mRNA_P-wetherbeei_contig5258.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5258.1.1
Unique NamemRNA_P-wetherbeei_contig5258.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5258.1.1 vs. uniprot
Match: A0A7X9KKB8_9ACTN (TetR/AcrR family transcriptional regulator n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X9KKB8_9ACTN)

HSP 1 Score: 212 bits (540), Expect = 5.500e-67
Identity = 112/188 (59.57%), Postives = 136/188 (72.34%), Query Frame = 1
Query:    1 LDSVGTTLLQAASDLLAAEGPSALTVRRIAADAGVSTMNVYSRFGGKDGVIEHLFVAGFTELGAGMDAADETNDPVADLRRCGIAYRTFALANATTYSIMFDRPVPDFVPSDAALEVAGATLGKLAARIQRVMDAGMFAAADPLQTAAVVWATCHGVVSLELRHVGPAPLVDWAVVYEQAMDAITRGL 564
            LD VG+ LL+AA  LLA EGPSALTVRRIAA+AG+STMNVYSRFGGKDGV+E LF+ GF  L  GM     T+DP+ADLRRCG AYR FA  ++T YS+MF+R V D+ P+ AA   A  TL  LAAR+QR MDAG+    D    AA+VW+TCHGV+SL+L+H G  P VDW  V+  A +A+  GL
Sbjct:    9 LDDVGSALLRAADGLLATEGPSALTVRRIAAEAGMSTMNVYSRFGGKDGVVEQLFLHGFELLAGGMGEVGATDDPIADLRRCGQAYRRFASEHSTLYSVMFERVVADYEPTPAAKAAALGTLELLAARLQRAMDAGLVRRMDATHAAAIVWSTCHGVISLQLKHDGITP-VDWQQVFADATEAVVSGL 195          
BLAST of mRNA_P-wetherbeei_contig5258.1.1 vs. uniprot
Match: A0A7K1B1M7_9ACTN (TetR family transcriptional regulator n=2 Tax=root TaxID=1 RepID=A0A7K1B1M7_9ACTN)

HSP 1 Score: 202 bits (513), Expect = 1.480e-62
Identity = 112/188 (59.57%), Postives = 136/188 (72.34%), Query Frame = 1
Query:    1 LDSVGTTLLQAASDLLAAEGPSALTVRRIAADAGVSTMNVYSRFGGKDGVIEHLFVAGFTELGAGMDAADETNDPVADLRRCGIAYRTFALANATTYSIMFDRPVPDFVPSDAALEVAGATLGKLAARIQRVMDAGMFAAADPLQTAAVVWATCHGVVSLELRHVGPAPLVDWAVVYEQAMDAITRGL 564
            +D V  TLL+AAS++LAAEGP+ALTVRRIA  AGVSTMNVYSRFGGK+GV+EHL++ GFT L   M    ET+DP+ DL R G AYR FAL + T Y++MFD  +P   PS  A+E A  TL  LA R+ R MDAG+ A ADP+ TAA VWA CHGVVSLE + VGP P +DWA VY++   A+  GL
Sbjct:   25 IDHVRVTLLRAASEVLAAEGPAALTVRRIARAAGVSTMNVYSRFGGKEGVVEHLYIEGFTRLRDAMTDDAETDDPLLDLVRSGQAYRRFALTHPTYYAVMFDGVIP-LQPSPTAVEHASGTLRLLADRLHRAMDAGLLAPADPMTTAAGVWAACHGVVSLERKAVGP-PGLDWAEVYDRTCAALLAGL 210          
BLAST of mRNA_P-wetherbeei_contig5258.1.1 vs. uniprot
Match: A0A6N2DP89_9ACTN (TetR/AcrR family transcriptional regulator n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A6N2DP89_9ACTN)

HSP 1 Score: 175 bits (444), Expect = 1.710e-52
Identity = 93/181 (51.38%), Postives = 117/181 (64.64%), Query Frame = 1
Query:   22 LLQAASDLLAAEGPSALTVRRIAADAGVSTMNVYSRFGGKDGVIEHLFVAGFTELGAGMDAADETNDPVADLRRCGIAYRTFALANATTYSIMFDRPVPDFVPSDAALEVAGATLGKLAARIQRVMDAGMFAAADPLQTAAVVWATCHGVVSLELRHVGPAPLVDWAVVYEQAMDAITRGL 564
            ++ AA  +L  EGP+ LT+R+IA  AG STM VYSRFGGKDG+++ LF  GFT L   ++A   T+DP+ADL + G AYR FAL +   YS+MFDRPVP   P DA + +A   L  LA  + R M+ G  A ADPL TA  VW TCHG+VSLE+    P P +DWA  YE    A+ RGL
Sbjct:   10 IVGAARRILTVEGPAGLTIRKIATAAGHSTMAVYSRFGGKDGLVDELFTEGFTRLTEALEAVIPTDDPLADLDQQGAAYRRFALDHPQHYSLMFDRPVPGDEPGDATVPIANGALDVLARGLARAMEHGALAEADPLATAVAVWGTCHGLVSLEMAGSAP-PGIDWAATYEHTCHALLRGL 189          
BLAST of mRNA_P-wetherbeei_contig5258.1.1 vs. uniprot
Match: UPI000E343A63 (TetR/AcrR family transcriptional regulator n=1 Tax=Desertimonas flava TaxID=2064846 RepID=UPI000E343A63)

HSP 1 Score: 174 bits (442), Expect = 9.970e-52
Identity = 102/189 (53.97%), Postives = 123/189 (65.08%), Query Frame = 1
Query:    4 DSVGTTLLQAASDLLAAEGPSALTVRRIAADAGVSTMNVYSRFGGKDGVIEHLFVAGFTELGAGMDAADETNDPVADLRRCGIAYRTFALANATTYSIMFDRPVPDFVPSDAALEVAGATLGKLAARIQRVMDAGMFAAADPLQTAAVVWATCHGVVSLELR--HVGPAPLVDWAVVYEQAMDAITRGL 564
            D     LLQAA DLLAAEGPSAL+VRRIAA AGVSTMNVYSRFGGK GV++ L++ GF  LG  M     T+DP+ +LRRCG AYR FA AN T YS+MFD+ V DF PS+ A  VA  +L ++  R+Q  MD G   A D  Q A  +WA  HG+VSLE+R  H G     DW  +    + A+ RGL
Sbjct:   38 DETRAALLQAAHDLLAAEGPSALSVRRIAAAAGVSTMNVYSRFGGKVGVLDELWIDGFRRLGEAMQDFPLTDDPLENLRRCGQAYRAFARANPTYYSLMFDQAVRDFEPSEHAKAVAFDSLSRVVERVQAAMDEGAIPAGDAYQVAVGLWACEHGLVSLEMRMEHDGE---FDWDHIAPATVAALVRGL 223          
BLAST of mRNA_P-wetherbeei_contig5258.1.1 vs. uniprot
Match: A0A538CXU8_9ACTN (TetR/AcrR family transcriptional regulator n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538CXU8_9ACTN)

HSP 1 Score: 166 bits (420), Expect = 1.060e-48
Identity = 94/189 (49.74%), Postives = 120/189 (63.49%), Query Frame = 1
Query:    1 LDSVGTTLLQAASDLLAAEGPSALTVRRIAADAGVSTMNVYSRFGGKDGVIEHLFVAGFTELGAGMDAADETNDPVADLRRCGIAYRTFALANATTYSIMFDRPVPDFVPSDAALEVAGATLGKLAARIQRVMDAGMFAAADPLQTAAVVWATCHGVVSLELRHVGPAPLVDWAVVYEQAMDAITRGLR 567
            LD  G  LL+AAS LLA +G  ALTVRRIAADAG STM VYSRFG KDGV++HLF+ GF  L A MD+  ++ +P+ D+ +CG+AYR  AL NAT Y +MF R VP FVPSD A  V+ ++  +L  R++R  DAG +    P   A V+W   HG V LEL  +  A   D A  Y+  +  I +G R
Sbjct:    5 LDEQGQALLEAASRLLADDGADALTVRRIAADAGCSTMGVYSRFGNKDGVVDHLFIEGFRRLIAAMDSVGDSGNPLEDMHQCGLAYRRNALENATYYLVMFARAVPGFVPSDEARTVSYSSFERLVERVRRCQDAGQYVDGSPEAMAEVIWGAIHGHVMLELVGM-QATDDDPAARYDHMLALIEQGFR 192          
BLAST of mRNA_P-wetherbeei_contig5258.1.1 vs. uniprot
Match: A0A7V9II20_9ACTN (TetR/AcrR family transcriptional regulator n=2 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9II20_9ACTN)

HSP 1 Score: 163 bits (413), Expect = 1.540e-47
Identity = 90/187 (48.13%), Postives = 119/187 (63.64%), Query Frame = 1
Query:    4 DSVGTTLLQAASDLLAAEGPSALTVRRIAADAGVSTMNVYSRFGGKDGVIEHLFVAGFTELGAGMDAADETNDPVADLRRCGIAYRTFALANATTYSIMFDRPVPDFVPSDAALEVAGATLGKLAARIQRVMDAGMFAAADPLQTAAVVWATCHGVVSLELRHVGPAPLVDWAVVYEQAMDAITRGL 564
            D+   +LL+AA  LL  +GPSALTVR IA +A +STMNVYSR+G K+G+++ L+  GF  L   M+    T+DP+ DLR  G  YR FAL N+T YS+MFDRPV  F PS  +L +A   L  LA R++R MDAG  A  D  + A+ +WAT HGVV +E R     P+ DW  +Y   + A+ RGL
Sbjct:   23 DATRDSLLRAADRLLVEQGPSALTVRAIANEAQMSTMNVYSRYGSKEGIVDELYRRGFASLNNAMNDVPRTDDPLDDLREIGAIYREFALENSTYYSLMFDRPVRYFEPSGESLSMAVDALHLLAQRVRRCMDAGQLAEGDETEVASSLWATVHGVVCIE-RFKDFTPIPDWERLYSTTVSAVIRGL 208          
BLAST of mRNA_P-wetherbeei_contig5258.1.1 vs. uniprot
Match: A0A7W0KUX2_9ACTN (TetR/AcrR family transcriptional regulator n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0KUX2_9ACTN)

HSP 1 Score: 163 bits (412), Expect = 4.520e-47
Identity = 96/194 (49.48%), Postives = 118/194 (60.82%), Query Frame = 1
Query:    4 DSVGTTLLQAASDLLAAEGPSALTVRRIAADAGVSTMNVYSRFGGKDGVIEHLFVAGFTELGAGMDAADETNDPVADLRRCGIAYRTFALANATTYSIMFDRPVPDFVPSDAALEVAGATLGKLAARIQRVMDAGMFAAADPLQTAAVVWATCHGVVSLELRHVG------PAPLVDWAVVYEQAMDAITRGLR 567
            D     LL AA  LL+A GP ALTVR IA  AG+STMNVYSRFGGKDGV++ LF  GF +L   M  A  T DP+ADLRRCG  YR FA   ATTYS+MF+RPVP++ PS AA  VA   L  LA R++R M  G     DP   A+ +W+  HG+ SLE           P+P  +W  + + A+D +  GLR
Sbjct:   45 DPTRAALLDAAHALLSAGGPEALTVRAIATRAGMSTMNVYSRFGGKDGVLDELFSHGFRQLAEQMRRAPTTADPLADLRRCGHEYRRFARERATTYSLMFERPVPEYRPSLAARTVAMDALVLLAERVERAMAEGALRRGDPFVAASALWSLVHGLASLEAATAHDHDDGEPSPF-EWDDIADVAVDGLLAGLR 237          
BLAST of mRNA_P-wetherbeei_contig5258.1.1 vs. uniprot
Match: A0A7W1LT55_9ACTN (TetR/AcrR family transcriptional regulator n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1LT55_9ACTN)

HSP 1 Score: 158 bits (399), Expect = 2.180e-45
Identity = 87/187 (46.52%), Postives = 117/187 (62.57%), Query Frame = 1
Query:    4 DSVGTTLLQAASDLLAAEGPSALTVRRIAADAGVSTMNVYSRFGGKDGVIEHLFVAGFTELGAGMDAADETNDPVADLRRCGIAYRTFALANATTYSIMFDRPVPDFVPSDAALEVAGATLGKLAARIQRVMDAGMFAAADPLQTAAVVWATCHGVVSLELRHVGPAPLVDWAVVYEQAMDAITRGL 564
            D+   +LL+AA  LL  +GP ALTVR IA +A +STMNVYSR+G K+G+++ L+  GF  L + M+   ET+DP+ DLR+ G  YR FA  N   YS+MFDRPV  F PS  ALE+A  +LG L  R+QR MD G     D  + A+ +WA  HGVV +E R      + DW  +Y   ++A+ RGL
Sbjct:   24 DATRDSLLRAADRLLVEQGPGALTVRAIANEAQMSTMNVYSRYGSKEGIVDELYRRGFASLKSAMNDVPETDDPLEDLRQIGNVYREFAQTNEAYYSLMFDRPVRYFEPSKEALEIAVDSLGLLVERVQRCMDKGQLVNRDATEVASALWAAVHGVVCIE-RFKDLLAIPDWDSLYGTTVNALIRGL 209          
BLAST of mRNA_P-wetherbeei_contig5258.1.1 vs. uniprot
Match: A0A4R7I357_9ACTN (TetR family transcriptional regulator n=1 Tax=Ilumatobacter fluminis TaxID=467091 RepID=A0A4R7I357_9ACTN)

HSP 1 Score: 151 bits (381), Expect = 7.310e-43
Identity = 92/191 (48.17%), Postives = 113/191 (59.16%), Query Frame = 1
Query:    4 DSVGTTLLQAASDLLAAEGPSALTVRRIAADAGVSTMNVYSRFGGKDGVIEHLFVAGFTELGAGMDAADETNDPVADLRRCGIAYRTFALANATTYSIMFDRPVPDFVPSDAALEVAGATLGKLAARIQRVMDAGMF---AAADPLQTAAVVWATCHGVVSLELRHVGPAPLVDWAVVYEQAMDAITRGLR 567
            D     LL AA  LLA EGP ALTVRRIA +AG+STMNVYSRFGGKDGVI+ L+V G+ +L   ++  +ET+D + DLRR  IAYR+FA  +   Y IMF    P     D AL    A LG   AR++R  + G     A  D     A +W TCHG+VSLEL  +    +VDWA +Y  A D    GLR
Sbjct:    6 DETSEALLAAAHRLLAGEGPDALTVRRIATEAGMSTMNVYSRFGGKDGVIDELYVYGYNKLFDAIEQVEETDDALDDLRRVAIAYRSFATEHPMYYEIMFRGANPSAQSVDRAL----AGLGNFVARLERAAERGAVRFPADLDSTAATAWLWGTCHGLVSLELDGIADE-VVDWAKIYASATDVAITGLR 191          
BLAST of mRNA_P-wetherbeei_contig5258.1.1 vs. uniprot
Match: A0A5M7BW39_SACHI (TetR/AcrR family transcriptional regulator n=1 Tax=Saccharopolyspora hirsuta TaxID=1837 RepID=A0A5M7BW39_SACHI)

HSP 1 Score: 143 bits (360), Expect = 9.840e-40
Identity = 80/180 (44.44%), Postives = 107/180 (59.44%), Query Frame = 1
Query:    4 DSVGTTLLQAASDLLAAEGPSALTVRRIAADAGVSTMNVYSRFGGKDGVIEHLFVAGFTELGAGMDAADETNDPVADLRRCGIAYRTFALANATTYSIMFDRPVPDFVPSDAALEVAGATLGKLAARIQRVMDAGMFAAADPLQTAAVVWATCHGVVSLELRHVGPAPLVDWAVVYEQAM 543
            D++ T LL  A ++L+A+GP  L +RR+AAD G ST  VYS FGGK G++  L+V GF   G  M+    T+DPVADL   G+AYR  ALAN   YSIMF R VPDF P D A++ A  +L  L   + R +  G+    DP +     WA  HG++SLEL+H    P    +  YE+A+
Sbjct:    9 DALRTRLLDRAGEVLSAQGPEGLGLRRLAADVGTSTTAVYSLFGGKPGLVRELYVEGFRRFGDRMEQVPRTDDPVADLCALGLAYRESALANPHFYSIMFGRAVPDFAPDDEAVDAALRSLRPLQETVARGIAQGVLVDTDPDEITFAAWALVHGLISLELQHGSMLPGSATSARYERAL 188          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5258.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X9KKB8_9ACTN5.500e-6759.57TetR/AcrR family transcriptional regulator n=1 Tax... [more]
A0A7K1B1M7_9ACTN1.480e-6259.57TetR family transcriptional regulator n=2 Tax=root... [more]
A0A6N2DP89_9ACTN1.710e-5251.38TetR/AcrR family transcriptional regulator n=1 Tax... [more]
UPI000E343A639.970e-5253.97TetR/AcrR family transcriptional regulator n=1 Tax... [more]
A0A538CXU8_9ACTN1.060e-4849.74TetR/AcrR family transcriptional regulator n=1 Tax... [more]
A0A7V9II20_9ACTN1.540e-4748.13TetR/AcrR family transcriptional regulator n=2 Tax... [more]
A0A7W0KUX2_9ACTN4.520e-4749.48TetR/AcrR family transcriptional regulator n=1 Tax... [more]
A0A7W1LT55_9ACTN2.180e-4546.52TetR/AcrR family transcriptional regulator n=1 Tax... [more]
A0A4R7I357_9ACTN7.310e-4348.17TetR family transcriptional regulator n=1 Tax=Ilum... [more]
A0A5M7BW39_SACHI9.840e-4044.44TetR/AcrR family transcriptional regulator n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5258contigP-wetherbeei_contig5258:14..586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog58344.JOEL01000011_gene3684
PFAMsTetR_N,WHG
Model size573
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.66e-35
EggNOG OGsCOG1309@1|root,COG1309@2|Bacteria,2IIK3@201174|Actinobacteria
Descriptionregulatory protein, tetR
Cds size573
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186787.378773-CDS-P-wetherbeei_contig5258:13..5861683186787.378773-CDS-P-wetherbeei_contig5258:13..586Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5258 14..586 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5258.1.1prot_P-wetherbeei_contig5258.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5258 14..586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5258.1.1

>prot_P-wetherbeei_contig5258.1.1 ID=prot_P-wetherbeei_contig5258.1.1|Name=mRNA_P-wetherbeei_contig5258.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=191bp
LDSVGTTLLQAASDLLAAEGPSALTVRRIAADAGVSTMNVYSRFGGKDGV
IEHLFVAGFTELGAGMDAADETNDPVADLRRCGIAYRTFALANATTYSIM
FDRPVPDFVPSDAALEVAGATLGKLAARIQRVMDAGMFAAADPLQTAAVV
WATCHGVVSLELRHVGPAPLVDWAVVYEQAMDAITRGLRT*
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mRNA from alignment at P-wetherbeei_contig5258:14..586+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5258.1.1 ID=mRNA_P-wetherbeei_contig5258.1.1|Name=mRNA_P-wetherbeei_contig5258.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=573bp|location=Sequence derived from alignment at P-wetherbeei_contig5258:14..586+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGACTCGGTGGGGACCACGTTGCTGCAGGCAGCGAGCGACCTGCTCGC CGCCGAAGGCCCGTCGGCGCTGACCGTGCGGCGGATCGCCGCCGATGCCG GGGTCAGCACGATGAACGTCTACTCCCGCTTCGGCGGCAAGGACGGTGTC ATCGAGCACCTCTTCGTCGCCGGGTTCACCGAGCTCGGCGCCGGCATGGA CGCCGCCGACGAGACGAACGATCCGGTGGCCGACCTGCGTCGGTGCGGCA TCGCCTACCGCACGTTCGCACTGGCGAACGCGACGACGTACAGCATCATG TTCGATCGGCCCGTGCCCGACTTCGTGCCGTCCGACGCGGCACTCGAGGT CGCCGGTGCGACGCTCGGCAAGCTGGCGGCCCGGATCCAGCGCGTGATGG ACGCGGGCATGTTCGCCGCCGCCGATCCGCTGCAGACCGCTGCGGTCGTG TGGGCGACGTGCCACGGGGTCGTCAGCCTCGAGCTGCGCCACGTCGGCCC GGCGCCGCTCGTCGATTGGGCCGTCGTCTACGAGCAAGCGATGGACGCGA TCACGCGCGGCCTGCGCACCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5258:14..586+

>mRNA_P-wetherbeei_contig5258.1.1 ID=mRNA_P-wetherbeei_contig5258.1.1|Name=mRNA_P-wetherbeei_contig5258.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=573bp|location=Sequence derived from alignment at P-wetherbeei_contig5258:14..586+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGACTCGGTGGGGACCACGTTGCTGCAGGCAGCGAGCGACCTGCTCGC
CGCCGAAGGCCCGTCGGCGCTGACCGTGCGGCGGATCGCCGCCGATGCCG
GGGTCAGCACGATGAACGTCTACTCCCGCTTCGGCGGCAAGGACGGTGTC
ATCGAGCACCTCTTCGTCGCCGGGTTCACCGAGCTCGGCGCCGGCATGGA
CGCCGCCGACGAGACGAACGATCCGGTGGCCGACCTGCGTCGGTGCGGCA
TCGCCTACCGCACGTTCGCACTGGCGAACGCGACGACGTACAGCATCATG
TTCGATCGGCCCGTGCCCGACTTCGTGCCGTCCGACGCGGCACTCGAGGT
CGCCGGTGCGACGCTCGGCAAGCTGGCGGCCCGGATCCAGCGCGTGATGG
ACGCGGGCATGTTCGCCGCCGCCGATCCGCTGCAGACCGCTGCGGTCGTG
TGGGCGACGTGCCACGGGGTCGTCAGCCTCGAGCTGCGCCACGTCGGCCC
GGCGCCGCTCGTCGATTGGGCCGTCGTCTACGAGCAAGCGATGGACGCGA
TCACGCGCGGCCTGCGCACCTGA
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