mRNA_P-wetherbeei_contig52235.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig52235.1.1
Unique NamemRNA_P-wetherbeei_contig52235.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig52235.1.1 vs. uniprot
Match: UPI0019A5498A (Uncharacterized protein n=1 Tax=Methyloceanibacter sp. TaxID=1965321 RepID=UPI0019A5498A)

HSP 1 Score: 79.7 bits (195), Expect = 3.250e-18
Identity = 47/69 (68.12%), Postives = 51/69 (73.91%), Query Frame = 1
Query:    1 KALAAVSRWPASRQDDAAELLLALDRLGGPTYVASEEELATIDEALAEVERGEFATDVEVEAAFARFRR 207
            KAL AV  WP  RQD+AA LLLALD+LG   Y AS EEL  IDEAL +V RGE AT VEVE AFARFR+
Sbjct:    3 KALEAVRSWPKHRQDEAAALLLALDQLGPTPYRASAEELRAIDEALEQVARGEQATAVEVENAFARFRK 71          
BLAST of mRNA_P-wetherbeei_contig52235.1.1 vs. uniprot
Match: A0A357CFV5_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A357CFV5_9HYPH)

HSP 1 Score: 74.3 bits (181), Expect = 4.420e-16
Identity = 43/69 (62.32%), Postives = 51/69 (73.91%), Query Frame = 1
Query:    1 KALAAVSRWPASRQDDAAELLLALDRLGGPTYVASEEELATIDEALAEVERGEFATDVEVEAAFARFRR 207
            KAL AV  WP  RQ++AAELLLALDRLG   Y AS +EL+ IDEAL +V R + A+  EVE AFARFR+
Sbjct:    3 KALNAVRGWPQDRQNEAAELLLALDRLGPAPYRASADELSAIDEALKQVARDKQASPAEVEEAFARFRK 71          
BLAST of mRNA_P-wetherbeei_contig52235.1.1 vs. uniprot
Match: A0A4Q5PIN5_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium TaxID=2072420 RepID=A0A4Q5PIN5_9BRAD)

HSP 1 Score: 57.4 bits (137), Expect = 2.540e-9
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 1
Query:   25 WPASRQDDAAELLLALDR-LGGPTYVASEEELATIDEALAEVERGEFATDVEVEAAFARFRR 207
            WP + Q +   +   +++ LG  TY AS++EL TIDEA+A ++ GEFAT  EVEA FA+FRR
Sbjct:   16 WPETAQAELVAVAKEIEQELGAHTYEASDDELQTIDEAVASLDAGEFATKAEVEAVFAKFRR 77          
BLAST of mRNA_P-wetherbeei_contig52235.1.1 vs. uniprot
Match: A0A345ZVP4_9HYPH (Uncharacterized protein n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A345ZVP4_9HYPH)

HSP 1 Score: 55.8 bits (133), Expect = 1.000e-8
Identity = 32/69 (46.38%), Postives = 42/69 (60.87%), Query Frame = 1
Query:    1 KALAAVSRWPASRQDDAAELLLALDRLGGPTYVASEEELATIDEALAEVERGEFATDVEVEAAFARFRR 207
            K L     W    Q++ A++ L ++      Y A+ EEL  IDEALAEV RGE A+D EVEA FA++RR
Sbjct:    7 KVLTRAQAWSEQDQEELAQVALEIEARRHGLYHATPEELRAIDEALAEVARGEIASDEEVEAVFAKYRR 75          
BLAST of mRNA_P-wetherbeei_contig52235.1.1 vs. uniprot
Match: UPI001BA97FC3 (hypothetical protein n=2 Tax=Rhodopseudomonas sp. SK50-23 TaxID=340268 RepID=UPI001BA97FC3)

HSP 1 Score: 55.8 bits (133), Expect = 1.030e-8
Identity = 34/65 (52.31%), Postives = 43/65 (66.15%), Query Frame = 1
Query:   25 WPASRQDDAAELLLAL----DRLGGPTYVASEEELATIDEALAEVERGEFATDVEVEAAFARFRR 207
            WP + Q   AEL+ A       L   TY A++EEL  IDEA+A ++RGEFAT+ E+E AFARFRR
Sbjct:   16 WPETAQ---AELMAAAKEIEQELSENTYDATDEELRIIDEAVASLDRGEFATEAEIEEAFARFRR 77          
BLAST of mRNA_P-wetherbeei_contig52235.1.1 vs. uniprot
Match: A0A0R3C8N4_9BRAD (Uncharacterized protein n=13 Tax=Bradyrhizobium TaxID=374 RepID=A0A0R3C8N4_9BRAD)

HSP 1 Score: 55.5 bits (132), Expect = 1.490e-8
Identity = 30/62 (48.39%), Postives = 41/62 (66.13%), Query Frame = 1
Query:   25 WPASRQDDAAELLLALD-RLGGPTYVASEEELATIDEALAEVERGEFATDVEVEAAFARFRR 207
            WP   Q++   +   ++  L G  YVA++EEL +ID ALA ++RGEFATD EV   FA+FRR
Sbjct:   16 WPEEAQNELVAIASEIESELLGGEYVATQEELRSIDAALASIDRGEFATDAEVAEVFAKFRR 77          
BLAST of mRNA_P-wetherbeei_contig52235.1.1 vs. uniprot
Match: A0A6L9MLF3_9HYPH (Uncharacterized protein n=1 Tax=Aurantimonas aggregata TaxID=2047720 RepID=A0A6L9MLF3_9HYPH)

HSP 1 Score: 55.1 bits (131), Expect = 1.970e-8
Identity = 32/69 (46.38%), Postives = 46/69 (66.67%), Query Frame = 1
Query:    1 KALAAVSRWPASRQDDAAELLLALDRLGGPTYVASEEELATIDEALAEVERGEFATDVEVEAAFARFRR 207
            +A+A V   PA +QD+ A +LL L    GP Y  + EE A++  +LAE ERGEFATD +V+A +A++ R
Sbjct:    7 QAVARVRALPADQQDEFARVLLRLAGDDGPVYQLTPEENASLAGSLAEAERGEFATDEQVQAVWAKYNR 75          
BLAST of mRNA_P-wetherbeei_contig52235.1.1 vs. uniprot
Match: A0A537PTD5_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537PTD5_9PROT)

HSP 1 Score: 54.3 bits (129), Expect = 4.260e-8
Identity = 30/64 (46.88%), Postives = 41/64 (64.06%), Query Frame = 1
Query:   16 VSRWPASRQDDAAELLLALD-RLGGPTYVASEEELATIDEALAEVERGEFATDVEVEAAFARFR 204
            V  WP + QD+   +   ++  L    YVA+ EEL  ID ALA ++ G+FA+D EVEAAFA+FR
Sbjct:   13 VQTWPEAAQDELVAVAKQIESELQANEYVATREELQNIDAALASIDGGDFASDAEVEAAFAKFR 76          
BLAST of mRNA_P-wetherbeei_contig52235.1.1 vs. uniprot
Match: A0A849IGW6_9HYPH (Uncharacterized protein n=1 Tax=Enterovirga sp. DB1703 TaxID=2730920 RepID=A0A849IGW6_9HYPH)

HSP 1 Score: 53.5 bits (127), Expect = 8.170e-8
Identity = 28/63 (44.44%), Postives = 39/63 (61.90%), Query Frame = 1
Query:   16 VSRWPASRQDDAAELLLALDRLGGPTYVASEEELATIDEALAEVERGEFATDVEVEAAFARFR 204
            V  WP  RQ+DA  +LL ++ +       SEE+LA ++EA  E+ERGE A+D EV A   R+R
Sbjct:   13 VKTWPPERQEDAVRILLRMEEIDAEGSGLSEEDLAALEEAEMEIERGEVASDEEVRALLDRYR 75          
BLAST of mRNA_P-wetherbeei_contig52235.1.1 vs. uniprot
Match: A0A1F2XPL8_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium RBG_16_64_48 TaxID=1797215 RepID=A0A1F2XPL8_9PROT)

HSP 1 Score: 53.5 bits (127), Expect = 8.370e-8
Identity = 30/62 (48.39%), Postives = 40/62 (64.52%), Query Frame = 1
Query:   25 WPASRQDDAAELLLALDR-LGGPTYVASEEELATIDEALAEVERGEFATDVEVEAAFARFRR 207
            WP S Q D A+  L ++R L   TY A+ EE+A I+  L E E G+FAT+ EVEA  A++RR
Sbjct:   16 WPESAQVDLAQAALEIERELQQDTYTATPEEVAAIERGLKEAELGQFATEAEVEAVLAKYRR 77          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52235.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019A5498A3.250e-1868.12Uncharacterized protein n=1 Tax=Methyloceanibacter... [more]
A0A357CFV5_9HYPH4.420e-1662.32Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
A0A4Q5PIN5_9BRAD2.540e-950.00Uncharacterized protein n=1 Tax=Bradyrhizobiaceae ... [more]
A0A345ZVP4_9HYPH1.000e-846.38Uncharacterized protein n=1 Tax=Pseudolabrys taiwa... [more]
UPI001BA97FC31.030e-852.31hypothetical protein n=2 Tax=Rhodopseudomonas sp. ... [more]
A0A0R3C8N4_9BRAD1.490e-848.39Uncharacterized protein n=13 Tax=Bradyrhizobium Ta... [more]
A0A6L9MLF3_9HYPH1.970e-846.38Uncharacterized protein n=1 Tax=Aurantimonas aggre... [more]
A0A537PTD5_9PROT4.260e-846.88Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A849IGW6_9HYPH8.170e-844.44Uncharacterized protein n=1 Tax=Enterovirga sp. DB... [more]
A0A1F2XPL8_9PROT8.370e-848.39Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52235contigP-wetherbeei_contig52235:1..210 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1038859.AXAU01000020_gene5495
Model size210
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.86e-08
EggNOG OGs28S1C@1|root,2ZED8@2|Bacteria,1NDU2@1224|Proteobacteria,2UJ45@28211|Alphaproteobacteria,3K20I@41294|Bradyrhizobiaceae
Cds size210
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186783.4018888-CDS-P-wetherbeei_contig52235:0..2101683186783.4018888-CDS-P-wetherbeei_contig52235:0..210Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig52235 1..210 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52235.1.1prot_P-wetherbeei_contig52235.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig52235 1..210 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig52235.1.1

>prot_P-wetherbeei_contig52235.1.1 ID=prot_P-wetherbeei_contig52235.1.1|Name=mRNA_P-wetherbeei_contig52235.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=70bp
KALAAVSRWPASRQDDAAELLLALDRLGGPTYVASEEELATIDEALAEVE
RGEFATDVEVEAAFARFRR*
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mRNA from alignment at P-wetherbeei_contig52235:1..210+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig52235.1.1 ID=mRNA_P-wetherbeei_contig52235.1.1|Name=mRNA_P-wetherbeei_contig52235.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=210bp|location=Sequence derived from alignment at P-wetherbeei_contig52235:1..210+ (Phaeothamnion wetherbeei SAG_119_79)
AAAGCGCTTGCCGCCGTCAGTCGCTGGCCAGCCTCGCGCCAGGACGATGC AGCGGAGTTGCTGCTGGCCTTGGATCGGCTGGGTGGCCCGACCTATGTGG CGAGCGAAGAAGAGCTTGCCACGATCGATGAAGCGCTGGCGGAAGTCGAG CGCGGCGAGTTTGCGACGGACGTGGAGGTTGAAGCTGCGTTTGCTCGTTT TCGTCGATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig52235:1..210+

>mRNA_P-wetherbeei_contig52235.1.1 ID=mRNA_P-wetherbeei_contig52235.1.1|Name=mRNA_P-wetherbeei_contig52235.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=210bp|location=Sequence derived from alignment at P-wetherbeei_contig52235:1..210+ (Phaeothamnion wetherbeei SAG_119_79)
AAAGCGCTTGCCGCCGTCAGTCGCTGGCCAGCCTCGCGCCAGGACGATGC
AGCGGAGTTGCTGCTGGCCTTGGATCGGCTGGGTGGCCCGACCTATGTGG
CGAGCGAAGAAGAGCTTGCCACGATCGATGAAGCGCTGGCGGAAGTCGAG
CGCGGCGAGTTTGCGACGGACGTGGAGGTTGAAGCTGCGTTTGCTCGTTT
TCGTCGATGA
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