mRNA_P-wetherbeei_contig11980.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11980.1.1
Unique NamemRNA_P-wetherbeei_contig11980.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11980.1.1 vs. uniprot
Match: A0A7C4XNS3_9HYPH (DsbC domain-containing protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4XNS3_9HYPH)

HSP 1 Score: 222 bits (565), Expect = 3.490e-68
Identity = 126/266 (47.37%), Postives = 165/266 (62.03%), Query Frame = 1
Query:   52 AQANTSAGPWVKGFNSSVRLIAGSLPPGDASGKPKLLAGVEMRLADGWKTYWRHPGDDGGLPPSFGWSGSKNLRNAVVRYPAPHRIKGLVGTSLGYTTSVIFPVEIETDNVSKPVELALDFEFGICREICVPAEAKLKLVIPP-TLAVMPPELAASYQKVPQ-PA---PNAGAILKSAKAILTGATPAITLDLAAGAAGGKLDLFAEVVEGAFLPVAQKSGEPAQGIQRFRIDLKGVEEAPQLSGKTLRLTIMGQGAASEVTWAIK 834
            A A+  A PW  G  SS RL+ GS P  D S   +LLAGVE+RLA+GWKTYWR PGD GG+PP F W+GS NL  A V YPAP R+    G S+GY  +VIFPVE+   + ++PV L L FE+GICR+ICVPAEA+ ++ I P  +  +  ELA    +VP+ PA   P A A++ +A+A+LTG+ P +T ++A        DLF E  +G +LP+A K GE A     F IDL    E  +L G  LRLTI+  G   E TW ++
Sbjct:   23 AVASGLATPWQHGHGSSARLLVGSSPEADDS--VRLLAGVEVRLAEGWKTYWRQPGDSGGIPPRFDWTGSVNLSGARVLYPAPERLSDPTGESIGYKKNVIFPVELTPADPARPVLLKLAFEYGICRDICVPAEARFEVTIAPGAVTGLQAELARMIARVPRAPASIGPGAPALV-AARAVLTGSAPRLTFEVAVPGGAADADLFVEAADGLYLPMAAKVGEAAPDRALFSIDLSRGVEIDRLRGAALRLTIVAAGGMVETTWKVE 285          
BLAST of mRNA_P-wetherbeei_contig11980.1.1 vs. uniprot
Match: A0A1E3VWC3_9HYPH (DsbC domain-containing protein n=2 Tax=Methyloceanibacter superfactus TaxID=1774969 RepID=A0A1E3VWC3_9HYPH)

HSP 1 Score: 196 bits (499), Expect = 3.780e-58
Identity = 110/261 (42.15%), Postives = 155/261 (59.39%), Query Frame = 1
Query:   58 ANTSAGPWVKGFNSSVRLIAGSLPPGDASGKPKLLAGVEMRLADGWKTYWRHPGDDGGLPPSFGWSGSKNLRNAVVRYPAPHRIKGLVGTSLGYTTSVIFPVEIETDNVSKPVELALDFEFGICREICVPAEAKLKLVIPPTL----AVMPPELAASYQKVPQPAP-NAGAILKSAKAILTGATPAITLDLAAGAAGGKLDLFAEVVEGAFLPVAQKSGEPAQGIQRFRIDLKGVEEAPQLSGKTLRLTIMGQGAASEVTW 825
            A+T   PWV   NS VRL++G++      GKP + AGV++R+A GWKTYWR+PGD G +PPSF WSGSKNL++A V YPAPHR     GT++GY   V+FPV+I  ++  +PVEL LDFE+G+C+++C+P EA L L +PP L    A++   L  +  +VP+ A  +A   +    A L G  PA+ ++          DLF E  E  F+PV +  G  A G QRF +      EA  + GK L LT++    ++   W
Sbjct:   38 ASTGQSPWVDQSNSKVRLVSGTIM---TDGKPAIFAGVQLRMAPGWKTYWRNPGDSG-VPPSFDWSGSKNLKSAEVLYPAPHRFADANGTAIGYGDEVVFPVKITPEHDGEPVELKLDFEYGLCKDLCIPNEAALDLALPPDLGKGDAML---LETALARVPRSAQGDALPKITHIAATLGGPAPALEVEATFPPGATGTDLFVESPE-VFVPVPKALGPLADGKQRFAVAFMSATEAAAIKGKALTLTLVSDEGSTATVW 290          
BLAST of mRNA_P-wetherbeei_contig11980.1.1 vs. uniprot
Match: UPI0009319D12 (hypothetical protein n=1 Tax=Hyphomicrobium sp. NDB2Meth4 TaxID=1892846 RepID=UPI0009319D12)

HSP 1 Score: 194 bits (494), Expect = 1.190e-57
Identity = 99/252 (39.29%), Postives = 149/252 (59.13%), Query Frame = 1
Query:   70 AGPWVKGFNSSVRLIAGSLPPGDASGKPKLLAGVEMRLADGWKTYWRHPGDDGGLPPSFGWSGSKNLRNAVVRYPAPHRIKGLVGTSLGYTTSVIFPVEIETDNVSKPVELALDFEFGICREICVPAEAKLKLVIPPTLAVMPPELAASYQKVPQPAP---NAGAILKSAKAILTGATPAITLDLAAGAAGGKLDLFAEVVEGAFLPVAQKSGEPAQGIQRFRIDLKGVEEAPQLSGKTLRLTIMGQGAASE 816
            A PWV G +S VRL+ G+            L G+E+ L +GWKTYWR PG+ GG+PP+F WSGSKNL +A V YPAP R     G ++GY  +++ PV ++ ++ +KP+E+ L  ++G+C++IC+PA+AKL+L +PP    MP EL  +  K+P PA     A  I+K   A L+G  P ITLD+        +D F E  +G ++P+ +K+ +  +G   F +DL    + P L GK +  T++     SE
Sbjct:   28 ASPWVDGHSSRVRLVGGAS-----------LVGIEIELPEGWKTYWRTPGEAGGVPPAFDWSGSKNLASAQVLYPAPKRFSDSSGDTVGYKGTIVLPVRLKAEDPAKPIEVQLGIDYGVCKDICIPAQAKLELTLPPGTP-MPEELIDAMTKIPAPAEARREADPIVKKVAAELSGPKPHITLDVELPGGAEHVDAFVEAPDGVYVPLPKKTSDDGKGQVTFEVDLSRDVDIPALKGKEMTATVVSDKGQSE 267          
BLAST of mRNA_P-wetherbeei_contig11980.1.1 vs. uniprot
Match: A0A2W4TAF5_9PROT (DsbC domain-containing protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4TAF5_9PROT)

HSP 1 Score: 195 bits (496), Expect = 1.690e-57
Identity = 115/266 (43.23%), Postives = 157/266 (59.02%), Query Frame = 1
Query:   52 AQANTSAGPWVKGFNSSVRLIAGSLPPGDASGK-PKLLAGVEMRLADGWKTYWRHPGDDGGLPPSFGWSGSKNLRNAVVRYPAPHRIKGLVGTSLGYTTSVIFPVEIETDNVSKPVELALDFEFGICREICVPAEAKLKLVIPPTLAVM-PPELAASYQKVPQPAPN----AGAILKSAKAILTGATPAITLDLAAGAAGGKLDLFAEVVEGAFLPVAQKSGEPAQGIQRFRIDLKGVEEAPQLSGKTLRLTIMGQGAASEVTWAI 831
            A+A+  A PWV+   + VRL+AGS+     SG+ P +LAG+ + L  GWKTYWR PGD GGLPP F WSGS NL  A V YPAP R K  VG S+GY+ +V+FP+E+   + +KPVEL L+  +GICR+ICVPAEA+L L +P    V   PE+A++   VP+  P         L S++A L G  P + L      +    D+F E  +GA++P+  K  E    I  F +DL   E   +L GKTLR+T++     +E  W I
Sbjct:   48 ARASPLATPWVEAHGAKVRLVAGSVA--SKSGESPAVLAGLAISLQPGWKTYWRSPGDAGGLPPHFNWSGSVNLSEAKVLYPAPKRFKDSVGDSVGYSGAVVFPIEVRPKDPAKPVELRLNLSYGICRDICVPAEAQLALTLPANATVPGSPEIASALAAVPR-GPGERRPGDPELVSSRAQLEGDRPKLMLQARFPGSAASADMFIEETDGAYVPLPTKVAE-RDDIVSFEVDLSEAEPK-ELRGKTLRITMVSDAGQAEAYWKI 308          
BLAST of mRNA_P-wetherbeei_contig11980.1.1 vs. uniprot
Match: A0A3N5N6U3_9HYPH (DsbC domain-containing protein n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A3N5N6U3_9HYPH)

HSP 1 Score: 191 bits (486), Expect = 2.930e-56
Identity = 110/266 (41.35%), Postives = 153/266 (57.52%), Query Frame = 1
Query:   49 AAQANTSAGPWVKGFNSSVRLIAGSLPPGDASGKPKLLAGVEMRLADGWKTYWRHPGDDGGLPPSFGWSGSKNLRNAVVRYPAPHRIKGLVGTSLGYTTSVIFPVEIETDNVSKPVELALDFEFGICREICVPAEAKLKLVIPPTL--AVMPPELAASYQKVPQPAP---NAGAILKSAKAILTGATPAITLDLAAGAAGGKLDLFAEVVEGAFLPVAQKSGEPAQGIQRFRIDLKGVEEAPQLSGKTLRLTIMGQGAASEVTWAI 831
            AA+   +A PWV+   + VRL+AG+    D +GK   LAGVE+ +A GWKTYWR+PG+  G+PP+F WSGS N  +  V YPAP R+       +GY +SV+FPV +   + S+ VEL L  EF +CREIC+PA+A + L +PP L      P +AA+  +VP+  P    +  +L    A L G  P + ++    A     DLF E  +G FLP+AQK    +    RF +DL     AP+L GK L LT++    ASEV W +
Sbjct:   26 AAEPVAAATPWVEAQAARVRLVAGA--DADRAGK-SFLAGVEIVMAQGWKTYWRNPGE-AGVPPNFDWSGSTNTASIKVTYPAPIRLVDPAAEMIGYKSSVLFPVAVSPQDPSQAVELRLALEFAVCREICIPAQASMHLTLPPALLKGAPTPLVAAAQARVPRSPPARRGSDPVLLGVTAKLEGPDPVLQIEAKFPAGSAGADLFVEAPDGIFLPMAQKLPGESDATVRFMVDLSRSGVAPELKGKELTLTLVSDAGASEVAWTL 287          
BLAST of mRNA_P-wetherbeei_contig11980.1.1 vs. uniprot
Match: UPI00199413FE (Uncharacterized protein n=1 Tax=Methyloceanibacter sp. TaxID=1965321 RepID=UPI00199413FE)

HSP 1 Score: 190 bits (482), Expect = 1.200e-55
Identity = 111/274 (40.51%), Postives = 160/274 (58.39%), Query Frame = 1
Query:   16 AIFAVAPASHVAAQANTSAGPWVKGFNSSVRLIAGSLPPGDASGKPKLLAGVEMRLADGWKTYWRHPGDDGGLPPSFGWSGSKNLRNAVVRYPAPHRIKGLVGTSLGYTTSVIFPVEIETDNVSKPVELALDFEFGICREICVPAEAKLKLVIPPTLAVMPPELAASY-QKVPQPA-PNAGAILKSAKAILTGATPAITLDLA--AGAAGGKLDLFAEVVEGAFLPVAQKSGEPAQGIQRFRIDLKGVEEAPQLSGKTLRLTIMGQGAASEVTW 825
            AI  VA AS   A A  SA PW+   NS VRL++G++   D  G P LLAGV++R+  GWKTYW++PGD G +PPSF WSGSKNL++A V YPAPHR     GT++GY   V+FPV++  +   +P+EL + F +G+C+++C+P +  L L + P        L  S+  +VP+PA P A   +   +A L G  P + +D     GA G   DLF +  +  F+P+ +  G  A G QRF +      E+  + GKTL LT++    ++E  W
Sbjct:   21 AILGVAAASAALAAA-ASASPWIASTNSKVRLVSGTV---DLDGTPTLLAGVQLRMNSGWKTYWKNPGDSG-VPPSFDWSGSKNLKHAEVLYPAPHRFADANGTAIGYDDEVVFPVKLTPEKEGEPIELKVAFAYGLCKDLCIPNDVSLGLALAPNAGKGDALLLESFLTRVPKPAKPGALPEVSGVEAKLDGEAPQLLVDAVFPPGATGN--DLFVDAGD-VFVPMPRPLGPLADGEQRFAVIFASPSESAAVKGKTLALTLVSDQGSTETKW 286          
BLAST of mRNA_P-wetherbeei_contig11980.1.1 vs. uniprot
Match: UPI0019A9D5F8 (Uncharacterized protein n=1 Tax=Methyloceanibacter sp. TaxID=1965321 RepID=UPI0019A9D5F8)

HSP 1 Score: 186 bits (473), Expect = 2.330e-54
Identity = 106/272 (38.97%), Postives = 154/272 (56.62%), Query Frame = 1
Query:   40 SHVAAQANTSAGPWVKGFNSSVRLIAGSLPPGDASGKPKLLAGVEMRLADGWKTYWRHPGDDGGLPPSFGWSGSKNLRNAVVRYPAPHRIKGLVGTSLGYTTSVIFPVEIETDNVSKPVELALDFEFGICREICVPAEAKLKLVIPPTLAVMPPELAASY-QKVPQPA-----PNAGAILKSAKAILTGATPAITLDLA--AGAAGGKLDLFAEVVEGA--FLPVAQKSGEPAQGIQRFRIDLKGVEEAPQLSGKTLRLTIMGQGAASEVTW 825
            S  A  A  SA PW    NS VRL++G++   D  G+P LLAG+++RL  GWKTYWR+PGD G +PP F W+GSKNL+ A V YPAPHR     G+++GY   V+FPV++  +   +P+EL L F +G+C+++C+P +  L L +P  +      L  S+  +VP PA     P+ G +    +  L G TP + +D     GA G  L     +++G   F+P+    G P  G QRF +      EA  + GKTLRLT++    ++E  W
Sbjct:   23 SGAALAAGASASPWTVSTNSKVRLVSGTV---DDGGRPALLAGIQLRLDPGWKTYWRNPGDSG-VPPRFDWAGSKNLKEAEVLYPAPHRFADAGGSAIGYDGEVLFPVKLTPERDGEPIELKLAFAYGLCKDLCIPNDVSLSLAVPANVGKGDALLLDSFVARVPLPARPGLLPSVGGV----QVKLDGETPGLVVDAVFPPGATGTDL-----LIDGGDVFVPLPAPLGAPGDGKQRFAVTFASPSEATAIRGKTLRLTLVSDQGSTETMW 281          
BLAST of mRNA_P-wetherbeei_contig11980.1.1 vs. uniprot
Match: A0A101VMM0_9PROT (PLAT domain-containing protein n=1 Tax=Alphaproteobacteria bacterium BRH_c36 TaxID=1734406 RepID=A0A101VMM0_9PROT)

HSP 1 Score: 186 bits (472), Expect = 5.780e-54
Identity = 115/271 (42.44%), Postives = 152/271 (56.09%), Query Frame = 1
Query:   52 AQANTSAGPWVKGFNSSVRLIAGSLPPGDASGKPK-LLAGVEMRLADGWKTYWRHPGDDGGLPPSFGWSGSKNLRNAVVRYPAPHRIKGLVGTSLGYTTSVIFPVEIETDNVSKPVELALDFEFGICREICVPAEAKLKLVIPPTLAVMPPELAASYQKVPQPAPNAGAI-------LKSAKAILTGATPAITLDLAAGAAGGKLDLFAEVVEGAFLPVAQK--SGEPAQGIQRFRIDLKGVEEAPQLSGKTLRLTIMGQGAASEVTWAIK 834
            A A   A  WV+G  S VR++AG       SG P+ ++AGVE+ L   WKTYWR PG+ GG+PP F WS SKN+ +A V +PAP R+    G ++GY  +V+ PV +   + SKPVELALDF FG+CR+IC+PAEA L L +P   A   PE     +K    AP   A        L   + +LTG  P + LD+  GA   K D+FAE   G FLP+ ++      A G  RF IDL    +   L GKT+RLT++G    SE    +K
Sbjct:   38 AAAGDLASDWVEGHASRVRMLAGRDSQA-VSGLPEAIIAGVEIDLQPAWKTYWRFPGEAGGVPPEFDWSRSKNVADAKVVFPAPKRLTDATGDTIGYKDNVVLPVIVTPADASKPVELALDFTFGVCRDICIPAEASLLLDVPQLGAQALPE---GIKKALDHAPRKRAQKQPGDPELTGHEIVLTGKAPHVVLDVDFGAKPEKGDVFAEAPGGLFLPMPRRVAGAGTAGGSSRFEIDLSQTLDLDDLKGKTIRLTLVGAEGQSERELVLK 304          
BLAST of mRNA_P-wetherbeei_contig11980.1.1 vs. uniprot
Match: A0A3D3AZR9_9HYPH (DsbC domain-containing protein n=3 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A3D3AZR9_9HYPH)

HSP 1 Score: 185 bits (470), Expect = 8.460e-54
Identity = 101/257 (39.30%), Postives = 151/257 (58.75%), Query Frame = 1
Query:   67 SAGPWVKGFNSSVRLIAGSLPPGDASGKPKLLAGVEMRLADGWKTYWRHPGDDGGLPPSFGWSGSKNLRNAVVRYPAPHRIKGLVGTSLGYTTSVIFPVEIETDNVSKPVELALDFEFGICREICVPAEAKLKLVIPPTLAVMPPELA---ASYQKVPQPA-PNAGAILKSAKAILTGATPAITLDLAAGAAGGKLDLFAEVVEGAFLPVAQKSGEPAQGIQRFRIDLKGVEEAPQLSGKTLRLTIMGQGAASEVTW 825
            S  PWV   NS VRL++G+L   D  GKP L+AGV++R+  GWKTYW++PGD G +PP+F WSGS NL++A V YPAPHRI    GT++GY   ++FPV++  +   +P+EL L   FG+C+++C+P +  L L +P   A    + A   ++  +VP+PA P A   +++  A + GA P + +D          DLF +  E  ++PV       A G QRF +      EA  + GK+L LT++  G +S+  W
Sbjct:   39 STSPWVASTNSKVRLVSGAL---DLDGKPTLVAGVQLRMDGGWKTYWKNPGDSG-VPPTFDWSGSNNLKHAEVLYPAPHRIADANGTAIGYDDEIVFPVKLTPEREGEPIELKLALNFGLCKDLCIPNDVSLALELPADAASHRGDAALLESALARVPKPAAPEALPRVEAVTANVDGAKPELLIDALFPPDATGTDLFIDGGE-TYVPVPMPVRPLAGGKQRFAVAFASPGEAASIKGKSLTLTLVSDGGSSDTAW 290          
BLAST of mRNA_P-wetherbeei_contig11980.1.1 vs. uniprot
Match: A0A6I0E7U5_HYPSQ (DsbC domain-containing protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A6I0E7U5_HYPSQ)

HSP 1 Score: 183 bits (465), Expect = 2.760e-53
Identity = 102/259 (39.38%), Postives = 142/259 (54.83%), Query Frame = 1
Query:   70 AGPWVKGFNSSVRLIAGSLPPGDASGKPKLLAGVEMRLADGWKTYWRHPGDDGGLPPSFGWSGSKNLRNAVVRYPAPHRIKGLVGTSLGYTTSVIFPVEIETDNVSKPVELALDFEFGICREICVPAEAKLKLVIPPTLAVMPPELAASYQKVPQPAPNA----GAILKSAKAILTGATPAITLDLAAGAAGGKLDLFAEVVEGAFLPVAQKSGEPAQGIQRFRIDLKGVEEAPQLSGKTLRLTIMGQGAASEVTWAIK 834
            A  WV G  S  RLI+G             +AGVE+ LA+GWKTYWR PG+ GG+ PSF WS S NL NA V YPAP R     G ++GY  SV+FPV ++  + SKP+++ L F +G+CR+IC+PA+A L L +PP  A+   EL  +  +VP P P A      +LK     L+G  P I L+         +D F E  EG ++P+ +K  +  +G   F +DL    +   L GK L  TI+     SE T+ ++
Sbjct:   29 ASEWVDGHGSRARLISGGG-----------IAGVELELAEGWKTYWRFPGEAGGVAPSFDWSKSTNLENAQVLYPAPKRFTDAAGDTIGYKGSVVFPVRLKAKDASKPIDVRLAFGYGVCRDICIPAQALLSLTVPPDTAISE-ELMDAMARVPAP-PEARREGDPLLKRVVPELSGPRPRIVLETEFSGGADHIDAFIEAPEGLYVPLPKKIADDGKGAVTFEVDLSNDVDIAALKGKQLTATIVSDKGQSEATFPLQ 274          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11980.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4XNS3_9HYPH3.490e-6847.37DsbC domain-containing protein n=1 Tax=Hyphomicrob... [more]
A0A1E3VWC3_9HYPH3.780e-5842.15DsbC domain-containing protein n=2 Tax=Methylocean... [more]
UPI0009319D121.190e-5739.29hypothetical protein n=1 Tax=Hyphomicrobium sp. ND... [more]
A0A2W4TAF5_9PROT1.690e-5743.23DsbC domain-containing protein n=1 Tax=Proteobacte... [more]
A0A3N5N6U3_9HYPH2.930e-5641.35DsbC domain-containing protein n=1 Tax=Hyphomicrob... [more]
UPI00199413FE1.200e-5540.51Uncharacterized protein n=1 Tax=Methyloceanibacter... [more]
UPI0019A9D5F82.330e-5438.97Uncharacterized protein n=1 Tax=Methyloceanibacter... [more]
A0A101VMM0_9PROT5.780e-5442.44PLAT domain-containing protein n=1 Tax=Alphaproteo... [more]
A0A3D3AZR9_9HYPH8.460e-5439.30DsbC domain-containing protein n=3 Tax=Hyphomicrob... [more]
A0A6I0E7U5_HYPSQ2.760e-5339.38DsbC domain-containing protein n=1 Tax=Hyphomicrob... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11980contigP-wetherbeei_contig11980:674..1510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog670307.HYPDE_38023
PFAMsDsbC
Model size837
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue8.86e-50
EggNOG OGsCOG4233@1|root,COG4233@2|Bacteria,1REVE@1224|Proteobacteria,2VEXK@28211|Alphaproteobacteria,3N7F9@45401|Hyphomicrobiaceae
DescriptionDisulphide bond corrector protein DsbC
Cds size837
COG categoryCO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185933.7701268-CDS-P-wetherbeei_contig11980:673..15101683185933.7701268-CDS-P-wetherbeei_contig11980:673..1510Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11980 674..1510 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11980.1.1prot_P-wetherbeei_contig11980.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11980 674..1510 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11980.1.1

>prot_P-wetherbeei_contig11980.1.1 ID=prot_P-wetherbeei_contig11980.1.1|Name=mRNA_P-wetherbeei_contig11980.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=279bp
SLAACAIFAVAPASHVAAQANTSAGPWVKGFNSSVRLIAGSLPPGDASGK
PKLLAGVEMRLADGWKTYWRHPGDDGGLPPSFGWSGSKNLRNAVVRYPAP
HRIKGLVGTSLGYTTSVIFPVEIETDNVSKPVELALDFEFGICREICVPA
EAKLKLVIPPTLAVMPPELAASYQKVPQPAPNAGAILKSAKAILTGATPA
ITLDLAAGAAGGKLDLFAEVVEGAFLPVAQKSGEPAQGIQRFRIDLKGVE
EAPQLSGKTLRLTIMGQGAASEVTWAIK*
back to top

mRNA from alignment at P-wetherbeei_contig11980:674..1510-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11980.1.1 ID=mRNA_P-wetherbeei_contig11980.1.1|Name=mRNA_P-wetherbeei_contig11980.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=837bp|location=Sequence derived from alignment at P-wetherbeei_contig11980:674..1510- (Phaeothamnion wetherbeei SAG_119_79)
AGCCTCGCGGCTTGCGCCATATTTGCCGTTGCGCCGGCATCGCATGTCGC AGCCCAGGCGAACACGTCCGCGGGACCCTGGGTGAAGGGTTTCAACTCGT CCGTGCGGCTCATCGCCGGTTCGCTGCCGCCGGGAGACGCCAGCGGGAAG CCGAAGCTGCTGGCAGGAGTTGAGATGCGCCTAGCGGACGGATGGAAAAC CTATTGGCGCCATCCTGGTGACGACGGTGGACTGCCCCCTTCGTTCGGTT GGTCGGGATCCAAGAACCTCCGGAACGCCGTCGTGCGCTATCCTGCGCCG CATCGGATCAAGGGCCTGGTCGGCACCTCGCTCGGCTACACCACCTCGGT GATCTTTCCAGTAGAGATCGAAACGGACAACGTATCGAAGCCGGTTGAAC TGGCGCTCGATTTCGAGTTCGGCATCTGCCGCGAAATCTGCGTACCCGCA GAAGCAAAACTGAAGCTCGTGATCCCGCCGACGCTCGCGGTGATGCCTCC GGAACTGGCTGCCTCCTACCAGAAGGTGCCGCAGCCGGCACCTAACGCGG GGGCGATCCTTAAGTCGGCCAAGGCCATCCTGACCGGGGCTACCCCGGCG ATCACTCTCGACCTGGCTGCAGGCGCGGCTGGCGGCAAACTCGATCTCTT CGCGGAAGTCGTCGAAGGAGCGTTCCTGCCGGTTGCCCAAAAAAGTGGTG AGCCCGCCCAGGGTATCCAGAGATTCCGCATCGATCTGAAAGGTGTCGAG GAGGCGCCGCAGTTGTCCGGCAAGACGCTGCGGTTGACGATCATGGGACA GGGAGCCGCGTCGGAAGTCACCTGGGCGATCAAGTAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig11980:674..1510-

>mRNA_P-wetherbeei_contig11980.1.1 ID=mRNA_P-wetherbeei_contig11980.1.1|Name=mRNA_P-wetherbeei_contig11980.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=837bp|location=Sequence derived from alignment at P-wetherbeei_contig11980:674..1510- (Phaeothamnion wetherbeei SAG_119_79)
AGCCTCGCGGCTTGCGCCATATTTGCCGTTGCGCCGGCATCGCATGTCGC
AGCCCAGGCGAACACGTCCGCGGGACCCTGGGTGAAGGGTTTCAACTCGT
CCGTGCGGCTCATCGCCGGTTCGCTGCCGCCGGGAGACGCCAGCGGGAAG
CCGAAGCTGCTGGCAGGAGTTGAGATGCGCCTAGCGGACGGATGGAAAAC
CTATTGGCGCCATCCTGGTGACGACGGTGGACTGCCCCCTTCGTTCGGTT
GGTCGGGATCCAAGAACCTCCGGAACGCCGTCGTGCGCTATCCTGCGCCG
CATCGGATCAAGGGCCTGGTCGGCACCTCGCTCGGCTACACCACCTCGGT
GATCTTTCCAGTAGAGATCGAAACGGACAACGTATCGAAGCCGGTTGAAC
TGGCGCTCGATTTCGAGTTCGGCATCTGCCGCGAAATCTGCGTACCCGCA
GAAGCAAAACTGAAGCTCGTGATCCCGCCGACGCTCGCGGTGATGCCTCC
GGAACTGGCTGCCTCCTACCAGAAGGTGCCGCAGCCGGCACCTAACGCGG
GGGCGATCCTTAAGTCGGCCAAGGCCATCCTGACCGGGGCTACCCCGGCG
ATCACTCTCGACCTGGCTGCAGGCGCGGCTGGCGGCAAACTCGATCTCTT
CGCGGAAGTCGTCGAAGGAGCGTTCCTGCCGGTTGCCCAAAAAAGTGGTG
AGCCCGCCCAGGGTATCCAGAGATTCCGCATCGATCTGAAAGGTGTCGAG
GAGGCGCCGCAGTTGTCCGGCAAGACGCTGCGGTTGACGATCATGGGACA
GGGAGCCGCGTCGGAAGTCACCTGGGCGATCAAGTAG
back to top