prot_P-wetherbeei_contig51943.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig51943.1.1
Unique Nameprot_P-wetherbeei_contig51943.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length89
Homology
BLAST of mRNA_P-wetherbeei_contig51943.1.1 vs. uniprot
Match: A0A537SGK0_9PROT (RNA polymerase sigma factor RpoD (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537SGK0_9PROT)

HSP 1 Score: 148 bits (374), Expect = 3.040e-42
Identity = 76/85 (89.41%), Postives = 80/85 (94.12%), Query Frame = 0
Query:    1 MYLREMGSVELLSREGEIAIAKRIEAGHEAMIAGLCESPLTFQAIIIWRDELNEGKVLLRDIIDLEATYAGPEAKAVPPVVLPAE 85
            MYLREMGSVELLSREGEIAIAKRIEAG EAMIAGLCESPLTFQAIIIWRDELNEGKV LRDIIDLEATYAGP+AKA+P  V+ A+
Sbjct:  136 MYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELNEGKVFLRDIIDLEATYAGPDAKAMPGPVIGAD 220          
BLAST of mRNA_P-wetherbeei_contig51943.1.1 vs. uniprot
Match: A0A7C4TSH5_9HYPH (RNA polymerase sigma factor RpoD n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4TSH5_9HYPH)

HSP 1 Score: 154 bits (388), Expect = 7.260e-42
Identity = 81/90 (90.00%), Postives = 82/90 (91.11%), Query Frame = 0
Query:    1 MYLREMGSVELLSREGEIAIAKRIEAGHEAMIAGLCESPLTFQAIIIWRDELNEGKVLLRDIIDLEATYAGPEAKAVPPVVLPAEP-VPP 89
            MYLREMGSVELLSREGEIAIAKRIEAGHEAMIAGLCESPLTFQAIIIWRDELN GKVLLRDIIDLEATY GPEAK  PP+V P  P VPP
Sbjct:  128 MYLREMGSVELLSREGEIAIAKRIEAGHEAMIAGLCESPLTFQAIIIWRDELNAGKVLLRDIIDLEATYEGPEAKVPPPIVHPGAPHVPP 217          
BLAST of mRNA_P-wetherbeei_contig51943.1.1 vs. uniprot
Match: A0A537MY73_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537MY73_9PROT)

HSP 1 Score: 149 bits (375), Expect = 2.760e-41
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 0
Query:    1 MYLREMGSVELLSREGEIAIAKRIEAGHEAMIAGLCESPLTFQAIIIWRDELNEGKVLLRDIIDLEATYAGPEAKAVP 78
            MYLREMGSVELLSREGEIAIAKRIEAG EAMIAGLCESPLTFQAIIIWRDELNEGKV LRDIIDLEATYAGP+AKAVP
Sbjct:  148 MYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELNEGKVFLRDIIDLEATYAGPDAKAVP 225          
BLAST of mRNA_P-wetherbeei_contig51943.1.1 vs. uniprot
Match: A0A399SMK5_9BACT (RNA polymerase sigma factor RpoD (Fragment) n=1 Tax=Maribellus luteus TaxID=2305463 RepID=A0A399SMK5_9BACT)

HSP 1 Score: 142 bits (358), Expect = 3.170e-41
Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = 0
Query:    1 MYLREMGSVELLSREGEIAIAKRIEAGHEAMIAGLCESPLTFQAIIIWRDELNEGKVLLRDIIDLEATYAGPEAK 75
            MYLREMG+VELLSREGEIAIAKRIEAG EAMIAGLCESPLTFQAIIIWRDELNEGK+ LRDIIDLEATYAGPE+K
Sbjct:   82 MYLREMGTVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELNEGKIFLRDIIDLEATYAGPESK 156          
BLAST of mRNA_P-wetherbeei_contig51943.1.1 vs. uniprot
Match: A0A537PE63_9PROT (RNA polymerase sigma factor RpoD (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537PE63_9PROT)

HSP 1 Score: 146 bits (369), Expect = 4.090e-41
Identity = 74/82 (90.24%), Postives = 77/82 (93.90%), Query Frame = 0
Query:    1 MYLREMGSVELLSREGEIAIAKRIEAGHEAMIAGLCESPLTFQAIIIWRDELNEGKVLLRDIIDLEATYAGPEAKAVPPVVL 82
            MYLREMGSVELLSREGEIAIAKRIEAG EAMIAGLCESPLTFQAIIIWRDELNEGKV LRDIIDLEATYAGP+AK +P  V+
Sbjct:  140 MYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELNEGKVFLRDIIDLEATYAGPDAKVMPAPVI 221          
BLAST of mRNA_P-wetherbeei_contig51943.1.1 vs. uniprot
Match: A0A3S1QUL6_9HYPH (RNA polymerase sigma factor RpoD (Fragment) n=2 Tax=unclassified Mesorhizobium TaxID=325217 RepID=A0A3S1QUL6_9HYPH)

HSP 1 Score: 142 bits (358), Expect = 6.310e-41
Identity = 71/78 (91.03%), Postives = 73/78 (93.59%), Query Frame = 0
Query:    1 MYLREMGSVELLSREGEIAIAKRIEAGHEAMIAGLCESPLTFQAIIIWRDELNEGKVLLRDIIDLEATYAGPEAKAVP 78
            MYLREMGSVELLSREGEIAIAKRIEAG E MIAGLCESPLTFQAIIIWRDELNE K+LLR+IIDLEATYAGPEAK  P
Sbjct:  128 MYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQAIIIWRDELNESKILLREIIDLEATYAGPEAKQAP 205          
BLAST of mRNA_P-wetherbeei_contig51943.1.1 vs. uniprot
Match: A0A212DRE5_9HYPH (Uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCBAU 01583 TaxID=1449348 RepID=A0A212DRE5_9HYPH)

HSP 1 Score: 142 bits (358), Expect = 1.290e-40
Identity = 71/78 (91.03%), Postives = 73/78 (93.59%), Query Frame = 0
Query:    1 MYLREMGSVELLSREGEIAIAKRIEAGHEAMIAGLCESPLTFQAIIIWRDELNEGKVLLRDIIDLEATYAGPEAKAVP 78
            MYLREMGSVELLSREGEIAIAKRIEAG E MIAGLCESPLTFQAIIIWRDELNE K+LLR+IIDLEATYAGPEAK  P
Sbjct:   85 MYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQAIIIWRDELNESKILLREIIDLEATYAGPEAKQAP 162          
BLAST of mRNA_P-wetherbeei_contig51943.1.1 vs. uniprot
Match: A0A1Q5QW68_9BRAD (RNA polymerase sigma factor RpoD (Fragment) n=3 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A1Q5QW68_9BRAD)

HSP 1 Score: 142 bits (359), Expect = 1.330e-40
Identity = 70/76 (92.11%), Postives = 74/76 (97.37%), Query Frame = 0
Query:    1 MYLREMGSVELLSREGEIAIAKRIEAGHEAMIAGLCESPLTFQAIIIWRDELNEGKVLLRDIIDLEATYAGPEAKA 76
            MYLREMG+VELLSREGEIAIAKRIEAG EAMIAGLCESPLTFQAIIIWRDELNEGK+ LRDIIDLEATYAGP+AK+
Sbjct:  138 MYLREMGTVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELNEGKIFLRDIIDLEATYAGPDAKS 213          
BLAST of mRNA_P-wetherbeei_contig51943.1.1 vs. uniprot
Match: A0A4V2HT39_9BRAD (RNA polymerase sigma factor RpoD (Fragment) n=1 Tax=Bradyrhizobium sp. Leo170 TaxID=1571199 RepID=A0A4V2HT39_9BRAD)

HSP 1 Score: 142 bits (358), Expect = 1.330e-40
Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = 0
Query:    1 MYLREMGSVELLSREGEIAIAKRIEAGHEAMIAGLCESPLTFQAIIIWRDELNEGKVLLRDIIDLEATYAGPEAK 75
            MYLREMG+VELLSREGEIAIAKRIEAG EAMIAGLCESPLTFQAIIIWRDELNEGK+ LRDIIDLEATYAGP+AK
Sbjct:  137 MYLREMGTVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELNEGKIFLRDIIDLEATYAGPDAK 211          
BLAST of mRNA_P-wetherbeei_contig51943.1.1 vs. uniprot
Match: B5MEJ3_RHIRD (RNA polymerase sigma factor RpoD (Fragment) n=1 Tax=Rhizobium radiobacter TaxID=358 RepID=B5MEJ3_RHIRD)

HSP 1 Score: 139 bits (351), Expect = 1.340e-40
Identity = 69/78 (88.46%), Postives = 72/78 (92.31%), Query Frame = 0
Query:    1 MYLREMGSVELLSREGEIAIAKRIEAGHEAMIAGLCESPLTFQAIIIWRDELNEGKVLLRDIIDLEATYAGPEAKAVP 78
            MYLREMGSVELLSREGEIAIAKRIEAG E MIAGLCESPLTFQA+IIWRDELNEG  LLR+IIDLE TY+GPEAKA P
Sbjct:   15 MYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQALIIWRDELNEGTTLLREIIDLETTYSGPEAKAAP 92          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51943.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A537SGK0_9PROT3.040e-4289.41RNA polymerase sigma factor RpoD (Fragment) n=1 Ta... [more]
A0A7C4TSH5_9HYPH7.260e-4290.00RNA polymerase sigma factor RpoD n=1 Tax=Hyphomicr... [more]
A0A537MY73_9PROT2.760e-4196.15Uncharacterized protein (Fragment) n=1 Tax=Alphapr... [more]
A0A399SMK5_9BACT3.170e-4193.33RNA polymerase sigma factor RpoD (Fragment) n=1 Ta... [more]
A0A537PE63_9PROT4.090e-4190.24RNA polymerase sigma factor RpoD (Fragment) n=1 Ta... [more]
A0A3S1QUL6_9HYPH6.310e-4191.03RNA polymerase sigma factor RpoD (Fragment) n=2 Ta... [more]
A0A212DRE5_9HYPH1.290e-4091.03Uncharacterized protein n=1 Tax=Mesorhizobium amor... [more]
A0A1Q5QW68_9BRAD1.330e-4092.11RNA polymerase sigma factor RpoD (Fragment) n=3 Ta... [more]
A0A4V2HT39_9BRAD1.330e-4093.33RNA polymerase sigma factor RpoD (Fragment) n=1 Ta... [more]
B5MEJ3_RHIRD1.340e-4088.46RNA polymerase sigma factor RpoD (Fragment) n=1 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009042RNA polymerase sigma-70 region 1.2PFAMPF00140Sigma70_r1_2coord: 1..29
e-value: 7.5E-11
score: 41.8
NoneNo IPR availableGENE3D1.10.601.10RNA Polymerase Primary Sigma Factorcoord: 1..77
e-value: 5.8E-20
score: 74.1
IPR013325RNA polymerase sigma factor, region 2SUPERFAMILY88946Sigma2 domain of RNA polymerase sigma factorscoord: 14..73

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51943contigP-wetherbeei_contig51943:266..532 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51943.1.1mRNA_P-wetherbeei_contig51943.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig51943 266..547 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig51943.1.1 ID=prot_P-wetherbeei_contig51943.1.1|Name=mRNA_P-wetherbeei_contig51943.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=89bp
MYLREMGSVELLSREGEIAIAKRIEAGHEAMIAGLCESPLTFQAIIIWRD
ELNEGKVLLRDIIDLEATYAGPEAKAVPPVVLPAEPVPP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009042RNA_pol_sigma70_r1_2
IPR013325RNA_pol_sigma_r2