mRNA_P-wetherbeei_contig52481.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52481.1.1
Unique NamemRNA_P-wetherbeei_contig52481.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig52481.1.1 vs. uniprot
Match: D1J798_ECTSI (Cytochrome b6 n=62 Tax=Stramenopiles TaxID=33634 RepID=D1J798_ECTSI)

HSP 1 Score: 273 bits (697), Expect = 1.360e-91
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1 
Query:    1 MGKVYDWFEERLEIQSIADDITSKYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSISEAFSSVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGVT 402
            MGKVYDWFEERLEIQSIADDITSKYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSISEAFSSVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGVT
Sbjct:    1 MGKVYDWFEERLEIQSIADDITSKYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSISEAFSSVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGVT 134
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BLAST of mRNA_P-wetherbeei_contig52481.1.1 vs. uniprot
Match: J9QUX6_9STRA (Cytochrome b6 n=2 Tax=Pelagomonadales TaxID=54409 RepID=J9QUX6_9STRA)

HSP 1 Score: 258 bits (658), Expect = 1.180e-85
Identity = 124/134 (92.54%), Postives = 128/134 (95.52%), Query Frame = 1 
Query:    1 MGKVYDWFEERLEIQSIADDITSKYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSISEAFSSVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGVT 402
            M KVYDWFEERLEIQSIADDITSKYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRP++S+AF+SVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGV L   T SFGVT
Sbjct:    1 MSKVYDWFEERLEIQSIADDITSKYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPTVSDAFASVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVLLGAVTASFGVT 134
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BLAST of mRNA_P-wetherbeei_contig52481.1.1 vs. uniprot
Match: CYB6_THAPS (Cytochrome b6 n=103 Tax=cellular organisms TaxID=131567 RepID=CYB6_THAPS)

HSP 1 Score: 257 bits (657), Expect = 1.680e-85
Identity = 122/134 (91.04%), Postives = 130/134 (97.01%), Query Frame = 1 
Query:    1 MGKVYDWFEERLEIQSIADDITSKYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSISEAFSSVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGVT 402
            MGKVYDWFEERLE+Q+IADDI+SKYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPS+ +AF+SVEYIMT VNFGWLIRSIHRWSASMMV+ML+LHVFRVYLTGGFKKPRELTWVTGV LAV TVSFGVT
Sbjct:    1 MGKVYDWFEERLEVQAIADDISSKYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSVVDAFASVEYIMTSVNFGWLIRSIHRWSASMMVMMLVLHVFRVYLTGGFKKPRELTWVTGVILAVVTVSFGVT 134
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BLAST of mRNA_P-wetherbeei_contig52481.1.1 vs. uniprot
Match: CYB6_GUITH (Cytochrome b6 n=13 Tax=Eukaryota TaxID=2759 RepID=CYB6_GUITH)

HSP 1 Score: 256 bits (654), Expect = 4.810e-85
Identity = 120/134 (89.55%), Postives = 130/134 (97.01%), Query Frame = 1 
Query:    1 MGKVYDWFEERLEIQSIADDITSKYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSISEAFSSVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGVT 402
            MGKVYDWFEERLEIQ+IADDITSKYVPPHVNIFYC GGI FTCF++QVATGFAMTFYYRP+++EAF+SVEYIMTEVN+GWL RS+HRWSASMMVLM+ILHVFRVYLTGGFKKPRELTWVTGVTLAV TVSFGVT
Sbjct:    1 MGKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCIGGITFTCFIIQVATGFAMTFYYRPTVAEAFASVEYIMTEVNYGWLFRSMHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVTLAVVTVSFGVT 134
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BLAST of mRNA_P-wetherbeei_contig52481.1.1 vs. uniprot
Match: CYB6_GRATL (Cytochrome b6 n=171 Tax=Eukaryota TaxID=2759 RepID=CYB6_GRATL)

HSP 1 Score: 254 bits (648), Expect = 3.940e-84
Identity = 122/134 (91.04%), Postives = 130/134 (97.01%), Query Frame = 1 
Query:    1 MGKVYDWFEERLEIQSIADDITSKYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSISEAFSSVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGVT 402
            MGKVYDWFEERLEIQ+IADDITSKYVPPHVNIFYC GGIVFT FL+QVA+GFAMTFYYRP+++EAFSSVEYIMT+VNFGWLIRSIHRWSASMMVLMLILH+FRVYLTGGFKKPRELTWVTGV LAV TVSFGVT
Sbjct:    1 MGKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCIGGIVFTSFLIQVASGFAMTFYYRPTVAEAFSSVEYIMTDVNFGWLIRSIHRWSASMMVLMLILHMFRVYLTGGFKKPRELTWVTGVILAVLTVSFGVT 134
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BLAST of mRNA_P-wetherbeei_contig52481.1.1 vs. uniprot
Match: A0A0D3M5L9_9STRA (Cytochrome b6 n=19 Tax=Ochrophyta TaxID=2696291 RepID=A0A0D3M5L9_9STRA)

HSP 1 Score: 252 bits (644), Expect = 1.600e-83
Identity = 118/134 (88.06%), Postives = 129/134 (96.27%), Query Frame = 1 
Query:    1 MGKVYDWFEERLEIQSIADDITSKYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSISEAFSSVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGVT 402
            MGKVYDWFEERLEIQ+IADDITSKYVPPHVNIFYCFGGI  TCFL+QVATGFAMTFYYRP++++AF+SVEY+MTE NFGWLIRSIHRWSASMMVLM+ILHVFRVYLTGGFK+PRELTWVTGV L+V TVSFGVT
Sbjct:    1 MGKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCFGGITLTCFLIQVATGFAMTFYYRPTVTDAFASVEYLMTEANFGWLIRSIHRWSASMMVLMMILHVFRVYLTGGFKRPRELTWVTGVLLSVITVSFGVT 134
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BLAST of mRNA_P-wetherbeei_contig52481.1.1 vs. uniprot
Match: W0RYI6_PORPP (Cytochrome b6 n=17 Tax=Eukaryota TaxID=2759 RepID=W0RYI6_PORPP)

HSP 1 Score: 252 bits (644), Expect = 1.600e-83
Identity = 120/134 (89.55%), Postives = 129/134 (96.27%), Query Frame = 1 
Query:    1 MGKVYDWFEERLEIQSIADDITSKYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSISEAFSSVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGVT 402
            MGKVYDWF+ERLEIQ+IADDITSKYVPPHVNIFYCFGGIV TCF++QVA+GFAMTFYYRPS++EAFSSV YIMT+VNFGWLIRSIHRWSASMMVLM+ILH FRVYLTGGFK PRELTWVTGVTLAV TVSFGVT
Sbjct:    1 MGKVYDWFQERLEIQAIADDITSKYVPPHVNIFYCFGGIVLTCFIMQVASGFAMTFYYRPSVAEAFSSVSYIMTDVNFGWLIRSIHRWSASMMVLMMILHSFRVYLTGGFKTPRELTWVTGVTLAVLTVSFGVT 134
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BLAST of mRNA_P-wetherbeei_contig52481.1.1 vs. uniprot
Match: A0A220IKU8_TRITU (Cytochrome b6 (Fragment) n=2 Tax=cellular organisms TaxID=131567 RepID=A0A220IKU8_TRITU)

HSP 1 Score: 251 bits (640), Expect = 3.220e-83
Identity = 119/134 (88.81%), Postives = 126/134 (94.03%), Query Frame = 1 
Query:    1 MGKVYDWFEERLEIQSIADDITSKYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSISEAFSSVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGVT 402
            M KVYDWFEERLEIQ+IADDITSKYVPPHVNIFYC GGI  TCFLVQVATGFAMTFYYRP+++EAFSSV+YIMTE NFGWLIRS+HRWSASMMVLM+ILHVFRVYLTGGFKKPRELTWVTGV LAV T SFGVT
Sbjct:    1 MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFSSVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVT 134
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BLAST of mRNA_P-wetherbeei_contig52481.1.1 vs. uniprot
Match: CYB6_CHLRE (Cytochrome b6 n=220 Tax=cellular organisms TaxID=131567 RepID=CYB6_CHLRE)

HSP 1 Score: 251 bits (642), Expect = 3.230e-83
Identity = 118/134 (88.06%), Postives = 129/134 (96.27%), Query Frame = 1 
Query:    1 MGKVYDWFEERLEIQSIADDITSKYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSISEAFSSVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGVT 402
            M KVYDWFEERLEIQ+IADDITSKYVPPHVNIFYC GGI FTCFLVQVATGFAMTFYYRP+++EAF+SV+YIMT+VNFGWLIRSIHRWSASMMVLM++LHVFRVYLTGGFK+PRELTWVTGV +AV TVSFGVT
Sbjct:    1 MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCIGGITFTCFLVQVATGFAMTFYYRPTVAEAFASVQYIMTDVNFGWLIRSIHRWSASMMVLMMVLHVFRVYLTGGFKRPRELTWVTGVIMAVCTVSFGVT 134
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BLAST of mRNA_P-wetherbeei_contig52481.1.1 vs. uniprot
Match: A0A7H0LY87_9LILI (Cytochrome b6 n=1 Tax=Martellidendron hornei TaxID=240464 RepID=A0A7H0LY87_9LILI)

HSP 1 Score: 251 bits (640), Expect = 6.510e-83
Identity = 119/134 (88.81%), Postives = 126/134 (94.03%), Query Frame = 1 
Query:    1 MGKVYDWFEERLEIQSIADDITSKYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSISEAFSSVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGVT 402
            M KVYDWFEERLEIQ+IADDITSKYVPPHVNIFYC GGI  TCFLVQVATGFAMTFYYRP+++EAFSSV+YIMTE NFGWLIRS+HRWSASMMVLM+ILHVFRVYLTGGFKKPRELTWVTGV LAV T SFGVT
Sbjct:    1 MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFSSVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVT 134
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52481.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J798_ECTSI1.360e-91100.00Cytochrome b6 n=62 Tax=Stramenopiles TaxID=33634 R... [more]
J9QUX6_9STRA1.180e-8592.54Cytochrome b6 n=2 Tax=Pelagomonadales TaxID=54409 ... [more]
CYB6_THAPS1.680e-8591.04Cytochrome b6 n=103 Tax=cellular organisms TaxID=1... [more]
CYB6_GUITH4.810e-8589.55Cytochrome b6 n=13 Tax=Eukaryota TaxID=2759 RepID=... [more]
CYB6_GRATL3.940e-8491.04Cytochrome b6 n=171 Tax=Eukaryota TaxID=2759 RepID... [more]
A0A0D3M5L9_9STRA1.600e-8388.06Cytochrome b6 n=19 Tax=Ochrophyta TaxID=2696291 Re... [more]
W0RYI6_PORPP1.600e-8389.55Cytochrome b6 n=17 Tax=Eukaryota TaxID=2759 RepID=... [more]
A0A220IKU8_TRITU3.220e-8388.81Cytochrome b6 (Fragment) n=2 Tax=cellular organism... [more]
CYB6_CHLRE3.230e-8388.06Cytochrome b6 n=220 Tax=cellular organisms TaxID=1... [more]
A0A7H0LY87_9LILI6.510e-8388.81Cytochrome b6 n=1 Tax=Martellidendron hornei TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52481contigP-wetherbeei_contig52481:1..402 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D1J798
Preferred namepetB
PFAMsCytochrom_B_C,Cytochrome_B
Model size402
Max annot lvl2759|Eukaryota
KEGG koko:K00412,ko:K02635,ko:K02705
KEGG Pathwayko00190,ko00195,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map00195,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00151,M00152,M00161,M00162
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
Exons1
Evalue2.23e-92
EggNOG OGsCOG1290@1|root,KOG4663@2759|Eukaryota
Descriptionelectron transfer activity
Cds size402
COG categoryC
BRITEko00000,ko00001,ko00002,ko00194,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186786.1352236-CDS-P-wetherbeei_contig52481:0..4021683186786.1352236-CDS-P-wetherbeei_contig52481:0..402Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52481 1..402 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52481.1.1prot_P-wetherbeei_contig52481.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52481 1..402 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52481.1.1

>prot_P-wetherbeei_contig52481.1.1 ID=prot_P-wetherbeei_contig52481.1.1|Name=mRNA_P-wetherbeei_contig52481.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=134bp
MGKVYDWFEERLEIQSIADDITSKYVPPHVNIFYCFGGIVFTCFLVQVAT
GFAMTFYYRPSISEAFSSVEYIMTEVNFGWLIRSIHRWSASMMVLMLILH
VFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGVT
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mRNA from alignment at P-wetherbeei_contig52481:1..402-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52481.1.1 ID=mRNA_P-wetherbeei_contig52481.1.1|Name=mRNA_P-wetherbeei_contig52481.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig52481:1..402- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGTAAGGTGTACGATTGGTTTGAAGAAAGATTAGAAATTCAATCAAT
TGCTGATGATATTACAAGTAAGTATGTTCCACCACATGTAAATATTTTTT
ATTGTTTTGGTGGTATTGTTTTTACATGTTTCTTAGTTCAAGTTGCAACA
GGATTTGCAATGACATTTTATTATAGACCTAGTATCAGTGAAGCTTTTTC
ATCGGTTGAATATATTATGACTGAAGTAAATTTTGGTTGGCTTATTCGCT
CTATTCATAGATGGTCAGCAAGTATGATGGTTCTTATGCTAATTTTACAC
GTTTTTCGTGTATATTTAACTGGAGGGTTTAAAAAGCCACGTGAATTAAC
ATGGGTTACTGGAGTAACTTTAGCTGTAACTACTGTTTCTTTTGGTGTTA
CT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52481:1..402-

>mRNA_P-wetherbeei_contig52481.1.1 ID=mRNA_P-wetherbeei_contig52481.1.1|Name=mRNA_P-wetherbeei_contig52481.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig52481:1..402- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGTAAGGTGTACGATTGGTTTGAAGAAAGATTAGAAATTCAATCAAT
TGCTGATGATATTACAAGTAAGTATGTTCCACCACATGTAAATATTTTTT
ATTGTTTTGGTGGTATTGTTTTTACATGTTTCTTAGTTCAAGTTGCAACA
GGATTTGCAATGACATTTTATTATAGACCTAGTATCAGTGAAGCTTTTTC
ATCGGTTGAATATATTATGACTGAAGTAAATTTTGGTTGGCTTATTCGCT
CTATTCATAGATGGTCAGCAAGTATGATGGTTCTTATGCTAATTTTACAC
GTTTTTCGTGTATATTTAACTGGAGGGTTTAAAAAGCCACGTGAATTAAC
ATGGGTTACTGGAGTAACTTTAGCTGTAACTACTGTTTCTTTTGGTGTTA
CT
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