTVVATARSPVLTLFMAQAYSL-----GVSVVDDAPKEVLYVYLEGLKFAMTKTREHRTASLTVEGLQV 462
            DL+  +  AKTYV VR+RADGPTKVLEL E G +D          +S  S            S  S          T   T+ S + +L    A+ L     GVS V++ P E++Y+YL G+    ++   +   ++T++ LQ+
Sbjct:  347 DLLPLIQNAKTYVHVRIRADGPTKVLELFEGGEEDFDEKESKYELSSAASA-----------SSES---------PTASETSMSAIESLTSGMAFHLRIDGFGVSCVNELPMELVYIYLGGISLRYSRVNSNMRMNITLDDLQI 470          
BLAST of mRNA_P-wetherbeei_contig5284.1.1 vs. uniprot
Match: A0A3F2RL93_9STRA (Mannosyltransferase n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RL93_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.500e-9
Identity = 46/144 (31.94%), Postives = 69/144 (47.92%), Query Frame = 1
Query:   49 DLMSRLM-AKTYVQVRVRADGPTKVLELLEQGGDDXXXXXXXXXPASVLSLPHFGAGGGTGGSMLSLSHRGGGGRDTVVATARSPVLTLFMAQAYSL-----GVSVVDDAPKEVLYVYLEGLKFAMTKTREHRTASLTVEGLQV 462
            DL+  +  AKTYV VR+RADGPTKVLEL E G +D          +S  S            S  S          T   T+ S + +L    A+ L     GVS V++ P E++Y+YL G+    ++   +   ++T++ LQ+
Sbjct:  440 DLLPLIQNAKTYVHVRIRADGPTKVLELFEGGEEDFDEKESKYELSSAASA-----------SSES---------PTASETSMSAIESLTSGMAFHLRIDGFGVSCVNELPMELVYIYLGGISLRYSRVNSNMRMNITLDDLQI 563          
BLAST of mRNA_P-wetherbeei_contig5284.1.1 vs. uniprot
Match: A0A2P4WYN4_9STRA (Vacuolar protein sorting-associated protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WYN4_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 8.700e-9
Identity = 46/146 (31.51%), Postives = 69/146 (47.26%), Query Frame = 1
Query:   49 DLMSRLM-AKTYVQVRVRADGPTKVLELLEQGGDDXXXXXXXXXPASVLSLPHFGAGGGTGGSMLSLSHRGGGGRDTVVATARSP--VLTLFMAQAYSL-----GVSVVDDAPKEVLYVYLEGLKFAMTKTREHRTASLTVEGLQV 462
            DL+ ++  AKTYV VR+RADGPTKVLEL E G +D                           S   LS       D+  A+  S   V +L    A+ L     GVS V++ P E++Y+YL G+    ++   +   ++T++ LQ+
Sbjct: 1677 DLLPQVQNAKTYVHVRIRADGPTKVLELFEGGEEDFDEKD----------------------SKYELSSTASASSDSPTASEASTNAVESLTSGMAFHLRVDGVGVSCVNELPMELVYIYLGGISLHYSRVNSNMRMNITLDDLQI 1800          
BLAST of mRNA_P-wetherbeei_contig5284.1.1 vs. uniprot
Match: A0A835ZA73_9STRA (PH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA73_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 5.480e-8
Identity = 61/148 (41.22%), Postives = 75/148 (50.68%), Query Frame = 1
Query:   19 DASRRSGGGDDLMSRLMAKTYVQVRVRADGPTKVLELLEQGGDDXXXXXXXXXPASVLSLPHFGAGGGTGGSMLSLSHRGGGGRDTVVATARSPVLTLFMAQAYSLGVSVVDDAPKEVLYVYLEGLKFAMTKTREHRTASLTVEGLQV 462
            +A    GGG D  +   A+T V+VRVRADGPTKVLEL E G   XXXXXXXXX                             G     A  R  V+T+ +     LGVS+VDDAPKE++YVY+EG++            SLTVE LQ+
Sbjct: 1650 NAGASGGGGGDTAADF-ARTTVRVRVRADGPTKVLELSEDGXXXXXXXXXXXXXXXXXXXX---------------------GDPAAAAVTR--VVTVNIR---GLGVSLVDDAPKELIYVYMEGVQ------------SLTVERLQI 1758          
BLAST of mRNA_P-wetherbeei_contig5284.1.1 vs. uniprot
Match: A0A6A3U5U2_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3U5U2_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 7.570e-8
Identity = 43/138 (31.16%), Postives = 64/138 (46.38%), Query Frame = 1
Query:   70 AKTYVQVRVRADGPTKVLELLEQGGDDXXXXXXXXXPASVLSLPHFGAGGGTGGSMLSLSHRGGGGRDTVVATARSP----VLTLFMA---QAYSLGVSVVDDAPKEVLYVYLEGLKFAMTKTREHRTASLTVEGLQV 462
            AKTYV VR+RADGPTKVLEL E G +D                           S   LS       D+  A+  S      LT  MA   +   +G+S V++ P E++YVY+ G+    ++   +   ++T++ LQ+
Sbjct: 2937 AKTYVHVRIRADGPTKVLELFEGGEEDFDEKE----------------------SKYELSSTASASSDSPTASETSTNAFDSLTSGMALHLRVDGIGISCVNELPMELVYVYMGGISLHYSRVNSNMRMNITLDDLQI 3052          
BLAST of mRNA_P-wetherbeei_contig5284.1.1 vs. uniprot
Match: A0A8J5JDU7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JDU7_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.400e-7
Identity = 43/146 (29.45%), Postives = 70/146 (47.95%), Query Frame = 1
Query:   49 DLMSRLM-AKTYVQVRVRADGPTKVLELLEQGGDDXXXXXXXXXPASVLSLPHFGAGGGTGGSMLSLSHRGGGGRDTVVATARSPV----LTLFMA---QAYSLGVSVVDDAPKEVLYVYLEGLKFAMTKTREHRTASLTVEGLQV 462
            DL+ ++  AKTYV VR+RADGPTKVLEL E G +D          +S  S+                        D+  A+  S      LT  MA   +   +G+S V++ P E++Y+YL G+    ++   +   ++T++ +Q+
Sbjct: 2517 DLVPQVQNAKTYVHVRIRADGPTKVLELFEGGEEDFDERENKYELSSTASVSS----------------------DSPTASETSATAFESLTSGMALHLRVDGVGISCVNELPMELVYIYLGGISLHYSRVNSNMRMNVTLDDVQI 2640          
BLAST of mRNA_P-wetherbeei_contig5284.1.1 vs. uniprot
Match: G4YH06_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YH06_PHYSP)

HSP 1 Score: 60.1 bits (144), Expect = 1.400e-7
Identity = 43/146 (29.45%), Postives = 69/146 (47.26%), Query Frame = 1
Query:   49 DLMSRLM-AKTYVQVRVRADGPTKVLELLEQGGDDXXXXXXXXXPASVLSLPHFGAGGGTGGSMLSLSHRGGGGRDTVVATARSP----VLTLFMA---QAYSLGVSVVDDAPKEVLYVYLEGLKFAMTKTREHRTASLTVEGLQV 462
            DL+ ++  AKTYV VR+RADGPTKVLEL E G +D                           +   LS       D+  A+  S      LT  MA   +   +G+S V++ P E++Y+Y+ G+    ++   +   ++T++ LQ+
Sbjct: 3563 DLLPQVQNAKTYVHVRIRADGPTKVLELFEGGEEDFDEKE----------------------NKYELSSTASASSDSPTASETSTNAFDSLTSGMALHLRLDGIGISCVNELPMELVYIYMGGISLHYSRVNSNMRMNITLDDLQI 3686          
BLAST of mRNA_P-wetherbeei_contig5284.1.1 vs. uniprot
Match: A0A5D6XG13_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XG13_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.400e-7
Identity = 44/145 (30.34%), Postives = 60/145 (41.38%), Query Frame = 1
Query:   70 AKTYVQVRVRADGPTKVLELLEQGGDDXXXXXXXXXPASVLSLPHFGAGGGTGGSMLSLSHRGGGGRDTVVATARSPVLTLFMAQAY--------------SLGVSVVDDAPKEVLYVYLEGLKFAMTKTREHRTASLTVEGLQV 462
            AKTYV VRVRADGPTKVLEL E G +D          +S  S                             A + SP  +     A+              SLG+S V++ P E++YVY  G+    T+       +LT++ +QV
Sbjct: 3633 AKTYVHVRVRADGPTKVLELFEGGEEDFDEKDSKHELSSAAS-----------------------------AASESPTASETSTNAFEALSNGVSINLRLDSLGISCVNELPMELVYVYFAGISLHYTRVNAKMRLNLTLDEVQV 3748          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5284.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K0E6_9PHAE1.190e-1943.33PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LME2_ECTSI8.310e-1139.42SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A3R7JGP2_9STRA2.460e-931.94Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A3F2RL93_9STRA2.500e-931.94Mannosyltransferase n=1 Tax=Phytophthora kernoviae... [more]
A0A2P4WYN4_9STRA8.700e-931.51Vacuolar protein sorting-associated protein (Fragm... [more]
A0A835ZA73_9STRA5.480e-841.22PH domain-containing protein n=1 Tax=Tribonema min... [more]
A0A6A3U5U2_9STRA7.570e-831.16Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A8J5JDU7_9STRA1.400e-729.45Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
G4YH06_PHYSP1.400e-729.45Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A5D6XG13_9STRA1.400e-730.34Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5284contigP-wetherbeei_contig5284:117..749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LME2
PFAMsATG_C,Chorein_N,PH,SHR-BD,VPS13,VPS13_C,VPS13_mid_rpt
Model size462
Max annot lvl2759|Eukaryota
KEGG koko:K19525,ko:K19527
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.36e-11
EggNOG OGsKOG1796@1|root,KOG1796@2759|Eukaryota
Descriptionprotein transport
Cds size462
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186791.9897754-CDS-P-wetherbeei_contig5284:116..4911683186791.9897754-CDS-P-wetherbeei_contig5284:116..491Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5284 117..491 -
1683186791.9993567-CDS-P-wetherbeei_contig5284:662..7491683186791.9993567-CDS-P-wetherbeei_contig5284:662..749Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5284 663..749 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5284.1.1prot_P-wetherbeei_contig5284.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5284 117..749 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5284.1.1

>prot_P-wetherbeei_contig5284.1.1 ID=prot_P-wetherbeei_contig5284.1.1|Name=mRNA_P-wetherbeei_contig5284.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=154bp
AFGGEEDASRRSGGGDDLMSRLMAKTYVQVRVRADGPTKVLELLEQGGDD
GDDDDDEDDPASVLSLPHFGAGGGTGGSMLSLSHRGGGGRDTVVATARSP
VLTLFMAQAYSLGVSVVDDAPKEVLYVYLEGLKFAMTKTREHRTASLTVE
GLQV
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mRNA from alignment at P-wetherbeei_contig5284:117..749-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5284.1.1 ID=mRNA_P-wetherbeei_contig5284.1.1|Name=mRNA_P-wetherbeei_contig5284.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=633bp|location=Sequence derived from alignment at P-wetherbeei_contig5284:117..749- (Phaeothamnion wetherbeei SAG_119_79)
GCGTTTGGTGGGGAGGAGGACGCCAGCCGGCGGTCGGGCGGTGGCGATGA CCTCATGTCGCGGCTCATGGCCAAGACTTATGTCCAGGTAATGTCAGGGC AGGAACGAAGGAACTTCCACCGACTTTAAGCAGCGCTGGAACGAGCTTTC TTCTCTTTTACTCTTTTGAGCGGCAGAGTCCCGCCGCCCGCTGCCTCATT GCCAGCCGACTCCGTTTGTTCGTCTGTCGTTGTTCGTCTGGTCTGCCGCG CCGTGCAGGTACGGGTGCGCGCCGACGGGCCGACCAAGGTGCTAGAGCTC CTGGAGCAGGGCGGCGATGACGGCGACGACGACGACGACGAGGACGATCC GGCCTCCGTCCTCTCTCTCCCCCACTTCGGCGCCGGCGGCGGCACTGGCG GCTCGATGCTGTCGCTGTCGCACCGCGGCGGCGGTGGGCGGGACACAGTG GTGGCGACGGCGCGGTCGCCGGTGCTGACGCTGTTCATGGCACAGGCGTA CTCACTGGGCGTGAGTGTGGTGGACGACGCGCCCAAGGAGGTGCTGTACG TGTACCTGGAGGGGCTGAAGTTCGCGATGACCAAGACGCGGGAGCACCGG ACGGCGTCGCTCACCGTCGAAGGGCTGCAGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5284:117..749-

>mRNA_P-wetherbeei_contig5284.1.1 ID=mRNA_P-wetherbeei_contig5284.1.1|Name=mRNA_P-wetherbeei_contig5284.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig5284:117..749- (Phaeothamnion wetherbeei SAG_119_79)
GCGTTTGGTGGGGAGGAGGACGCCAGCCGGCGGTCGGGCGGTGGCGATGA
CCTCATGTCGCGGCTCATGGCCAAGACTTATGTCCAGGTACGGGTGCGCG
CCGACGGGCCGACCAAGGTGCTAGAGCTCCTGGAGCAGGGCGGCGATGAC
GGCGACGACGACGACGACGAGGACGATCCGGCCTCCGTCCTCTCTCTCCC
CCACTTCGGCGCCGGCGGCGGCACTGGCGGCTCGATGCTGTCGCTGTCGC
ACCGCGGCGGCGGTGGGCGGGACACAGTGGTGGCGACGGCGCGGTCGCCG
GTGCTGACGCTGTTCATGGCACAGGCGTACTCACTGGGCGTGAGTGTGGT
GGACGACGCGCCCAAGGAGGTGCTGTACGTGTACCTGGAGGGGCTGAAGT
TCGCGATGACCAAGACGCGGGAGCACCGGACGGCGTCGCTCACCGTCGAA
GGGCTGCAGGTG
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