mRNA_P-wetherbeei_contig51943.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig51943.1.1
Unique NamemRNA_P-wetherbeei_contig51943.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig51943.1.1 vs. uniprot
Match: A0A537SGK0_9PROT (RNA polymerase sigma factor RpoD (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537SGK0_9PROT)

HSP 1 Score: 157 bits (397), Expect = 1.320e-45
Identity = 80/90 (88.89%), Postives = 85/90 (94.44%), Query Frame = 1 
Query:    1 NDPVRMYLREMGSVELLSREGEIAIAKRIEAGHEAMIAGLCESPLTFQAIIIWRDELNEGKVLLRDIIDLEATYAGPEAKAVPPVVLPAE 270
            +DPVRMYLREMGSVELLSREGEIAIAKRIEAG EAMIAGLCESPLTFQAIIIWRDELNEGKV LRDIIDLEATYAGP+AKA+P  V+ A+
Sbjct:  131 DDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELNEGKVFLRDIIDLEATYAGPDAKAMPGPVIGAD 220
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BLAST of mRNA_P-wetherbeei_contig51943.1.1 vs. uniprot
Match: A0A7C4TSH5_9HYPH (RNA polymerase sigma factor RpoD n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4TSH5_9HYPH)

HSP 1 Score: 162 bits (411), Expect = 5.110e-45
Identity = 85/95 (89.47%), Postives = 87/95 (91.58%), Query Frame = 1 
Query:    1 NDPVRMYLREMGSVELLSREGEIAIAKRIEAGHEAMIAGLCESPLTFQAIIIWRDELNEGKVLLRDIIDLEATYAGPEAKAVPPVVLPAEP-VPP 282
            +DPVRMYLREMGSVELLSREGEIAIAKRIEAGHEAMIAGLCESPLTFQAIIIWRDELN GKVLLRDIIDLEATY GPEAK  PP+V P  P VPP
Sbjct:  123 DDPVRMYLREMGSVELLSREGEIAIAKRIEAGHEAMIAGLCESPLTFQAIIIWRDELNAGKVLLRDIIDLEATYEGPEAKVPPPIVHPGAPHVPP 217
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BLAST of mRNA_P-wetherbeei_contig51943.1.1 vs. uniprot
Match: A0A399SMK5_9BACT (RNA polymerase sigma factor RpoD (Fragment) n=1 Tax=Maribellus luteus TaxID=2305463 RepID=A0A399SMK5_9BACT)

HSP 1 Score: 151 bits (381), Expect = 1.260e-44
Identity = 74/80 (92.50%), Postives = 78/80 (97.50%), Query Frame = 1 
Query:    1 NDPVRMYLREMGSVELLSREGEIAIAKRIEAGHEAMIAGLCESPLTFQAIIIWRDELNEGKVLLRDIIDLEATYAGPEAK 240
            +DPVRMYLREMG+VELLSREGEIAIAKRIEAG EAMIAGLCESPLTFQAIIIWRDELNEGK+ LRDIIDLEATYAGPE+K
Sbjct:   77 DDPVRMYLREMGTVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELNEGKIFLRDIIDLEATYAGPESK 156
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BLAST of mRNA_P-wetherbeei_contig51943.1.1 vs. uniprot
Match: A0A537MY73_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537MY73_9PROT)

HSP 1 Score: 157 bits (398), Expect = 1.380e-44
Identity = 79/83 (95.18%), Postives = 81/83 (97.59%), Query Frame = 1 
Query:    1 NDPVRMYLREMGSVELLSREGEIAIAKRIEAGHEAMIAGLCESPLTFQAIIIWRDELNEGKVLLRDIIDLEATYAGPEAKAVP 249
            +DPVRMYLREMGSVELLSREGEIAIAKRIEAG EAMIAGLCESPLTFQAIIIWRDELNEGKV LRDIIDLEATYAGP+AKAVP
Sbjct:  143 DDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELNEGKVFLRDIIDLEATYAGPDAKAVP 225
[Close]
BLAST of mRNA_P-wetherbeei_contig51943.1.1 vs. uniprot
Match: A0A537PE63_9PROT (RNA polymerase sigma factor RpoD (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537PE63_9PROT)

HSP 1 Score: 155 bits (392), Expect = 1.850e-44
Identity = 78/87 (89.66%), Postives = 82/87 (94.25%), Query Frame = 1 
Query:    1 NDPVRMYLREMGSVELLSREGEIAIAKRIEAGHEAMIAGLCESPLTFQAIIIWRDELNEGKVLLRDIIDLEATYAGPEAKAVPPVVL 261
            +DPVRMYLREMGSVELLSREGEIAIAKRIEAG EAMIAGLCESPLTFQAIIIWRDELNEGKV LRDIIDLEATYAGP+AK +P  V+
Sbjct:  135 DDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELNEGKVFLRDIIDLEATYAGPDAKVMPAPVI 221
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BLAST of mRNA_P-wetherbeei_contig51943.1.1 vs. uniprot
Match: A0A3S1QUL6_9HYPH (RNA polymerase sigma factor RpoD (Fragment) n=2 Tax=unclassified Mesorhizobium TaxID=325217 RepID=A0A3S1QUL6_9HYPH)

HSP 1 Score: 151 bits (381), Expect = 2.540e-44
Identity = 75/83 (90.36%), Postives = 78/83 (93.98%), Query Frame = 1 
Query:    1 NDPVRMYLREMGSVELLSREGEIAIAKRIEAGHEAMIAGLCESPLTFQAIIIWRDELNEGKVLLRDIIDLEATYAGPEAKAVP 249
            +DPVRMYLREMGSVELLSREGEIAIAKRIEAG E MIAGLCESPLTFQAIIIWRDELNE K+LLR+IIDLEATYAGPEAK  P
Sbjct:  123 DDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQAIIIWRDELNESKILLREIIDLEATYAGPEAKQAP 205
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BLAST of mRNA_P-wetherbeei_contig51943.1.1 vs. uniprot
Match: B5MEJ3_RHIRD (RNA polymerase sigma factor RpoD (Fragment) n=1 Tax=Rhizobium radiobacter TaxID=358 RepID=B5MEJ3_RHIRD)

HSP 1 Score: 148 bits (374), Expect = 5.210e-44
Identity = 73/83 (87.95%), Postives = 77/83 (92.77%), Query Frame = 1 
Query:    1 NDPVRMYLREMGSVELLSREGEIAIAKRIEAGHEAMIAGLCESPLTFQAIIIWRDELNEGKVLLRDIIDLEATYAGPEAKAVP 249
            +DPVRMYLREMGSVELLSREGEIAIAKRIEAG E MIAGLCESPLTFQA+IIWRDELNEG  LLR+IIDLE TY+GPEAKA P
Sbjct:   10 DDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQALIIWRDELNEGTTLLREIIDLETTYSGPEAKAAP 92
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BLAST of mRNA_P-wetherbeei_contig51943.1.1 vs. uniprot
Match: A0A212DRE5_9HYPH (Uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCBAU 01583 TaxID=1449348 RepID=A0A212DRE5_9HYPH)

HSP 1 Score: 151 bits (381), Expect = 5.320e-44
Identity = 75/83 (90.36%), Postives = 78/83 (93.98%), Query Frame = 1 
Query:    1 NDPVRMYLREMGSVELLSREGEIAIAKRIEAGHEAMIAGLCESPLTFQAIIIWRDELNEGKVLLRDIIDLEATYAGPEAKAVP 249
            +DPVRMYLREMGSVELLSREGEIAIAKRIEAG E MIAGLCESPLTFQAIIIWRDELNE K+LLR+IIDLEATYAGPEAK  P
Sbjct:   80 DDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQAIIIWRDELNESKILLREIIDLEATYAGPEAKQAP 162
[Close]
BLAST of mRNA_P-wetherbeei_contig51943.1.1 vs. uniprot
Match: A0A4V2HT39_9BRAD (RNA polymerase sigma factor RpoD (Fragment) n=1 Tax=Bradyrhizobium sp. Leo170 TaxID=1571199 RepID=A0A4V2HT39_9BRAD)

HSP 1 Score: 151 bits (381), Expect = 5.470e-44
Identity = 74/80 (92.50%), Postives = 78/80 (97.50%), Query Frame = 1 
Query:    1 NDPVRMYLREMGSVELLSREGEIAIAKRIEAGHEAMIAGLCESPLTFQAIIIWRDELNEGKVLLRDIIDLEATYAGPEAK 240
            +DPVRMYLREMG+VELLSREGEIAIAKRIEAG EAMIAGLCESPLTFQAIIIWRDELNEGK+ LRDIIDLEATYAGP+AK
Sbjct:  132 DDPVRMYLREMGTVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELNEGKIFLRDIIDLEATYAGPDAK 211
[Close]
BLAST of mRNA_P-wetherbeei_contig51943.1.1 vs. uniprot
Match: A0A1Q5QW68_9BRAD (RNA polymerase sigma factor RpoD (Fragment) n=3 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A1Q5QW68_9BRAD)

HSP 1 Score: 151 bits (382), Expect = 5.520e-44
Identity = 74/81 (91.36%), Postives = 79/81 (97.53%), Query Frame = 1 
Query:    1 NDPVRMYLREMGSVELLSREGEIAIAKRIEAGHEAMIAGLCESPLTFQAIIIWRDELNEGKVLLRDIIDLEATYAGPEAKA 243
            +DPVRMYLREMG+VELLSREGEIAIAKRIEAG EAMIAGLCESPLTFQAIIIWRDELNEGK+ LRDIIDLEATYAGP+AK+
Sbjct:  133 DDPVRMYLREMGTVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELNEGKIFLRDIIDLEATYAGPDAKS 213
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig51943.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A537SGK0_9PROT1.320e-4588.89RNA polymerase sigma factor RpoD (Fragment) n=1 Ta... [more]
A0A7C4TSH5_9HYPH5.110e-4589.47RNA polymerase sigma factor RpoD n=1 Tax=Hyphomicr... [more]
A0A399SMK5_9BACT1.260e-4492.50RNA polymerase sigma factor RpoD (Fragment) n=1 Ta... [more]
A0A537MY73_9PROT1.380e-4495.18Uncharacterized protein (Fragment) n=1 Tax=Alphapr... [more]
A0A537PE63_9PROT1.850e-4489.66RNA polymerase sigma factor RpoD (Fragment) n=1 Ta... [more]
A0A3S1QUL6_9HYPH2.540e-4490.36RNA polymerase sigma factor RpoD (Fragment) n=2 Ta... [more]
B5MEJ3_RHIRD5.210e-4487.95RNA polymerase sigma factor RpoD (Fragment) n=1 Ta... [more]
A0A212DRE5_9HYPH5.320e-4490.36Uncharacterized protein n=1 Tax=Mesorhizobium amor... [more]
A0A4V2HT39_9BRAD5.470e-4492.50RNA polymerase sigma factor RpoD (Fragment) n=1 Ta... [more]
A0A1Q5QW68_9BRAD5.520e-4491.36RNA polymerase sigma factor RpoD (Fragment) n=3 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig51943contigP-wetherbeei_contig51943:266..547 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog991905.SL003B_1266
Preferred namerpoD
PFAMsSigma70_ner,Sigma70_r1_1,Sigma70_r1_2,Sigma70_r2,Sigma70_r3,Sigma70_r4
Model size282
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03086
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.99e-40
EggNOG OGsCOG0568@1|root,COG0568@2|Bacteria,1MVNJ@1224|Proteobacteria,2TS6C@28211|Alphaproteobacteria,4BPAY@82117|unclassified Alphaproteobacteria
DescriptionSigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth
Cds size267
COG categoryK
BRITEko00000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186779.298006-CDS-P-wetherbeei_contig51943:265..5321683186779.298006-CDS-P-wetherbeei_contig51943:265..532Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig51943 266..532 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186779.3075452-UTR-P-wetherbeei_contig51943:532..5471683186779.3075452-UTR-P-wetherbeei_contig51943:532..547Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig51943 533..547 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig51943.1.1prot_P-wetherbeei_contig51943.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig51943 266..532 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig51943.1.1

>prot_P-wetherbeei_contig51943.1.1 ID=prot_P-wetherbeei_contig51943.1.1|Name=mRNA_P-wetherbeei_contig51943.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=89bp
MYLREMGSVELLSREGEIAIAKRIEAGHEAMIAGLCESPLTFQAIIIWRD
ELNEGKVLLRDIIDLEATYAGPEAKAVPPVVLPAEPVPP
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mRNA from alignment at P-wetherbeei_contig51943:266..547-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig51943.1.1 ID=mRNA_P-wetherbeei_contig51943.1.1|Name=mRNA_P-wetherbeei_contig51943.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig51943:266..547- (Phaeothamnion wetherbeei SAG_119_79)
AACGACCCCGTCCGCATGTATCTGCGCGAGATGGGATCGGTCGAGCTGCT
GTCGCGCGAGGGCGAGATCGCAATCGCCAAGCGCATCGAGGCCGGTCACG
AGGCGATGATCGCGGGACTTTGCGAGAGCCCGTTGACGTTCCAGGCAATC
ATCATCTGGCGCGACGAACTCAACGAAGGCAAGGTTCTGCTGCGCGACAT
CATCGATCTCGAGGCGACCTACGCAGGTCCTGAGGCGAAAGCCGTGCCAC
CCGTCGTGCTCCCTGCCGAGCCCGTGCCGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig51943:266..547-

>mRNA_P-wetherbeei_contig51943.1.1 ID=mRNA_P-wetherbeei_contig51943.1.1|Name=mRNA_P-wetherbeei_contig51943.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=267bp|location=Sequence derived from alignment at P-wetherbeei_contig51943:266..547- (Phaeothamnion wetherbeei SAG_119_79)
ATGTATCTGCGCGAGATGGGATCGGTCGAGCTGCTGTCGCGCGAGGGCGA
GATCGCAATCGCCAAGCGCATCGAGGCCGGTCACGAGGCGATGATCGCGG
GACTTTGCGAGAGCCCGTTGACGTTCCAGGCAATCATCATCTGGCGCGAC
GAACTCAACGAAGGCAAGGTTCTGCTGCGCGACATCATCGATCTCGAGGC
GACCTACGCAGGTCCTGAGGCGAAAGCCGTGCCACCCGTCGTGCTCCCTG
CCGAGCCCGTGCCGCCG
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