mRNA_P-wetherbeei_contig52548.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52548.1.1
Unique NamemRNA_P-wetherbeei_contig52548.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52548.1.1 vs. uniprot
Match: A0A6L5FIA5_9HYPH (NAD(P)-binding protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FIA5_9HYPH)

HSP 1 Score: 220 bits (561), Expect = 1.460e-67
Identity = 115/180 (63.89%), Postives = 132/180 (73.33%), Query Frame = 1
Query:    1 LGAACIEPALAYLNRAGAAVQFGHRLRALEFADGRATALQFGDDMVALGRDDRVVVAAPPVVATALLPGLSAPTEFRAIVNAHFKIDPPAGSEPILGVVNATVEWIFAFADRLSVTISAADRLVDAPREELARTIWREVAIAYKMGNIGMPPWQIVRERRATFAAHPTQEANRPGPETTW 540
            LGAA I+PAL  L R    + FGHRLRA+     R  +L FG+D V LG  D  V+A PP VA AL+P LSAPTEFRAIVNAHF++ PPA   P++GVVN TVEWIF+F DR+SVTIS ADRL+DAPREELA  IWREV+   K+    MPPWQIVRERRATFAA P Q+A RPGP T W
Sbjct:  201 LGAALIDPALRVLERQHGTICFGHRLRAVGIEGDRIESLDFGEDSVPLGPQDAAVLAVPPPVAAALVPELSAPTEFRAIVNAHFRLAPPADLPPLIGVVNGTVEWIFSFPDRISVTISGADRLLDAPREELAGLIWREVSQVAKLAE-PMPPWQIVRERRATFAATPEQDARRPGPRTPW 379          
BLAST of mRNA_P-wetherbeei_contig52548.1.1 vs. uniprot
Match: A0A1Q7BKA5_9PROT (Amino_oxidase domain-containing protein n=2 Tax=unclassified Alphaproteobacteria TaxID=33807 RepID=A0A1Q7BKA5_9PROT)

HSP 1 Score: 210 bits (535), Expect = 1.310e-63
Identity = 107/180 (59.44%), Postives = 130/180 (72.22%), Query Frame = 1
Query:    1 LGAACIEPALAYLNRAGAAVQFGHRLRALEFADGRATALQFGDDMVALGRDDRVVVAAPPVVATALLPGLSAPTEFRAIVNAHFKIDPPAGSEPILGVVNATVEWIFAFADRLSVTISAADRLVDAPREELARTIWREVAIAYKMGNIGMPPWQIVRERRATFAAHPTQEANRPGPETTW 540
            LG   IEPAL +L      V FGHRLRAL+F   +  +L FGD+ +A G D  V++A PP+VA  L+P L AP+EFRAIVNAHF++DPP G  PI+GVVN T+EW+F FADRLS+TISAADRL+DAPRE LA+ +W+EVA    +    +PPWQIVRERRATFAA P Q A RP   T W
Sbjct:  201 LGQVFIEPALRFLGEHNVKVAFGHRLRALDFDGDKVVSLDFGDERLAAGAD-AVILAVPPIVAADLVPDLKAPSEFRAIVNAHFRLDPPPGLAPIIGVVNGTIEWLFTFADRLSITISAADRLLDAPREMLAQKLWQEVATVTGLPT-ALPPWQIVRERRATFAATPRQNAKRPAATTAW 378          
BLAST of mRNA_P-wetherbeei_contig52548.1.1 vs. uniprot
Match: A0A1Q7BKE4_9PROT (Amino_oxidase domain-containing protein n=1 Tax=Alphaproteobacteria bacterium 13_2_20CM_2_64_7 TaxID=1803507 RepID=A0A1Q7BKE4_9PROT)

HSP 1 Score: 209 bits (531), Expect = 4.590e-63
Identity = 106/180 (58.89%), Postives = 131/180 (72.78%), Query Frame = 1
Query:    1 LGAACIEPALAYLNRAGAAVQFGHRLRALEFADGRATALQFGDDMVALGRDDRVVVAAPPVVATALLPGLSAPTEFRAIVNAHFKIDPPAGSEPILGVVNATVEWIFAFADRLSVTISAADRLVDAPREELARTIWREVAIAYKMGNIGMPPWQIVRERRATFAAHPTQEANRPGPETTW 540
            LG   +EPAL +L +  A V FGHRLRAL FA  +   L FGDD VA+G DD V++A PP+VA  L+P L  P++FRAIVNAHF+++PPAG  PI+GVVN T+EW+F F DRLSVTISAADRL+D PRE LA+ +W+EVA    +    +P WQIVRERRATFAA P + A RP  +T W
Sbjct:  201 LGQVFVEPALRFLGKHKAKVVFGHRLRALGFAHDKVVTLDFGDDKVAIGDDD-VILAVPPIVAAGLVPELKTPSQFRAIVNAHFRLEPPAGLAPIIGVVNGTMEWLFTFPDRLSVTISAADRLLDVPRETLAQNLWQEVAAVAGLST-ALPRWQIVRERRATFAATPGENAKRPDAKTAW 378          
BLAST of mRNA_P-wetherbeei_contig52548.1.1 vs. uniprot
Match: UPI00131EBA79 (hydroxysqualene dehydroxylase HpnE n=1 Tax=Bradyrhizobium sp. S69 TaxID=1641856 RepID=UPI00131EBA79)

HSP 1 Score: 207 bits (528), Expect = 1.430e-62
Identity = 108/182 (59.34%), Postives = 127/182 (69.78%), Query Frame = 1
Query:    1 LGAACIEPALAYLNRAGAAVQFGHRLRALEFADGRATALQFGDDMVALGRDDRVVVAAPPVVATALLPGLSAPTEFRAIVNAHFKIDPPAGSEPILGVVNATVEWIFAFADRLSVTISAADRLVDAPREELARTIWREVAIAYKMGNIG--MPPWQIVRERRATFAAHPTQEANRPGPETTW 540
            L A  +EPA+  L   GA++QFGH LRA   +  R + L FGDD++ALG DD VV+A PP  A ALLPGL  P++FRAIVNAHF+ DPP    PILGVV   VEW+FAF  RLS+TIS ADRLVD PREELA+ IWR++    K G +   +PPWQIVRERRATF A P Q A RPG  T W
Sbjct:  201 LSAVLVEPAIRLLQAKGASIQFGHELRAFGKSAERISELNFGDDVIALGADDMVVMAVPPRPAAALLPGLKTPSKFRAIVNAHFRFDPPKDLPPILGVVGGLVEWLFAFPQRLSITISGADRLVDMPREELAQAIWRDIC---KAGGVQGELPPWQIVRERRATFEATPEQNALRPGASTAW 379          
BLAST of mRNA_P-wetherbeei_contig52548.1.1 vs. uniprot
Match: A0A1H1TNS5_9BRAD (Squalene-associated FAD-dependent desaturase n=1 Tax=Bradyrhizobium canariense TaxID=255045 RepID=A0A1H1TNS5_9BRAD)

HSP 1 Score: 206 bits (524), Expect = 5.670e-62
Identity = 105/180 (58.33%), Postives = 126/180 (70.00%), Query Frame = 1
Query:    1 LGAACIEPALAYLNRAGAAVQFGHRLRALEFADGRATALQFGDDMVALGRDDRVVVAAPPVVATALLPGLSAPTEFRAIVNAHFKIDPPAGSEPILGVVNATVEWIFAFADRLSVTISAADRLVDAPREELARTIWREVAIAYKMGNIGMPPWQIVRERRATFAAHPTQEANRPGPETTW 540
            L A  +EPA+  L   GA+++FGH LRA   A+GR   L FGDD++ L   D VV+A PP  A +LLPGL  P++FRAIVNAHF+ DPP  + PILGVV   VEW+FAF  RLSVTIS ADRLVD PREELA+ IW ++  A ++    +PPWQIVRERRATF A P Q A RPGP T W
Sbjct:  201 LSAVLVEPAIKLLQDKGASIRFGHELRAFSMAEGRVGELNFGDDVIGLAPGDAVVMAVPPRPAASLLPGLKTPSKFRAIVNAHFRFDPPKDAPPILGVVGGLVEWLFAFPQRLSVTISNADRLVDMPREELAQAIWSDICKAARVQG-ELPPWQIVRERRATFEATPEQNALRPGPVTNW 379          
BLAST of mRNA_P-wetherbeei_contig52548.1.1 vs. uniprot
Match: A0A2J7TL14_METSI (Amino_oxidase domain-containing protein n=2 Tax=Methylocella silvestris TaxID=199596 RepID=A0A2J7TL14_METSI)

HSP 1 Score: 206 bits (524), Expect = 5.960e-62
Identity = 108/178 (60.67%), Postives = 127/178 (71.35%), Query Frame = 1
Query:    1 LGAACIEPALAYLNRAGAAVQFGHRLRALEFADGRATALQFGDDMVALGRDDRVVVAAPPVVATALLPGLSAPTEFRAIVNAHFKIDPPAGSEPILGVVNATVEWIFAFADRLSVTISAADRLVDAPREELARTIWREVAIAYKMGNIGMPPWQIVRERRATFAAHPTQEANRPGPET 534
            L +A IEPAL YL + GA V+  HRLR + F   RA+AL FGD    LG DD +++AAP  VA  LLPGL AP EFRAIVNAHFKIDPP    PILGVVN T+EW+FAF DR+S+TIS ADRL+D  REELA TIW E A A  +    +PPWQI++E+RATFAA P + A RPG  T
Sbjct:  201 LSSAFIEPALLYLVKRGADVRLDHRLRKIGFDGARASALDFGDARTELGPDDELILAAPAPVAQDLLPGLEAPVEFRAIVNAHFKIDPPQNLPPILGVVNGTIEWVFAFKDRISITISGADRLLDIGREELAATIWAETACACGLDQ-PLPPWQIIKEKRATFAATPVENARRPGAAT 377          
BLAST of mRNA_P-wetherbeei_contig52548.1.1 vs. uniprot
Match: A0A2D2D0E3_METTR (Amino_oxidase domain-containing protein n=3 Tax=Methylosinus TaxID=425 RepID=A0A2D2D0E3_METTR)

HSP 1 Score: 206 bits (523), Expect = 7.810e-62
Identity = 110/180 (61.11%), Postives = 127/180 (70.56%), Query Frame = 1
Query:    1 LGAACIEPALAYLNRAGAAVQFGHRLRALEFADGRATALQFGDDMVALGRDDRVVVAAPPVVATALLPGLSAPTEFRAIVNAHFKIDPPAGSEPILGVVNATVEWIFAFADRLSVTISAADRLVDAPREELARTIWREVAIAYKMGNIGMPPWQIVRERRATFAAHPTQEANRPGPETTW 540
            LGAA IEPALA L  AG A +F  RLRA+EFA  RA AL FG++ VALGR+D V +A PP  A  LLPGL AP EFR IVNAHFKI PP G   +LG++ +  EW+FAF DRLSVTIS ADRL+D PRE LA  IW EVA    +    +PPWQIV+E+RATFAA PTQ+  RP   T W
Sbjct:  201 LGAAFIEPALATLAAAGVAPRFAARLRAVEFAGERAAALDFGEERVALGREDAVALAVPPWTAQELLPGLVAPDEFRGIVNAHFKIAPPPGQPALLGMIGSLTEWLFAFEDRLSVTISGADRLMDEPRESLAARIWAEVAAVTGLPG-ELPPWQIVKEKRATFAATPTQQRRRPDAATRW 379          
BLAST of mRNA_P-wetherbeei_contig52548.1.1 vs. uniprot
Match: A0A1M5MD56_9BRAD (Squalene-associated FAD-dependent desaturase n=3 Tax=Bradyrhizobium TaxID=374 RepID=A0A1M5MD56_9BRAD)

HSP 1 Score: 206 bits (523), Expect = 8.010e-62
Identity = 104/180 (57.78%), Postives = 125/180 (69.44%), Query Frame = 1
Query:    1 LGAACIEPALAYLNRAGAAVQFGHRLRALEFADGRATALQFGDDMVALGRDDRVVVAAPPVVATALLPGLSAPTEFRAIVNAHFKIDPPAGSEPILGVVNATVEWIFAFADRLSVTISAADRLVDAPREELARTIWREVAIAYKMGNIGMPPWQIVRERRATFAAHPTQEANRPGPETTW 540
            L A  +EPA+  L   GA++QFGH LR    +  R   L+FGDD VA+G DD VV+A PP  A ALLPGL  P++FRAIVNAHF+ DPP    P+LGVV   +EW+FAF  RLS+TIS  DRLVD PREELA+ IWR++  A  +    +PPWQIVRERRATF A P Q A RPGP T+W
Sbjct:  201 LSAVLVEPAIRLLQGKGASIQFGHELRGFGMSAARVGELKFGDDTVAIGPDDAVVMAVPPRPAAALLPGLKTPSKFRAIVNAHFRFDPPKDMPPLLGVVGGLIEWLFAFPQRLSITISNGDRLVDMPREELAQAIWRDICKASGVQG-DLPPWQIVRERRATFEATPEQNALRPGPSTSW 379          
BLAST of mRNA_P-wetherbeei_contig52548.1.1 vs. uniprot
Match: UPI000B4B265F (hydroxysqualene dehydroxylase HpnE n=1 Tax=Rhodomicrobium TaxID=1068 RepID=UPI000B4B265F)

HSP 1 Score: 206 bits (523), Expect = 1.310e-61
Identity = 102/180 (56.67%), Postives = 128/180 (71.11%), Query Frame = 1
Query:    1 LGAACIEPALAYLNRAGAAVQFGHRLRALEFADGRATALQFGDDMVALGRDDRVVVAAPPVVATALLPGLSAPTEFRAIVNAHFKIDPPAGSEPILGVVNATVEWIFAFADRLSVTISAADRLVDAPREELARTIWREVAIAYKMGNIGMPPWQIVRERRATFAAHPTQEANRPGPETTW 540
            L +A +EPAL YL   G  VQ+GHRLRAL   + R   L FG+D V L   D VV+A P +VA  L+PGL AP++FR+IVN HF+I PP G  P+ G+VN TVEWIFAF DRLS+TIS ADRL+D PRE LAR +W+EV++   +    +PPWQI+RERRATFAA P ++A RP  +T W
Sbjct:  202 LSSAFVEPALRYLEAQGVRVQYGHRLRALGLDERRVAKLDFGEDSVPLAPGDGVVLAVPALVALTLVPGLQAPSQFRSIVNGHFRIAPPPGLAPMTGIVNGTVEWIFAFRDRLSITISGADRLLDTPRETLARNLWKEVSVITGLAE-DLPPWQIIRERRATFAALPGEDAKRPATDTAW 380          
BLAST of mRNA_P-wetherbeei_contig52548.1.1 vs. uniprot
Match: UPI001BD500C3 (hydroxysqualene dehydroxylase HpnE n=1 Tax=Bradyrhizobium sp. dw_78 TaxID=2719793 RepID=UPI001BD500C3)

HSP 1 Score: 204 bits (520), Expect = 2.250e-61
Identity = 105/180 (58.33%), Postives = 126/180 (70.00%), Query Frame = 1
Query:    1 LGAACIEPALAYLNRAGAAVQFGHRLRALEFADGRATALQFGDDMVALGRDDRVVVAAPPVVATALLPGLSAPTEFRAIVNAHFKIDPPAGSEPILGVVNATVEWIFAFADRLSVTISAADRLVDAPREELARTIWREVAIAYKMGNIGMPPWQIVRERRATFAAHPTQEANRPGPETTW 540
            L A  IEPA+  L   GA+++F   LRA   +DGR + L+FG D +ALG DD VV+A PP  A +LLPGL  P++FRAIVNAHF+ DPP  + PI+GVV   VEW+FAF  RLSVTIS  DRLVD PREELA+ IW ++  A  +G   +PPWQIVRERRATF A P Q A RPGP T W
Sbjct:  201 LSAVLIEPAVKLLQEGGASIRFSQELRAFGMSDGRISELKFGADAIALGPDDAVVMAVPPRAAASLLPGLKTPSKFRAIVNAHFRFDPPKDAPPIVGVVGGLVEWLFAFPQRLSVTISNGDRLVDMPREELAQAIWSDICKAAGVGG-ELPPWQIVRERRATFEATPEQNALRPGPVTQW 379          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52548.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L5FIA5_9HYPH1.460e-6763.89NAD(P)-binding protein n=1 Tax=Hyphomicrobiales ba... [more]
A0A1Q7BKA5_9PROT1.310e-6359.44Amino_oxidase domain-containing protein n=2 Tax=un... [more]
A0A1Q7BKE4_9PROT4.590e-6358.89Amino_oxidase domain-containing protein n=1 Tax=Al... [more]
UPI00131EBA791.430e-6259.34hydroxysqualene dehydroxylase HpnE n=1 Tax=Bradyrh... [more]
A0A1H1TNS5_9BRAD5.670e-6258.33Squalene-associated FAD-dependent desaturase n=1 T... [more]
A0A2J7TL14_METSI5.960e-6260.67Amino_oxidase domain-containing protein n=2 Tax=Me... [more]
A0A2D2D0E3_METTR7.810e-6261.11Amino_oxidase domain-containing protein n=3 Tax=Me... [more]
A0A1M5MD56_9BRAD8.010e-6257.78Squalene-associated FAD-dependent desaturase n=3 T... [more]
UPI000B4B265F1.310e-6156.67hydroxysqualene dehydroxylase HpnE n=1 Tax=Rhodomi... [more]
UPI001BD500C32.250e-6158.33hydroxysqualene dehydroxylase HpnE n=1 Tax=Bradyrh... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52548contigP-wetherbeei_contig52548:3..542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1126627.BAWE01000004_gene3144
Preferred nameMA20_16055
PFAMsAmino_oxidase
Model size540
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K21677
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.15e-63
EggNOG OGsCOG1233@1|root,COG1233@2|Bacteria,1QU52@1224|Proteobacteria,2TW02@28211|Alphaproteobacteria,3JU29@41294|Bradyrhizobiaceae
EC1.17.8.1
DescriptionFlavin containing amine oxidoreductase
Cds size540
COG categoryQ
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186787.1919026-CDS-P-wetherbeei_contig52548:2..5421683186787.1919026-CDS-P-wetherbeei_contig52548:2..542Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52548 3..542 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52548.1.1prot_P-wetherbeei_contig52548.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52548 3..542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52548.1.1

>prot_P-wetherbeei_contig52548.1.1 ID=prot_P-wetherbeei_contig52548.1.1|Name=mRNA_P-wetherbeei_contig52548.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=180bp
LGAACIEPALAYLNRAGAAVQFGHRLRALEFADGRATALQFGDDMVALGR
DDRVVVAAPPVVATALLPGLSAPTEFRAIVNAHFKIDPPAGSEPILGVVN
ATVEWIFAFADRLSVTISAADRLVDAPREELARTIWREVAIAYKMGNIGM
PPWQIVRERRATFAAHPTQEANRPGPETTW
back to top

mRNA from alignment at P-wetherbeei_contig52548:3..542+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52548.1.1 ID=mRNA_P-wetherbeei_contig52548.1.1|Name=mRNA_P-wetherbeei_contig52548.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig52548:3..542+ (Phaeothamnion wetherbeei SAG_119_79)
CTTGGCGCTGCCTGCATTGAGCCGGCGCTGGCCTATCTCAACCGCGCTGG TGCCGCCGTGCAATTCGGCCATCGCCTGCGGGCGCTGGAATTTGCCGATG GCCGGGCGACCGCGCTGCAATTCGGCGACGATATGGTGGCGCTCGGCCGG GACGACCGAGTGGTTGTCGCGGCGCCGCCGGTCGTCGCCACGGCGCTGCT GCCCGGCCTTTCGGCGCCGACCGAATTCCGTGCGATCGTCAATGCGCATT TCAAGATTGATCCGCCGGCCGGCTCGGAACCGATACTTGGCGTCGTCAAC GCCACCGTGGAGTGGATTTTCGCGTTTGCCGACCGGCTGTCGGTCACCAT CAGCGCGGCCGATCGCTTGGTCGATGCGCCGCGCGAGGAATTGGCACGGA CGATCTGGCGTGAGGTTGCGATTGCATACAAAATGGGCAATATCGGCATG CCGCCATGGCAGATTGTCCGCGAGCGTCGGGCCACTTTCGCGGCCCATCC GACACAAGAAGCCAATCGGCCGGGACCTGAAACCACATGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig52548:3..542+

>mRNA_P-wetherbeei_contig52548.1.1 ID=mRNA_P-wetherbeei_contig52548.1.1|Name=mRNA_P-wetherbeei_contig52548.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig52548:3..542+ (Phaeothamnion wetherbeei SAG_119_79)
CTTGGCGCTGCCTGCATTGAGCCGGCGCTGGCCTATCTCAACCGCGCTGG
TGCCGCCGTGCAATTCGGCCATCGCCTGCGGGCGCTGGAATTTGCCGATG
GCCGGGCGACCGCGCTGCAATTCGGCGACGATATGGTGGCGCTCGGCCGG
GACGACCGAGTGGTTGTCGCGGCGCCGCCGGTCGTCGCCACGGCGCTGCT
GCCCGGCCTTTCGGCGCCGACCGAATTCCGTGCGATCGTCAATGCGCATT
TCAAGATTGATCCGCCGGCCGGCTCGGAACCGATACTTGGCGTCGTCAAC
GCCACCGTGGAGTGGATTTTCGCGTTTGCCGACCGGCTGTCGGTCACCAT
CAGCGCGGCCGATCGCTTGGTCGATGCGCCGCGCGAGGAATTGGCACGGA
CGATCTGGCGTGAGGTTGCGATTGCATACAAAATGGGCAATATCGGCATG
CCGCCATGGCAGATTGTCCGCGAGCGTCGGGCCACTTTCGCGGCCCATCC
GACACAAGAAGCCAATCGGCCGGGACCTGAAACCACATGG
back to top