mRNA_P-wetherbeei_contig52737.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig52737.1.1 vs. uniprot
Match: UPI001986CDD9 (MerR family DNA-binding transcriptional regulator n=1 Tax=Prolixibacteraceae bacterium TaxID=2053594 RepID=UPI001986CDD9) HSP 1 Score: 211 bits (537), Expect = 2.650e-68 Identity = 112/128 (87.50%), Postives = 120/128 (93.75%), Query Frame = 1
Query: 4 MADTTFTITELAREFGLTTRAIRFYEDHGLIAPSRAGRNRVYGNRDKVRLKLTLRGKRLGLSLLEIRELIDMYDAARDERAQVERLQEVLRKRRSILEQQREDIEVVLGEIAAFEAQCGKFLDAGKKA 387
MADTT+TITELAREFGLTTRAIRFYEDHGLIAP+RAGRNRVYG+RDKVRLKLTLRGKRLGLSL EIRELID+YDAA+DERAQVERLQ+VL KRR+ILEQQREDIE VLGEIAAFE QC +FLD KA
Sbjct: 1 MADTTYTITELAREFGLTTRAIRFYEDHGLIAPTRAGRNRVYGSRDKVRLKLTLRGKRLGLSLSEIRELIDIYDAAKDERAQVERLQQVLHKRRTILEQQREDIEAVLGEIAAFEEQCRQFLDGKAKA 128
BLAST of mRNA_P-wetherbeei_contig52737.1.1 vs. uniprot
Match: UPI00145995B1 (MerR family DNA-binding transcriptional regulator n=1 Tax=Azoarcus taiwanensis TaxID=666964 RepID=UPI00145995B1) HSP 1 Score: 157 bits (396), Expect = 9.370e-47 Identity = 83/118 (70.34%), Postives = 94/118 (79.66%), Query Frame = 1
Query: 16 TFTITELAREFGLTTRAIRFYEDHGLIAPSRAGRNRVYGNRDKVRLKLTLRGKRLGLSLLEIRELIDMYDAARDERAQVERLQEVLRKRRSILEQQREDIEVVLGEIAAFEAQCGKFL 369
T+TITELAREF +T RAIRFYEDHGL+ P+RAGR RVY D+ RLKLTLRGKRLGLSL EIRELIDMYD R+ Q+ERL +VL +RR+ LEQQRED+E VLGEIA E QC L
Sbjct: 6 TYTITELAREFNVTPRAIRFYEDHGLLTPARAGRARVYSKADRTRLKLTLRGKRLGLSLAEIRELIDMYDGVRNSAPQLERLLKVLAERRATLEQQREDLEAVLGEIAMLEVQCTNLL 123
BLAST of mRNA_P-wetherbeei_contig52737.1.1 vs. uniprot
Match: A0A838LY92_9RHOO (MerR family DNA-binding transcriptional regulator n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A838LY92_9RHOO) HSP 1 Score: 154 bits (389), Expect = 7.960e-46 Identity = 86/133 (64.66%), Postives = 100/133 (75.19%), Query Frame = 1
Query: 4 MADTTFTITELAREFGLTTRAIRFYEDHGLIAPSRAGRNRVYGNRDKVRLKLTLRGKRLGLSLLEIRELIDMYDAARDERAQVERLQEVLRKRRSILEQQREDIEVVLGEIAAFEAQCGKFLDAGKKAPKARK 402
M + T+TITELAREF LT RAIR+YED GLI P RAG RVY RD+ RL+LTLRGKRLGLSL IRELIDMYD A D+ +Q+ +L EVL +RR+ LEQQREDI VL EI AFE QC LDA +K + R+
Sbjct: 1 MIEPTYTITELAREFELTPRAIRYYEDQGLITPQRAGVQRVYTKRDRTRLRLTLRGKRLGLSLAAIRELIDMYDTAPDQSSQLVKLLEVLARRRAKLEQQREDIAAVLEEIDAFEQQCRGLLDAAEKPARRRR 133
BLAST of mRNA_P-wetherbeei_contig52737.1.1 vs. uniprot
Match: A0A5C7EM26_9PROT (MerR family DNA-binding transcriptional regulator n=1 Tax=Pelomicrobium methylotrophicum TaxID=2602750 RepID=A0A5C7EM26_9PROT) HSP 1 Score: 154 bits (389), Expect = 9.890e-46 Identity = 84/132 (63.64%), Postives = 102/132 (77.27%), Query Frame = 1
Query: 1 DMADTTFTITELAREFGLTTRAIRFYEDHGLIAPSRAGRNRVYGNRDKVRLKLTLRGKRLGLSLLEIRELIDMYDAARDERAQVERLQEVLRKRRSILEQQREDIEVVLGEIAAFEAQCGKFLD--AGKKAP 390
+M T+TITELAREF +TTR IRFYED GL+ PSR GR RVY +RD+VRLKLTLRGKRLG SL EI+EL D+YD+AR E AQ+E+ +L KRR+ LEQQR+DI+ +L EIAAFE QC + L+ AG P
Sbjct: 6 NMKKATYTITELAREFDVTTRTIRFYEDQGLLNPSRNGRRRVYSHRDRVRLKLTLRGKRLGFSLSEIKELFDLYDSARGEIAQLEQFLIILGKRRAALEQQRQDIDAMLAEIAAFEKQCRRMLEEKAGANRP 137
BLAST of mRNA_P-wetherbeei_contig52737.1.1 vs. uniprot
Match: A0A5C1E5U4_9RHOO (Transcriptional regulator, MerR family n=1 Tax=Oryzomicrobium terrae TaxID=1735038 RepID=A0A5C1E5U4_9RHOO) HSP 1 Score: 150 bits (380), Expect = 2.310e-44 Identity = 82/119 (68.91%), Postives = 95/119 (79.83%), Query Frame = 1
Query: 16 TFTITELAREFGLTTRAIRFYEDHGLIAPSRAGRNRVYGNRDKVRLKLTLRGKRLGLSLLEIRELIDMYDAAR-DERAQVERLQEVLRKRRSILEQQREDIEVVLGEIAAFEAQCGKFL 369
T+TI+ELAREF +T R IR+YED GLIAPSR GRNRVY RD++RLKL LRGKRLG+SL EIRE+IDMYD R DE Q+ R +VL+KRR+ L QQREDIE VLGEI FEAQC + L
Sbjct: 6 TYTISELAREFDITPRTIRYYEDQGLIAPSREGRNRVYSRRDRIRLKLALRGKRLGISLAEIREMIDMYDIGRGDEVHQLARFLDVLQKRRAALLQQREDIEAVLGEIDTFEAQCRQML 124
BLAST of mRNA_P-wetherbeei_contig52737.1.1 vs. uniprot
Match: A0A7Y8M4K1_9RHOO (MerR family DNA-binding transcriptional regulator n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A7Y8M4K1_9RHOO) HSP 1 Score: 150 bits (378), Expect = 3.520e-44 Identity = 82/123 (66.67%), Postives = 98/123 (79.67%), Query Frame = 1
Query: 13 TTFTITELAREFGLTTRAIRFYEDHGLIAPSRAGRNRVYGNRDKVRLKLTLRGKRLGLSLLEIRELIDMYDAARDERAQVERLQEVLRKRRSILEQQREDIEVVLGEIAAFEAQCGKFLDAGK 381
T+++I +LAREFG+T R IR+YED GL+ P+RAG R+Y RD+ RLKLTLRGKRLGLSL EIRELIDMYD A E +Q+ RL EVL ++R+ L QQREDIE VLGE+ AFEAQC LDAGK
Sbjct: 6 TSYSIADLAREFGVTPRTIRYYEDQGLLNPARAGGQRIYSKRDRTRLKLTLRGKRLGLSLAEIRELIDMYDTA-PETSQLARLIEVLGRQRAKLIQQREDIEAVLGELDAFEAQCRALLDAGK 127
BLAST of mRNA_P-wetherbeei_contig52737.1.1 vs. uniprot
Match: A0A2N2TKS3_9PROT (MerR family transcriptional regulator n=1 Tax=Betaproteobacteria bacterium HGW-Betaproteobacteria-14 TaxID=2013705 RepID=A0A2N2TKS3_9PROT) HSP 1 Score: 149 bits (376), Expect = 7.780e-44 Identity = 80/118 (67.80%), Postives = 92/118 (77.97%), Query Frame = 1
Query: 16 TFTITELAREFGLTTRAIRFYEDHGLIAPSRAGRNRVYGNRDKVRLKLTLRGKRLGLSLLEIRELIDMYDAARDERAQVERLQEVLRKRRSILEQQREDIEVVLGEIAAFEAQCGKFL 369
TFTITELAREF LT RAIR+YED GLIAP RAG+NRVY RD+ RLKLTLRG+RLGLSL EIRELID+YD RD+R Q+ + VL RR+ LEQQREDIE VL EI + E + + L
Sbjct: 6 TFTITELAREFDLTPRAIRYYEDQGLIAPQRAGQNRVYSKRDRTRLKLTLRGRRLGLSLAEIRELIDLYDVGRDQRTQLSKFLAVLAARRAALEQQREDIEAVLTEIVSLEQRAHELL 123
BLAST of mRNA_P-wetherbeei_contig52737.1.1 vs. uniprot
Match: A0A5H2YF60_9RHOO (HTH merR-type domain-containing protein n=3 Tax=Betaproteobacteria TaxID=28216 RepID=A0A5H2YF60_9RHOO) HSP 1 Score: 150 bits (379), Expect = 1.040e-43 Identity = 83/130 (63.85%), Postives = 97/130 (74.62%), Query Frame = 1
Query: 7 ADTTFTITELAREFGLTTRAIRFYEDHGLIAPSRAGRNRVYGNRDKVRLKLTLRGKRLGLSLLEIRELIDMYDAARDERAQVERLQEVLRKRRSILEQQREDIEVVLGEIAAFEAQCGKFLDAGKKAPKA 396
A TFTI++LAREF +T R IRF+ED GL+AP+R GRNRVY RD+ RLKL LRGKRLGLSL EIR+LIDMYD ARDE Q+ RL +VL +RR+ LEQQREDIE VL EI EA C + L + KA
Sbjct: 37 ATPTFTISDLAREFNITPRTIRFWEDQGLLAPNREGRNRVYTKRDRTRLKLALRGKRLGLSLAEIRDLIDMYDVARDETDQLTRLLDVLSERRAALEQQREDIEAVLAEIETIEAVCREHLVEAEALEKA 166
BLAST of mRNA_P-wetherbeei_contig52737.1.1 vs. uniprot
Match: A0A2T4ICX1_9RHOO (MerR family transcriptional regulator n=1 Tax=Thauera lacus TaxID=2136175 RepID=A0A2T4ICX1_9RHOO) HSP 1 Score: 148 bits (374), Expect = 2.070e-43 Identity = 83/132 (62.88%), Postives = 97/132 (73.48%), Query Frame = 1
Query: 7 ADTTFTITELAREFGLTTRAIRFYEDHGLIAPSRAGRNRVYGNRDKVRLKLTLRGKRLGLSLLEIRELIDMYDAARDERAQVERLQEVLRKRRSILEQQREDIEVVLGEIAAFEAQCGKFL-DAGKKAPKAR 399
++ TFTITELAREF +T RAIRFYED GL+ P+R GR+RVYG D+ RL+LTLRGKRLGLSL EI+ELIDMYD R+ Q++R Q VL +RR LEQQREDIE VL EI E QC L D A +AR
Sbjct: 3 SEQTFTITELAREFDVTPRAIRFYEDQGLLTPARCGRSRVYGKADRTRLRLTLRGKRLGLSLAEIKELIDMYDGVRNSVPQLQRFQRVLSERRGALEQQREDIEAVLAEIDMLERQCVALLGDNAAGAEQAR 134
BLAST of mRNA_P-wetherbeei_contig52737.1.1 vs. uniprot
Match: W0SC78_9PROT (Putative transcriptional regulator n=2 Tax=Betaproteobacteria TaxID=28216 RepID=W0SC78_9PROT) HSP 1 Score: 147 bits (372), Expect = 3.460e-43 Identity = 80/130 (61.54%), Postives = 99/130 (76.15%), Query Frame = 1
Query: 16 TFTITELAREFGLTTRAIRFYEDHGLIAPSRAGRNRVYGNRDKVRLKLTLRGKRLGLSLLEIRELIDMYDAARDERAQVERLQEVLRKRRSILEQQREDIEVVLGEIAAFEAQCGKFL--DAGKKAPKAR 399
T TITELAREFG+TTRAIR++E HGL++P+R G NR+Y RD+ RLKL LRGKRLGLSL EI++LIDMYD A DE +Q+ L +RR+ LEQQR+DI+ VL EIA FE QC + L D GK A ++R
Sbjct: 4 TQTITELAREFGVTTRAIRYWESHGLVSPAREGGNRIYSKRDQTRLKLALRGKRLGLSLAEIKDLIDMYDTAEDESSQLLSFLGALAQRRAALEQQRDDIQAVLKEIARFERQCREMLKSDEGKSASRSR 133 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52737.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig52737.1.1 >prot_P-wetherbeei_contig52737.1.1 ID=prot_P-wetherbeei_contig52737.1.1|Name=mRNA_P-wetherbeei_contig52737.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=134bp MADTTFTITELAREFGLTTRAIRFYEDHGLIAPSRAGRNRVYGNRDKVRLback to top mRNA from alignment at P-wetherbeei_contig52737:123..527+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig52737.1.1 ID=mRNA_P-wetherbeei_contig52737.1.1|Name=mRNA_P-wetherbeei_contig52737.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig52737:123..527+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig52737:123..527+ >mRNA_P-wetherbeei_contig52737.1.1 ID=mRNA_P-wetherbeei_contig52737.1.1|Name=mRNA_P-wetherbeei_contig52737.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig52737:123..527+ (Phaeothamnion wetherbeei SAG_119_79)back to top |