prot_P-wetherbeei_contig52231.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig52231.1.1
Unique Nameprot_P-wetherbeei_contig52231.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length57
Homology
BLAST of mRNA_P-wetherbeei_contig52231.1.1 vs. uniprot
Match: UPI00083A90E3 (sigma-70 family RNA polymerase sigma factor n=1 Tax=Phenylobacterium sp. CCH9-H3 TaxID=1768774 RepID=UPI00083A90E3)

HSP 1 Score: 51.6 bits (122), Expect = 1.670e-6
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 0
Query:   17 DKGLDLLYRRYSGWLTGMLRRRFGASIGDSADDLVQETYVR 57
            +  LD LYR Y+GWL   L RRFG ++ ++A+DLVQE Y+R
Sbjct:   12 EASLDGLYRLYAGWLRRALHRRFGRAVAETAEDLVQEAYLR 52          
BLAST of mRNA_P-wetherbeei_contig52231.1.1 vs. uniprot
Match: UPI0018E2B3F1 (RNA polymerase sigma factor n=2 Tax=Caulobacter hibisci TaxID=2035993 RepID=UPI0018E2B3F1)

HSP 1 Score: 51.2 bits (121), Expect = 2.340e-6
Identity = 23/50 (46.00%), Postives = 34/50 (68.00%), Query Frame = 0
Query:    8 PIASPQPGEDKGLDLLYRRYSGWLTGMLRRRFGASIGDSADDLVQETYVR 57
            P   P P     LD ++RRY GWL+ MLR+R+GA+   +A+DL Q+T++R
Sbjct:    6 PAFEPSPKLSAALDRVFRRYHGWLSTMLRKRYGAA---AAEDLAQDTFLR 52          
BLAST of mRNA_P-wetherbeei_contig52231.1.1 vs. uniprot
Match: UPI0018F8768E (RNA polymerase sigma factor n=1 Tax=Allosphingosinicella vermicomposti TaxID=614671 RepID=UPI0018F8768E)

HSP 1 Score: 50.8 bits (120), Expect = 3.570e-6
Identity = 29/56 (51.79%), Postives = 36/56 (64.29%), Query Frame = 0
Query:    3 RTQRRPIASP-QPGEDKGLDLLYRRYSGWLTGMLRRRFGASIGDSADDLVQETYVR 57
            R +R+  A+P QP     +DLLYRRYSGWL  ML  R   +  +  DD+VQETYVR
Sbjct:    4 RDERKARAAPLQPEAVSAVDLLYRRYSGWLNRMLSLRLRTTSVE-VDDIVQETYVR 58          
BLAST of mRNA_P-wetherbeei_contig52231.1.1 vs. uniprot
Match: A0A840A1Y4_9CAUL (RNA polymerase sigma-70 factor (ECF subfamily) n=1 Tax=Phenylobacterium haematophilum TaxID=98513 RepID=A0A840A1Y4_9CAUL)

HSP 1 Score: 50.4 bits (119), Expect = 4.870e-6
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 0
Query:   18 KGLDLLYRRYSGWLTGMLRRRFGASIGDSADDLVQETYVR 57
            + L +LYRRYSGWL  MLRRR+G       +D+VQETY+R
Sbjct:   24 ESLSVLYRRYSGWLKAMLRRRYGID----GEDVVQETYIR 59          
BLAST of mRNA_P-wetherbeei_contig52231.1.1 vs. uniprot
Match: UPI001F5B0045 (RNA polymerase sigma factor n=1 Tax=Sphingobium sp. Sx8-8 TaxID=2933617 RepID=UPI001F5B0045)

HSP 1 Score: 48.1 bits (113), Expect = 2.860e-5
Identity = 22/38 (57.89%), Postives = 29/38 (76.32%), Query Frame = 0
Query:   20 LDLLYRRYSGWLTGMLRRRFGASIGDSADDLVQETYVR 57
            +D LYR +SGWL GML+RRF A +G   +DLV +TY+R
Sbjct:    2 IDRLYRNHSGWLLGMLQRRF-AGMGLEPEDLVHDTYIR 38          
BLAST of mRNA_P-wetherbeei_contig52231.1.1 vs. uniprot
Match: A0A2W6XCI1_9CAUL (RNA polymerase subunit sigma-70 n=3 Tax=unclassified Brevundimonas TaxID=2622653 RepID=A0A2W6XCI1_9CAUL)

HSP 1 Score: 47.4 bits (111), Expect = 7.700e-5
Identity = 23/41 (56.10%), Postives = 27/41 (65.85%), Query Frame = 0
Query:   17 DKGLDLLYRRYSGWLTGMLRRRFGASIGDSADDLVQETYVR 57
            D GL  LYR YSGWL G LR+RFG    D  +DL QE ++R
Sbjct:   33 DAGLHDLYRAYSGWLKGRLRKRFG----DETEDLAQEAWLR 69          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig52231.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
UPI00083A90E31.670e-653.66sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
UPI0018E2B3F12.340e-646.00RNA polymerase sigma factor n=2 Tax=Caulobacter hi... [more]
UPI0018F8768E3.570e-651.79RNA polymerase sigma factor n=1 Tax=Allosphingosin... [more]
A0A840A1Y4_9CAUL4.870e-657.50RNA polymerase sigma-70 factor (ECF subfamily) n=1... [more]
UPI001F5B00452.860e-557.89RNA polymerase sigma factor n=1 Tax=Sphingobium sp... [more]
A0A2W6XCI1_9CAUL7.700e-556.10RNA polymerase subunit sigma-70 n=3 Tax=unclassifi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007627RNA polymerase sigma-70 region 2PFAMPF04542Sigma70_r2coord: 23..57
e-value: 7.5E-5
score: 22.4
NoneNo IPR availableGENE3D1.10.1740.10coord: 1..57
e-value: 1.5E-6
score: 29.9
IPR013325RNA polymerase sigma factor, region 2SUPERFAMILY88946Sigma2 domain of RNA polymerase sigma factorscoord: 9..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig52231contigP-wetherbeei_contig52231:3..173 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig52231.1.1mRNA_P-wetherbeei_contig52231.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig52231 3..173 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig52231.1.1 ID=prot_P-wetherbeei_contig52231.1.1|Name=mRNA_P-wetherbeei_contig52231.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=57bp
MRRTQRRPIASPQPGEDKGLDLLYRRYSGWLTGMLRRRFGASIGDSADDL
VQETYVR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007627RNA_pol_sigma70_r2
IPR013325RNA_pol_sigma_r2