mRNA_P-wetherbeei_contig12169.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12169.1.1
Unique NamemRNA_P-wetherbeei_contig12169.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12169.1.1 vs. uniprot
Match: A0A3B9BJJ5_9PROT (Uncharacterized protein n=3 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3B9BJJ5_9PROT)

HSP 1 Score: 193 bits (490), Expect = 2.260e-61
Identity = 85/126 (67.46%), Postives = 96/126 (76.19%), Query Frame = 1
Query:    4 LDRALIHFTLGSQISVGILLLEDGFYVPGMLQAAAAFFDPTSPGRCVSGFCAVHHKLVADIVPPPDADWPQWGFLQWDHYFGWNSGAYLVDLPHMRVRQYHPVSVHRDGRPVQCDLSRTPRILHVV 381
            +DRALIHFTLG +ISVGI L + G+Y P +L  AA   DP SPGRCV+GFCAVH  LV D+V PP   W  WGF +WD YFGWN+G YLVDLP M VRQYHPVS+HR GR V+CDLSRTPR L VV
Sbjct:    1 MDRALIHFTLGREISVGIYLEQMGYYTPDLLHKAAPRLDPASPGRCVAGFCAVHQPLVTDLVAPPPVGWDGWGFEEWDAYFGWNNGTYLVDLPQMAVRQYHPVSIHRRGRTVRCDLSRTPRALRVV 126          
BLAST of mRNA_P-wetherbeei_contig12169.1.1 vs. uniprot
Match: A0A352KFG2_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A352KFG2_9PROT)

HSP 1 Score: 135 bits (340), Expect = 4.420e-39
Identity = 56/82 (68.29%), Postives = 62/82 (75.61%), Query Frame = 1
Query:  133 GRCVSGFCAVHHKLVADIVPPPDADWPQWGFLQWDHYFGWNSGAYLVDLPHMRVRQYHPVSVHRDGRPVQCDLSRTPRILHV 378
            GRCV+GFC  H  LV D+V PP   W  WGF +WD YFGWN+G YLVDLP M VRQYHPVS+HR GR V+CDLSRTPR L V
Sbjct:    8 GRCVAGFCPGHQPLVTDLVAPPPVGWDGWGFEEWDAYFGWNNGTYLVDLPQMAVRQYHPVSIHRRGRTVRCDLSRTPRALRV 89          
BLAST of mRNA_P-wetherbeei_contig12169.1.1 vs. uniprot
Match: A0A2D8S042_9HYPH (Uncharacterized protein n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2D8S042_9HYPH)

HSP 1 Score: 125 bits (315), Expect = 9.840e-35
Identity = 63/128 (49.22%), Postives = 78/128 (60.94%), Query Frame = 1
Query:    1 MLDRALIHFTLGSQISVGILLLEDGFYVPGMLQAAAAFFDPTSPGRCVSGFCAVHHKLVADIVPPPDADWPQWGFLQWDHYFGWNSGAYLVDLPHMRVRQYHPVSVHRDGRPVQCDLSRTPRILHVVK 384
            M D ALIHF LG +IS G+LL ++G   P +L  AA + DP  PGRCV GFCA H  LV D+V PP   W  WGF +WD++FG  +G +LVDL  ++V QY   S       V CDLS  PR L  V+
Sbjct:    1 MRDEALIHFHLGHRISAGLLLPQNGGAAPELLSEAAPWLDPRDPGRCVVGFCAAHPDLVGDVVGPPPDGWRDWGFNEWDNWFGRINGVFLVDLQSLKVTQYPLYSCA--PHIVPCDLSSLPRRLVPVE 126          
BLAST of mRNA_P-wetherbeei_contig12169.1.1 vs. uniprot
Match: A0A2D4VGH9_9HYPH (Uncharacterized protein n=2 Tax=Parvibaculum TaxID=256616 RepID=A0A2D4VGH9_9HYPH)

HSP 1 Score: 117 bits (292), Expect = 3.410e-31
Identity = 58/128 (45.31%), Postives = 74/128 (57.81%), Query Frame = 1
Query:    1 MLDRALIHFTLGSQISVGILLLEDGFYVPGMLQAAAAFFDPTSPGRCVSGFCAVHHKLVADIVPPPDADWPQWGFLQWDHYFGWNSGAYLVDLPHMRVRQYHPVSVHRDGRPVQCDLSRTPRILHVVK 384
            M D +LIHF  G +IS G+ L  +G   P ++  AA + DP  PGRCV GFCA H  +V D+   P   W  WGF +WD +FG  +G +LVDL  +RV QY   S    G+ V CDLS  PR L  V+
Sbjct:    1 MRDESLIHFHHGRRISAGLHLPRNGAAAPELIAEAAPWLDPRDPGRCVVGFCAAHPDMVGDVTNAPPPGWENWGFNEWDQWFGRINGVFLVDLETLRVVQYPLYSC--GGQTVPCDLSGLPRRLVPVE 126          
BLAST of mRNA_P-wetherbeei_contig12169.1.1 vs. uniprot
Match: A0A081BAE4_9HYPH (Conserved protein n=1 Tax=Tepidicaulis marinus TaxID=1333998 RepID=A0A081BAE4_9HYPH)

HSP 1 Score: 111 bits (277), Expect = 5.710e-29
Identity = 55/121 (45.45%), Postives = 67/121 (55.37%), Query Frame = 1
Query:    1 MLDRALIHFTLGSQISVGILLLEDGFYVPGMLQAAAAFFDPTSPGRCVSGFCAVHHKLVADIVPPPDADWPQWGFLQWDHYFGWNSGAYLVDLPHMRVRQYHPVSVHRDGRPVQCDLSRTP 363
            M D ALIHF  G  IS G+ L  +G   P ++  AA + DP  PGRCV GFC+ H   V DI   P   W  WGF +WD +FG  +G YLVDL  ++V+QY   S       V CDLS  P
Sbjct:    1 MRDEALIHFHYGRHISAGVHLAHEGAAAPDLVSEAAPYLDPKHPGRCVVGFCSAHPGAVDDITNAPPRGWENWGFGEWDDWFGRINGVYLVDLRSLKVKQYPLYSCA--PLIVPCDLSGLP 119          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12169.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A3B9BJJ5_9PROT2.260e-6167.46Uncharacterized protein n=3 Tax=Alphaproteobacteri... [more]
A0A352KFG2_9PROT4.420e-3968.29Uncharacterized protein (Fragment) n=1 Tax=Alphapr... [more]
A0A2D8S042_9HYPH9.840e-3549.22Uncharacterized protein n=3 Tax=Alphaproteobacteri... [more]
A0A2D4VGH9_9HYPH3.410e-3145.31Uncharacterized protein n=2 Tax=Parvibaculum TaxID... [more]
A0A081BAE4_9HYPH5.710e-2945.45Conserved protein n=1 Tax=Tepidicaulis marinus Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12169contigP-wetherbeei_contig12169:170..556 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog402881.Plav_0667
Model size387
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.05e-33
EggNOG OGs2F2Y0@1|root,33VTI@2|Bacteria,1NW5P@1224|Proteobacteria,2US85@28211|Alphaproteobacteria
Cds size387
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185939.9277282-CDS-P-wetherbeei_contig12169:169..5561683185939.9277282-CDS-P-wetherbeei_contig12169:169..556Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12169 170..556 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12169.1.1prot_P-wetherbeei_contig12169.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12169 170..556 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12169.1.1

>prot_P-wetherbeei_contig12169.1.1 ID=prot_P-wetherbeei_contig12169.1.1|Name=mRNA_P-wetherbeei_contig12169.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=129bp
MLDRALIHFTLGSQISVGILLLEDGFYVPGMLQAAAAFFDPTSPGRCVSG
FCAVHHKLVADIVPPPDADWPQWGFLQWDHYFGWNSGAYLVDLPHMRVRQ
YHPVSVHRDGRPVQCDLSRTPRILHVVK*
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mRNA from alignment at P-wetherbeei_contig12169:170..556-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12169.1.1 ID=mRNA_P-wetherbeei_contig12169.1.1|Name=mRNA_P-wetherbeei_contig12169.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig12169:170..556- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGGACCGGGCTCTTATTCATTTTACGCTTGGATCGCAAATTTCCGT TGGCATCCTGTTGCTTGAAGATGGATTTTACGTGCCGGGCATGTTGCAGG CGGCCGCCGCTTTTTTTGATCCCACAAGTCCGGGGCGCTGTGTTTCCGGG TTTTGCGCTGTGCATCATAAACTGGTCGCGGATATTGTGCCGCCCCCGGA TGCAGACTGGCCGCAATGGGGCTTTCTTCAGTGGGACCATTATTTTGGCT GGAATAGCGGCGCCTATCTGGTTGATTTGCCGCATATGCGCGTGCGGCAA TATCATCCTGTGTCCGTGCATCGCGATGGCAGGCCCGTGCAATGTGATCT GTCGCGGACACCGCGAATTTTGCATGTGGTGAAGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12169:170..556-

>mRNA_P-wetherbeei_contig12169.1.1 ID=mRNA_P-wetherbeei_contig12169.1.1|Name=mRNA_P-wetherbeei_contig12169.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig12169:170..556- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGGACCGGGCTCTTATTCATTTTACGCTTGGATCGCAAATTTCCGT
TGGCATCCTGTTGCTTGAAGATGGATTTTACGTGCCGGGCATGTTGCAGG
CGGCCGCCGCTTTTTTTGATCCCACAAGTCCGGGGCGCTGTGTTTCCGGG
TTTTGCGCTGTGCATCATAAACTGGTCGCGGATATTGTGCCGCCCCCGGA
TGCAGACTGGCCGCAATGGGGCTTTCTTCAGTGGGACCATTATTTTGGCT
GGAATAGCGGCGCCTATCTGGTTGATTTGCCGCATATGCGCGTGCGGCAA
TATCATCCTGTGTCCGTGCATCGCGATGGCAGGCCCGTGCAATGTGATCT
GTCGCGGACACCGCGAATTTTGCATGTGGTGAAGTAG
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