mRNA_P-wetherbeei_contig52737.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52737.1.1
Unique NamemRNA_P-wetherbeei_contig52737.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52737.1.1 vs. uniprot
Match: UPI001986CDD9 (MerR family DNA-binding transcriptional regulator n=1 Tax=Prolixibacteraceae bacterium TaxID=2053594 RepID=UPI001986CDD9)

HSP 1 Score: 211 bits (537), Expect = 2.650e-68
Identity = 112/128 (87.50%), Postives = 120/128 (93.75%), Query Frame = 1
Query:    4 MADTTFTITELAREFGLTTRAIRFYEDHGLIAPSRAGRNRVYGNRDKVRLKLTLRGKRLGLSLLEIRELIDMYDAARDERAQVERLQEVLRKRRSILEQQREDIEVVLGEIAAFEAQCGKFLDAGKKA 387
            MADTT+TITELAREFGLTTRAIRFYEDHGLIAP+RAGRNRVYG+RDKVRLKLTLRGKRLGLSL EIRELID+YDAA+DERAQVERLQ+VL KRR+ILEQQREDIE VLGEIAAFE QC +FLD   KA
Sbjct:    1 MADTTYTITELAREFGLTTRAIRFYEDHGLIAPTRAGRNRVYGSRDKVRLKLTLRGKRLGLSLSEIRELIDIYDAAKDERAQVERLQQVLHKRRTILEQQREDIEAVLGEIAAFEEQCRQFLDGKAKA 128          
BLAST of mRNA_P-wetherbeei_contig52737.1.1 vs. uniprot
Match: UPI00145995B1 (MerR family DNA-binding transcriptional regulator n=1 Tax=Azoarcus taiwanensis TaxID=666964 RepID=UPI00145995B1)

HSP 1 Score: 157 bits (396), Expect = 9.370e-47
Identity = 83/118 (70.34%), Postives = 94/118 (79.66%), Query Frame = 1
Query:   16 TFTITELAREFGLTTRAIRFYEDHGLIAPSRAGRNRVYGNRDKVRLKLTLRGKRLGLSLLEIRELIDMYDAARDERAQVERLQEVLRKRRSILEQQREDIEVVLGEIAAFEAQCGKFL 369
            T+TITELAREF +T RAIRFYEDHGL+ P+RAGR RVY   D+ RLKLTLRGKRLGLSL EIRELIDMYD  R+   Q+ERL +VL +RR+ LEQQRED+E VLGEIA  E QC   L
Sbjct:    6 TYTITELAREFNVTPRAIRFYEDHGLLTPARAGRARVYSKADRTRLKLTLRGKRLGLSLAEIRELIDMYDGVRNSAPQLERLLKVLAERRATLEQQREDLEAVLGEIAMLEVQCTNLL 123          
BLAST of mRNA_P-wetherbeei_contig52737.1.1 vs. uniprot
Match: A0A838LY92_9RHOO (MerR family DNA-binding transcriptional regulator n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A838LY92_9RHOO)

HSP 1 Score: 154 bits (389), Expect = 7.960e-46
Identity = 86/133 (64.66%), Postives = 100/133 (75.19%), Query Frame = 1
Query:    4 MADTTFTITELAREFGLTTRAIRFYEDHGLIAPSRAGRNRVYGNRDKVRLKLTLRGKRLGLSLLEIRELIDMYDAARDERAQVERLQEVLRKRRSILEQQREDIEVVLGEIAAFEAQCGKFLDAGKKAPKARK 402
            M + T+TITELAREF LT RAIR+YED GLI P RAG  RVY  RD+ RL+LTLRGKRLGLSL  IRELIDMYD A D+ +Q+ +L EVL +RR+ LEQQREDI  VL EI AFE QC   LDA +K  + R+
Sbjct:    1 MIEPTYTITELAREFELTPRAIRYYEDQGLITPQRAGVQRVYTKRDRTRLRLTLRGKRLGLSLAAIRELIDMYDTAPDQSSQLVKLLEVLARRRAKLEQQREDIAAVLEEIDAFEQQCRGLLDAAEKPARRRR 133          
BLAST of mRNA_P-wetherbeei_contig52737.1.1 vs. uniprot
Match: A0A5C7EM26_9PROT (MerR family DNA-binding transcriptional regulator n=1 Tax=Pelomicrobium methylotrophicum TaxID=2602750 RepID=A0A5C7EM26_9PROT)

HSP 1 Score: 154 bits (389), Expect = 9.890e-46
Identity = 84/132 (63.64%), Postives = 102/132 (77.27%), Query Frame = 1
Query:    1 DMADTTFTITELAREFGLTTRAIRFYEDHGLIAPSRAGRNRVYGNRDKVRLKLTLRGKRLGLSLLEIRELIDMYDAARDERAQVERLQEVLRKRRSILEQQREDIEVVLGEIAAFEAQCGKFLD--AGKKAP 390
            +M   T+TITELAREF +TTR IRFYED GL+ PSR GR RVY +RD+VRLKLTLRGKRLG SL EI+EL D+YD+AR E AQ+E+   +L KRR+ LEQQR+DI+ +L EIAAFE QC + L+  AG   P
Sbjct:    6 NMKKATYTITELAREFDVTTRTIRFYEDQGLLNPSRNGRRRVYSHRDRVRLKLTLRGKRLGFSLSEIKELFDLYDSARGEIAQLEQFLIILGKRRAALEQQRQDIDAMLAEIAAFEKQCRRMLEEKAGANRP 137          
BLAST of mRNA_P-wetherbeei_contig52737.1.1 vs. uniprot
Match: A0A5C1E5U4_9RHOO (Transcriptional regulator, MerR family n=1 Tax=Oryzomicrobium terrae TaxID=1735038 RepID=A0A5C1E5U4_9RHOO)

HSP 1 Score: 150 bits (380), Expect = 2.310e-44
Identity = 82/119 (68.91%), Postives = 95/119 (79.83%), Query Frame = 1
Query:   16 TFTITELAREFGLTTRAIRFYEDHGLIAPSRAGRNRVYGNRDKVRLKLTLRGKRLGLSLLEIRELIDMYDAAR-DERAQVERLQEVLRKRRSILEQQREDIEVVLGEIAAFEAQCGKFL 369
            T+TI+ELAREF +T R IR+YED GLIAPSR GRNRVY  RD++RLKL LRGKRLG+SL EIRE+IDMYD  R DE  Q+ R  +VL+KRR+ L QQREDIE VLGEI  FEAQC + L
Sbjct:    6 TYTISELAREFDITPRTIRYYEDQGLIAPSREGRNRVYSRRDRIRLKLALRGKRLGISLAEIREMIDMYDIGRGDEVHQLARFLDVLQKRRAALLQQREDIEAVLGEIDTFEAQCRQML 124          
BLAST of mRNA_P-wetherbeei_contig52737.1.1 vs. uniprot
Match: A0A7Y8M4K1_9RHOO (MerR family DNA-binding transcriptional regulator n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A7Y8M4K1_9RHOO)

HSP 1 Score: 150 bits (378), Expect = 3.520e-44
Identity = 82/123 (66.67%), Postives = 98/123 (79.67%), Query Frame = 1
Query:   13 TTFTITELAREFGLTTRAIRFYEDHGLIAPSRAGRNRVYGNRDKVRLKLTLRGKRLGLSLLEIRELIDMYDAARDERAQVERLQEVLRKRRSILEQQREDIEVVLGEIAAFEAQCGKFLDAGK 381
            T+++I +LAREFG+T R IR+YED GL+ P+RAG  R+Y  RD+ RLKLTLRGKRLGLSL EIRELIDMYD A  E +Q+ RL EVL ++R+ L QQREDIE VLGE+ AFEAQC   LDAGK
Sbjct:    6 TSYSIADLAREFGVTPRTIRYYEDQGLLNPARAGGQRIYSKRDRTRLKLTLRGKRLGLSLAEIRELIDMYDTA-PETSQLARLIEVLGRQRAKLIQQREDIEAVLGELDAFEAQCRALLDAGK 127          
BLAST of mRNA_P-wetherbeei_contig52737.1.1 vs. uniprot
Match: A0A2N2TKS3_9PROT (MerR family transcriptional regulator n=1 Tax=Betaproteobacteria bacterium HGW-Betaproteobacteria-14 TaxID=2013705 RepID=A0A2N2TKS3_9PROT)

HSP 1 Score: 149 bits (376), Expect = 7.780e-44
Identity = 80/118 (67.80%), Postives = 92/118 (77.97%), Query Frame = 1
Query:   16 TFTITELAREFGLTTRAIRFYEDHGLIAPSRAGRNRVYGNRDKVRLKLTLRGKRLGLSLLEIRELIDMYDAARDERAQVERLQEVLRKRRSILEQQREDIEVVLGEIAAFEAQCGKFL 369
            TFTITELAREF LT RAIR+YED GLIAP RAG+NRVY  RD+ RLKLTLRG+RLGLSL EIRELID+YD  RD+R Q+ +   VL  RR+ LEQQREDIE VL EI + E +  + L
Sbjct:    6 TFTITELAREFDLTPRAIRYYEDQGLIAPQRAGQNRVYSKRDRTRLKLTLRGRRLGLSLAEIRELIDLYDVGRDQRTQLSKFLAVLAARRAALEQQREDIEAVLTEIVSLEQRAHELL 123          
BLAST of mRNA_P-wetherbeei_contig52737.1.1 vs. uniprot
Match: A0A5H2YF60_9RHOO (HTH merR-type domain-containing protein n=3 Tax=Betaproteobacteria TaxID=28216 RepID=A0A5H2YF60_9RHOO)

HSP 1 Score: 150 bits (379), Expect = 1.040e-43
Identity = 83/130 (63.85%), Postives = 97/130 (74.62%), Query Frame = 1
Query:    7 ADTTFTITELAREFGLTTRAIRFYEDHGLIAPSRAGRNRVYGNRDKVRLKLTLRGKRLGLSLLEIRELIDMYDAARDERAQVERLQEVLRKRRSILEQQREDIEVVLGEIAAFEAQCGKFLDAGKKAPKA 396
            A  TFTI++LAREF +T R IRF+ED GL+AP+R GRNRVY  RD+ RLKL LRGKRLGLSL EIR+LIDMYD ARDE  Q+ RL +VL +RR+ LEQQREDIE VL EI   EA C + L   +   KA
Sbjct:   37 ATPTFTISDLAREFNITPRTIRFWEDQGLLAPNREGRNRVYTKRDRTRLKLALRGKRLGLSLAEIRDLIDMYDVARDETDQLTRLLDVLSERRAALEQQREDIEAVLAEIETIEAVCREHLVEAEALEKA 166          
BLAST of mRNA_P-wetherbeei_contig52737.1.1 vs. uniprot
Match: A0A2T4ICX1_9RHOO (MerR family transcriptional regulator n=1 Tax=Thauera lacus TaxID=2136175 RepID=A0A2T4ICX1_9RHOO)

HSP 1 Score: 148 bits (374), Expect = 2.070e-43
Identity = 83/132 (62.88%), Postives = 97/132 (73.48%), Query Frame = 1
Query:    7 ADTTFTITELAREFGLTTRAIRFYEDHGLIAPSRAGRNRVYGNRDKVRLKLTLRGKRLGLSLLEIRELIDMYDAARDERAQVERLQEVLRKRRSILEQQREDIEVVLGEIAAFEAQCGKFL-DAGKKAPKAR 399
            ++ TFTITELAREF +T RAIRFYED GL+ P+R GR+RVYG  D+ RL+LTLRGKRLGLSL EI+ELIDMYD  R+   Q++R Q VL +RR  LEQQREDIE VL EI   E QC   L D    A +AR
Sbjct:    3 SEQTFTITELAREFDVTPRAIRFYEDQGLLTPARCGRSRVYGKADRTRLRLTLRGKRLGLSLAEIKELIDMYDGVRNSVPQLQRFQRVLSERRGALEQQREDIEAVLAEIDMLERQCVALLGDNAAGAEQAR 134          
BLAST of mRNA_P-wetherbeei_contig52737.1.1 vs. uniprot
Match: W0SC78_9PROT (Putative transcriptional regulator n=2 Tax=Betaproteobacteria TaxID=28216 RepID=W0SC78_9PROT)

HSP 1 Score: 147 bits (372), Expect = 3.460e-43
Identity = 80/130 (61.54%), Postives = 99/130 (76.15%), Query Frame = 1
Query:   16 TFTITELAREFGLTTRAIRFYEDHGLIAPSRAGRNRVYGNRDKVRLKLTLRGKRLGLSLLEIRELIDMYDAARDERAQVERLQEVLRKRRSILEQQREDIEVVLGEIAAFEAQCGKFL--DAGKKAPKAR 399
            T TITELAREFG+TTRAIR++E HGL++P+R G NR+Y  RD+ RLKL LRGKRLGLSL EI++LIDMYD A DE +Q+      L +RR+ LEQQR+DI+ VL EIA FE QC + L  D GK A ++R
Sbjct:    4 TQTITELAREFGVTTRAIRYWESHGLVSPAREGGNRIYSKRDQTRLKLALRGKRLGLSLAEIKDLIDMYDTAEDESSQLLSFLGALAQRRAALEQQRDDIQAVLKEIARFERQCREMLKSDEGKSASRSR 133          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52737.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001986CDD92.650e-6887.50MerR family DNA-binding transcriptional regulator ... [more]
UPI00145995B19.370e-4770.34MerR family DNA-binding transcriptional regulator ... [more]
A0A838LY92_9RHOO7.960e-4664.66MerR family DNA-binding transcriptional regulator ... [more]
A0A5C7EM26_9PROT9.890e-4663.64MerR family DNA-binding transcriptional regulator ... [more]
A0A5C1E5U4_9RHOO2.310e-4468.91Transcriptional regulator, MerR family n=1 Tax=Ory... [more]
A0A7Y8M4K1_9RHOO3.520e-4466.67MerR family DNA-binding transcriptional regulator ... [more]
A0A2N2TKS3_9PROT7.780e-4467.80MerR family transcriptional regulator n=1 Tax=Beta... [more]
A0A5H2YF60_9RHOO1.040e-4363.85HTH merR-type domain-containing protein n=3 Tax=Be... [more]
A0A2T4ICX1_9RHOO2.070e-4362.88MerR family transcriptional regulator n=1 Tax=Thau... [more]
W0SC78_9PROT3.460e-4361.54Putative transcriptional regulator n=2 Tax=Betapro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52737contigP-wetherbeei_contig52737:123..527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog640081.Dsui_0973
PFAMsMerR_1
Model size405
Max annot lvl206389|Rhodocyclales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.13e-44
EggNOG OGsCOG0789@1|root,COG0789@2|Bacteria,1RITY@1224|Proteobacteria,2VSPA@28216|Betaproteobacteria,2KWYU@206389|Rhodocyclales
Descriptiontranscriptional
Cds size402
COG categoryK
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186790.345785-UTR-P-wetherbeei_contig52737:122..1251683186790.345785-UTR-P-wetherbeei_contig52737:122..125Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig52737 123..125 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186790.3608797-CDS-P-wetherbeei_contig52737:125..5271683186790.3608797-CDS-P-wetherbeei_contig52737:125..527Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52737 126..527 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52737.1.1prot_P-wetherbeei_contig52737.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52737 126..527 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52737.1.1

>prot_P-wetherbeei_contig52737.1.1 ID=prot_P-wetherbeei_contig52737.1.1|Name=mRNA_P-wetherbeei_contig52737.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=134bp
MADTTFTITELAREFGLTTRAIRFYEDHGLIAPSRAGRNRVYGNRDKVRL
KLTLRGKRLGLSLLEIRELIDMYDAARDERAQVERLQEVLRKRRSILEQQ
REDIEVVLGEIAAFEAQCGKFLDAGKKAPKARK*
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mRNA from alignment at P-wetherbeei_contig52737:123..527+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52737.1.1 ID=mRNA_P-wetherbeei_contig52737.1.1|Name=mRNA_P-wetherbeei_contig52737.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig52737:123..527+ (Phaeothamnion wetherbeei SAG_119_79)
GACATGGCCGATACTACATTCACCATTACAGAACTCGCGCGCGAATTCGG TCTGACCACCCGCGCGATCCGATTCTATGAAGACCACGGGCTGATTGCGC CGTCGCGCGCTGGCCGCAACCGGGTCTATGGCAATCGCGACAAGGTGAGA TTGAAACTGACCTTGCGCGGAAAACGCCTGGGGCTGTCGCTGCTCGAAAT CCGCGAACTCATCGACATGTACGATGCGGCCAGGGACGAGCGCGCCCAGG TCGAGCGCCTGCAGGAAGTGCTGCGCAAACGGCGCAGCATTCTGGAGCAG CAGCGTGAGGACATTGAAGTGGTGCTGGGTGAAATTGCCGCATTTGAAGC GCAATGCGGCAAATTTCTCGATGCTGGAAAAAAAGCACCAAAAGCACGCA AGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52737:123..527+

>mRNA_P-wetherbeei_contig52737.1.1 ID=mRNA_P-wetherbeei_contig52737.1.1|Name=mRNA_P-wetherbeei_contig52737.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig52737:123..527+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGATACTACATTCACCATTACAGAACTCGCGCGCGAATTCGGTCT
GACCACCCGCGCGATCCGATTCTATGAAGACCACGGGCTGATTGCGCCGT
CGCGCGCTGGCCGCAACCGGGTCTATGGCAATCGCGACAAGGTGAGATTG
AAACTGACCTTGCGCGGAAAACGCCTGGGGCTGTCGCTGCTCGAAATCCG
CGAACTCATCGACATGTACGATGCGGCCAGGGACGAGCGCGCCCAGGTCG
AGCGCCTGCAGGAAGTGCTGCGCAAACGGCGCAGCATTCTGGAGCAGCAG
CGTGAGGACATTGAAGTGGTGCTGGGTGAAATTGCCGCATTTGAAGCGCA
ATGCGGCAAATTTCTCGATGCTGGAAAAAAAGCACCAAAAGCACGCAAGT
AA
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