mRNA_P-wetherbeei_contig52727.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52727.1.1
Unique NamemRNA_P-wetherbeei_contig52727.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52727.1.1 vs. uniprot
Match: UPI0019BDAEC8 (Tyrosine-type recombinase/integrase n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=UPI0019BDAEC8)

HSP 1 Score: 259 bits (662), Expect = 3.190e-85
Identity = 137/181 (75.69%), Postives = 157/181 (86.74%), Query Frame = 1
Query:    1 EQFLKYLQYEKRVSAHTTLAYKTDLAQFSKFLKDTYDDHPIESVTYGMVRSWIITLVDSKIEATSVNRKIASLKTFYKFLMRQQIIEKNPMQKIRVLKTQKRLPSFVNENEMVKVLDNKEDIKNIVVKWNDSLEDWRNRLILELFYATGIRLSELIGLKETQINLHDRTIKVLGKRNKERV 543
            E FLKYLQ+EKRVSAHT+LAYK DL QF++FLK+T+DD  IES  YGMVRSWII+LVDS+I+ TSVNRKIASLKTFYKFLMRQQII K PMQKIR+LKTQKRLPSFVNE EM+ +LD+KE        +ND+ EDWR+RLILELFYATGIRLSELI L+E +IN+ DRTIKVLGKRNKER+
Sbjct:    3 ELFLKYLQFEKRVSAHTSLAYKNDLDQFAQFLKETFDDALIESANYGMVRSWIISLVDSEIKPTSVNRKIASLKTFYKFLMRQQIIAKTPMQKIRILKTQKRLPSFVNEAEMITMLDSKE--------FNDTFEDWRDRLILELFYATGIRLSELINLQENRINIPDRTIKVLGKRNKERI 175          
BLAST of mRNA_P-wetherbeei_contig52727.1.1 vs. uniprot
Match: A0A3D3I8R2_9BACT (Integrase (Fragment) n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=A0A3D3I8R2_9BACT)

HSP 1 Score: 217 bits (552), Expect = 3.350e-69
Identity = 111/181 (61.33%), Postives = 143/181 (79.01%), Query Frame = 1
Query:    1 EQFLKYLQYEKRVSAHTTLAYKTDLAQFSKFLKDTYDDHPIESVTYGMVRSWIITLVDSKIEATSVNRKIASLKTFYKFLMRQQIIEKNPMQKIRVLKTQKRLPSFVNENEMVKVLDNKEDIKNIVVKWNDSLEDWRNRLILELFYATGIRLSELIGLKETQINLHDRTIKVLGKRNKERV 543
            + F KYLQYEKR S  T L+Y+TDL Q+SKFL+ TY++   E  TYG +RSWI++LV+ K++  S+NRKIA L++FYKF ++Q++I KNPMQKI+VLKT K+LP FV+E +M K+LD+        V++ + LE  RNRLI+ELFY TGIRLSELIGLKE+ INLH+RTIKVLGKRNKERV
Sbjct:    3 DSFFKYLQYEKRYSPKTILSYQTDLHQYSKFLEQTYEEKKPELATYGAIRSWIVSLVEIKLDPRSINRKIACLRSFYKFCLKQEVITKNPMQKIKVLKTAKKLPHFVHEEDMTKLLDH--------VQFENDLEGCRNRLIIELFYGTGIRLSELIGLKESNINLHERTIKVLGKRNKERV 175          
BLAST of mRNA_P-wetherbeei_contig52727.1.1 vs. uniprot
Match: A0A3D4INB8_9BACT (Tyrosine recombinase XerC n=2 Tax=Cytophagales bacterium TaxID=2053541 RepID=A0A3D4INB8_9BACT)

HSP 1 Score: 215 bits (548), Expect = 4.670e-67
Identity = 110/181 (60.77%), Postives = 143/181 (79.01%), Query Frame = 1
Query:    1 EQFLKYLQYEKRVSAHTTLAYKTDLAQFSKFLKDTYDDHPIESVTYGMVRSWIITLVDSKIEATSVNRKIASLKTFYKFLMRQQIIEKNPMQKIRVLKTQKRLPSFVNENEMVKVLDNKEDIKNIVVKWNDSLEDWRNRLILELFYATGIRLSELIGLKETQINLHDRTIKVLGKRNKERV 543
            + F KYLQYEKR S  T L+Y+TDL Q+SKFL+ TY++   E  TYG +RSWI++LV+ K++  S+NRKIA L++FYKF ++Q++I KNPMQKI+VL+T K+LP FV+E +M K+LD+        V++ + LE  RNRLI+ELFY TGIRLSELIGLKE+ INLH+RTIKVLGKRNKERV
Sbjct:    3 DSFFKYLQYEKRYSPKTILSYQTDLHQYSKFLEQTYEEKKPELATYGAIRSWIVSLVEIKLDPRSINRKIACLRSFYKFCLKQEVITKNPMQKIKVLETAKKLPHFVHEEDMTKLLDH--------VQFENDLEGCRNRLIIELFYGTGIRLSELIGLKESNINLHERTIKVLGKRNKERV 175          
BLAST of mRNA_P-wetherbeei_contig52727.1.1 vs. uniprot
Match: A0A7L9BD40_9BACT (Tyrosine recombinase XerC n=1 Tax=Flammeovirgaceae bacterium TaxID=2026740 RepID=A0A7L9BD40_9BACT)

HSP 1 Score: 212 bits (540), Expect = 7.570e-66
Identity = 111/181 (61.33%), Postives = 141/181 (77.90%), Query Frame = 1
Query:    1 EQFLKYLQYEKRVSAHTTLAYKTDLAQFSKFLKDTYDDHPIESVTYGMVRSWIITLVDSKIEATSVNRKIASLKTFYKFLMRQQIIEKNPMQKIRVLKTQKRLPSFVNENEMVKVLDNKEDIKNIVVKWNDSLEDWRNRLILELFYATGIRLSELIGLKETQINLHDRTIKVLGKRNKERV 543
            E FL YLQ+EKRVS HT  AY+TDLAQF++F+  T+ +   E   YG++RSWII +V+   +ATSVNRKIASL+TFYKFL+R+Q+I KNPM KIRVLKT+KRLPSF+ E E+  +LD         V++ DS   WR++LILELFYATG+RLSELI LKE+Q++L + T+KVLGKRNKERV
Sbjct:    3 ESFLNYLQFEKRVSKHTLTAYQTDLAQFTEFINLTFPEFKPEHADYGVIRSWIIQVVEQGAKATSVNRKIASLRTFYKFLLREQVITKNPMLKIRVLKTEKRLPSFIQEKEIASLLD--------TVQFEDSHAGWRDKLILELFYATGMRLSELITLKESQVDLRNGTVKVLGKRNKERV 175          
BLAST of mRNA_P-wetherbeei_contig52727.1.1 vs. uniprot
Match: A0A1M5XFL0_9BACT (Tyrosine recombinase XerC n=2 Tax=Chryseolinea TaxID=1433993 RepID=A0A1M5XFL0_9BACT)

HSP 1 Score: 210 bits (534), Expect = 6.110e-65
Identity = 111/181 (61.33%), Postives = 143/181 (79.01%), Query Frame = 1
Query:    1 EQFLKYLQYEKRVSAHTTLAYKTDLAQFSKFLKDTYDDHPIESVTYGMVRSWIITLVDSKIEATSVNRKIASLKTFYKFLMRQQIIEKNPMQKIRVLKTQKRLPSFVNENEMVKVLDNKEDIKNIVVKWNDSLEDWRNRLILELFYATGIRLSELIGLKETQINLHDRTIKVLGKRNKERV 543
            E FLKY+Q+EKR+SAHT LAYKTDL QF+ FL +T+ D+  E+  +G+VR+WII LV+S ++A SVNRKIA L++FYKFL+RQ++I K+P+QKI  LKT+KRLPSFV E +M  +LD+ E        +   L+  R++LILELFYATGIRLSEL+ LKE +I+LH RTIKVLGKRNKERV
Sbjct:    3 ESFLKYVQFEKRLSAHTVLAYKTDLDQFTVFLANTFPDYTPETADHGVVRTWIIQLVESNLDAASVNRKIACLRSFYKFLLRQEVISKDPLQKITQLKTKKRLPSFVKEGDMAHLLDDTE--------FGPGLDGVRDKLILELFYATGIRLSELLTLKENEIDLHGRTIKVLGKRNKERV 175          
BLAST of mRNA_P-wetherbeei_contig52727.1.1 vs. uniprot
Match: A0A7Y4VJA8_9BACT (Tyrosine recombinase XerC n=1 Tax=Cyclobacteriaceae bacterium TaxID=2099675 RepID=A0A7Y4VJA8_9BACT)

HSP 1 Score: 207 bits (526), Expect = 9.890e-64
Identity = 109/181 (60.22%), Postives = 139/181 (76.80%), Query Frame = 1
Query:    1 EQFLKYLQYEKRVSAHTTLAYKTDLAQFSKFLKDTYDDHPIESVTYGMVRSWIITLVDSKIEATSVNRKIASLKTFYKFLMRQQIIEKNPMQKIRVLKTQKRLPSFVNENEMVKVLDNKEDIKNIVVKWNDSLEDWRNRLILELFYATGIRLSELIGLKETQINLHDRTIKVLGKRNKERV 543
            E FLKYLQ+EKR S  T ++Y+TDL QF +FL + YD    +   YG+VRSWI+ LV++KI ATSVNRKIA L+++YKFLMRQ +IEK+PMQKI+VLK+ K+LP FVNE++ VK+LDN        V +    E  R++LILELFY TG+RLSELI LKE +IN+ DRT++VLGKRNKERV
Sbjct:    3 ESFLKYLQFEKRYSPQTVISYETDLTQFERFLTEQYDGIKAQEANYGLVRSWIVQLVENKIGATSVNRKIACLRSYYKFLMRQGLIEKDPMQKIKVLKSPKKLPHFVNESDTVKLLDN--------VVFTPDHEGQRDQLILELFYGTGMRLSELINLKENRINISDRTLRVLGKRNKERV 175          
BLAST of mRNA_P-wetherbeei_contig52727.1.1 vs. uniprot
Match: UPI00191F20FE (tyrosine-type recombinase/integrase n=1 Tax=Chryseolinea sp. Jin1 TaxID=2801331 RepID=UPI00191F20FE)

HSP 1 Score: 205 bits (521), Expect = 5.630e-63
Identity = 116/181 (64.09%), Postives = 137/181 (75.69%), Query Frame = 1
Query:    1 EQFLKYLQYEKRVSAHTTLAYKTDLAQFSKFLKDTYDDHPIESVTYGMVRSWIITLVDSKIEATSVNRKIASLKTFYKFLMRQQIIEKNPMQKIRVLKTQKRLPSFVNENEMVKVLDNKEDIKNIVVKWNDSLEDWRNRLILELFYATGIRLSELIGLKETQINLHDRTIKVLGKRNKERV 543
            E FLKYLQ+EKRVSAHT LAYKTDL QFS FL DT+     E+ T+G VRSWII LV+S IE  SVNRK A L++FYKFL RQ++I K+PM KI  LKT+K+LPSFV E +MV +LDN        + + ++L   R+RLILEL YATGIR SELIGLKET I+L  +TIKVLGKRNKERV
Sbjct:    3 ESFLKYLQFEKRVSAHTVLAYKTDLGQFSLFLTDTFPGTFPETATHGEVRSWIIQLVESGIEPRSVNRKTACLRSFYKFLQRQELIGKDPMLKIMPLKTKKQLPSFVKEADMVHLLDN--------IVFENTLNGHRDRLILELLYATGIRRSELIGLKETHIDLRGQTIKVLGKRNKERV 175          
BLAST of mRNA_P-wetherbeei_contig52727.1.1 vs. uniprot
Match: A0A6N4EQ74_9RHOO (Tyrosine recombinase XerC n=1 Tax=Azospira oryzae TaxID=146939 RepID=A0A6N4EQ74_9RHOO)

HSP 1 Score: 200 bits (509), Expect = 3.770e-61
Identity = 100/181 (55.25%), Postives = 141/181 (77.90%), Query Frame = 1
Query:    1 EQFLKYLQYEKRVSAHTTLAYKTDLAQFSKFLKDTYDDHPIESVTYGMVRSWIITLVDSKIEATSVNRKIASLKTFYKFLMRQQIIEKNPMQKIRVLKTQKRLPSFVNENEMVKVLDNKEDIKNIVVKWNDSLEDWRNRLILELFYATGIRLSELIGLKETQINLHDRTIKVLGKRNKERV 543
            E FL+YLQ+EKR S  T ++YK DL QFS+F++ +Y D  +E++ YG+VRSWI++LVD++++  SVNRKIA L++FYK+L+R+++I K+PM KI+VLKT+K+LP F+ EN++V +LD+ +D+ +            R RLILEL Y TG+RLSELI LKE+ IN HD+T+KVLGKRNKERV
Sbjct:    3 EAFLRYLQFEKRYSLKTIVSYKNDLDQFSEFIRSSYPDFTVETIEYGIVRSWIVSLVDAELDPVSVNRKIACLRSFYKYLLREEVITKDPMTKIKVLKTKKKLPHFIQENDIVNLLDHNDDLSH-------DHHGLRARLILELLYGTGMRLSELITLKESAINFHDQTLKVLGKRNKERV 176          
BLAST of mRNA_P-wetherbeei_contig52727.1.1 vs. uniprot
Match: A0A1T5LHJ0_9BACT (Tyrosine recombinase XerC n=1 Tax=Ohtaekwangia koreensis TaxID=688867 RepID=A0A1T5LHJ0_9BACT)

HSP 1 Score: 200 bits (508), Expect = 5.180e-61
Identity = 106/181 (58.56%), Postives = 136/181 (75.14%), Query Frame = 1
Query:    1 EQFLKYLQYEKRVSAHTTLAYKTDLAQFSKFLKDTYDDHPIESVTYGMVRSWIITLVDSKIEATSVNRKIASLKTFYKFLMRQQIIEKNPMQKIRVLKTQKRLPSFVNENEMVKVLDNKEDIKNIVVKWNDSLEDWRNRLILELFYATGIRLSELIGLKETQINLHDRTIKVLGKRNKERV 543
            + FLKYLQYEKRVS++T LAY+TDL QF  FL  T+ D  I++  Y ++RSWII LV+  I ++S+NRKIA L+TFYKFL R+++I K+PM KI++LK  K+LPSFV E++MVKVLDN+         +  +    R +LILELFY TGIRLSEL+ LKE  +NL +RTIKVLGKRNKERV
Sbjct:    3 DSFLKYLQYEKRVSSNTVLAYETDLKQFGTFLTITFPDTKIDAADYQVIRSWIIQLVEQNIGSSSINRKIACLRTFYKFLQREEVIAKDPMLKIKILKASKKLPSFVKESDMVKVLDNQ--------SFEHTFAGHREKLILELFYGTGIRLSELLTLKENDVNLGNRTIKVLGKRNKERV 175          
BLAST of mRNA_P-wetherbeei_contig52727.1.1 vs. uniprot
Match: A0A401U7M4_9BACT (Tyrosine recombinase XerC n=1 Tax=Chryseotalea sanaruensis TaxID=2482724 RepID=A0A401U7M4_9BACT)

HSP 1 Score: 197 bits (500), Expect = 8.120e-60
Identity = 105/179 (58.66%), Postives = 133/179 (74.30%), Query Frame = 1
Query:    7 FLKYLQYEKRVSAHTTLAYKTDLAQFSKFLKDTYDDHPIESVTYGMVRSWIITLVDSKIEATSVNRKIASLKTFYKFLMRQQIIEKNPMQKIRVLKTQKRLPSFVNENEMVKVLDNKEDIKNIVVKWNDSLEDWRNRLILELFYATGIRLSELIGLKETQINLHDRTIKVLGKRNKERV 543
            FL+YL++EKR+S HT +AYK DL QF  FLK+TY+   + S  YGMVRSWI  LVD K E  SVNRKIA+L+ F+KFLMRQ  + K+P+ KI VLKTQKRLPSFV E EM ++LD+        V + DSLE  R+RL++ELFY +G+RL+EL+ L +  IN  +RT+KVLGKRNKERV
Sbjct:    5 FLRYLEFEKRLSKHTLIAYKGDLLQFKSFLKETYETEDLTSANYGMVRSWIAQLVDEKNEPRSVNRKIATLRAFFKFLMRQGSLSKDPLLKIMVLKTQKRLPSFVREEEMNQMLDH--------VVFEDSLEGHRDRLVMELFYGSGMRLAELLQLGDKSINFKNRTLKVLGKRNKERV 175          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52727.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019BDAEC83.190e-8575.69Tyrosine-type recombinase/integrase n=1 Tax=Chitin... [more]
A0A3D3I8R2_9BACT3.350e-6961.33Integrase (Fragment) n=1 Tax=Cytophagales bacteriu... [more]
A0A3D4INB8_9BACT4.670e-6760.77Tyrosine recombinase XerC n=2 Tax=Cytophagales bac... [more]
A0A7L9BD40_9BACT7.570e-6661.33Tyrosine recombinase XerC n=1 Tax=Flammeovirgaceae... [more]
A0A1M5XFL0_9BACT6.110e-6561.33Tyrosine recombinase XerC n=2 Tax=Chryseolinea Tax... [more]
A0A7Y4VJA8_9BACT9.890e-6460.22Tyrosine recombinase XerC n=1 Tax=Cyclobacteriacea... [more]
UPI00191F20FE5.630e-6364.09tyrosine-type recombinase/integrase n=1 Tax=Chryse... [more]
A0A6N4EQ74_9RHOO3.770e-6155.25Tyrosine recombinase XerC n=1 Tax=Azospira oryzae ... [more]
A0A1T5LHJ0_9BACT5.180e-6158.56Tyrosine recombinase XerC n=1 Tax=Ohtaekwangia kor... [more]
A0A401U7M4_9BACT8.120e-6058.66Tyrosine recombinase XerC n=1 Tax=Chryseotalea san... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52727contigP-wetherbeei_contig52727:1..543 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1121373.KB903626_gene3293
Preferred namexerC
PFAMsPhage_int_SAM_1,Phage_integrase
Model size543
Max annot lvl976|Bacteroidetes
KEGG koko:K03733
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.47e-53
EggNOG OGsCOG4974@1|root,COG4974@2|Bacteria,4NGQW@976|Bacteroidetes,47JJY@768503|Cytophagia
DescriptionBelongs to the 'phage' integrase family
Cds size543
COG categoryL
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186790.2164607-CDS-P-wetherbeei_contig52727:0..5431683186790.2164607-CDS-P-wetherbeei_contig52727:0..543Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52727 1..543 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52727.1.1prot_P-wetherbeei_contig52727.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52727 1..543 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52727.1.1

>prot_P-wetherbeei_contig52727.1.1 ID=prot_P-wetherbeei_contig52727.1.1|Name=mRNA_P-wetherbeei_contig52727.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=181bp
EQFLKYLQYEKRVSAHTTLAYKTDLAQFSKFLKDTYDDHPIESVTYGMVR
SWIITLVDSKIEATSVNRKIASLKTFYKFLMRQQIIEKNPMQKIRVLKTQ
KRLPSFVNENEMVKVLDNKEDIKNIVVKWNDSLEDWRNRLILELFYATGI
RLSELIGLKETQINLHDRTIKVLGKRNKERV
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mRNA from alignment at P-wetherbeei_contig52727:1..543+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52727.1.1 ID=mRNA_P-wetherbeei_contig52727.1.1|Name=mRNA_P-wetherbeei_contig52727.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig52727:1..543+ (Phaeothamnion wetherbeei SAG_119_79)
GAGCAATTCCTGAAATATCTCCAATATGAAAAACGCGTAAGTGCTCACAC GACACTCGCGTATAAAACAGACCTCGCCCAGTTCTCGAAATTTCTAAAAG ATACCTACGATGATCATCCGATTGAATCGGTGACGTATGGCATGGTTCGT TCGTGGATCATTACATTGGTTGACTCAAAGATCGAGGCAACATCCGTTAA CCGGAAAATTGCCAGTCTCAAAACGTTCTATAAGTTTTTAATGCGGCAGC AGATCATTGAGAAAAATCCAATGCAAAAAATTCGTGTGCTGAAAACACAA AAGCGATTACCATCCTTCGTGAACGAGAACGAAATGGTGAAGGTGCTCGA TAATAAAGAAGACATAAAAAATATTGTTGTAAAGTGGAATGATTCACTTG AAGATTGGAGGAATCGCCTAATACTAGAGCTGTTCTATGCGACCGGCATT CGTCTCTCCGAATTGATTGGGTTGAAAGAAACTCAGATCAACCTCCACGA TCGTACCATTAAAGTTTTAGGTAAAAGAAATAAGGAAAGGGTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52727:1..543+

>mRNA_P-wetherbeei_contig52727.1.1 ID=mRNA_P-wetherbeei_contig52727.1.1|Name=mRNA_P-wetherbeei_contig52727.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig52727:1..543+ (Phaeothamnion wetherbeei SAG_119_79)
GAGCAATTCCTGAAATATCTCCAATATGAAAAACGCGTAAGTGCTCACAC
GACACTCGCGTATAAAACAGACCTCGCCCAGTTCTCGAAATTTCTAAAAG
ATACCTACGATGATCATCCGATTGAATCGGTGACGTATGGCATGGTTCGT
TCGTGGATCATTACATTGGTTGACTCAAAGATCGAGGCAACATCCGTTAA
CCGGAAAATTGCCAGTCTCAAAACGTTCTATAAGTTTTTAATGCGGCAGC
AGATCATTGAGAAAAATCCAATGCAAAAAATTCGTGTGCTGAAAACACAA
AAGCGATTACCATCCTTCGTGAACGAGAACGAAATGGTGAAGGTGCTCGA
TAATAAAGAAGACATAAAAAATATTGTTGTAAAGTGGAATGATTCACTTG
AAGATTGGAGGAATCGCCTAATACTAGAGCTGTTCTATGCGACCGGCATT
CGTCTCTCCGAATTGATTGGGTTGAAAGAAACTCAGATCAACCTCCACGA
TCGTACCATTAAAGTTTTAGGTAAAAGAAATAAGGAAAGGGTT
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