mRNA_P-wetherbeei_contig11870.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11870.1.1
Unique NamemRNA_P-wetherbeei_contig11870.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11870.1.1 vs. uniprot
Match: A0A836CBL8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBL8_9STRA)

HSP 1 Score: 230 bits (586), Expect = 8.850e-63
Identity = 110/199 (55.28%), Postives = 144/199 (72.36%), Query Frame = 3
Query:    3 AALARKGGDLSRTGADRKTCLDLVLSPEGVEELAVGYYKAAEREPLLGPAVRLSHLTYVGFHLEKLVMHTTAELASPFLSIAVFDAAGERIEKPQDVVSPVLTRPNYLWWAANWHMQNPLENLGPGSLAVFELKSHGPGTDEIRTLGWCVHPLHAASLNTQEVSMEMYQAPVDPTMQRLVPADLFLSAEIFLTTSDAAL 599
            AALAR+GGDLS       +CLDL+  PE +E +AVG+YKAA+  PLL P  RL  LTY+ FH+EKL M +T  L++PFL+++V DAAG+R+EKPQDV +PV++RP YLWW ANWHMQNP+ENLG G + VFELK     T E++ LGW  + ++  S  + EVS+EMY +PVD T++ L PA+LF+S EI LTT    L
Sbjct: 1368 AALARRGGDLSLKTRAGTSCLDLLQRPEDLEHVAVGFYKAADLNPLLPPPSRLKGLTYLTFHVEKLNMQSTERLSAPFLTVSVHDAAGKRLEKPQDVNAPVVSRPTYLWWGANWHMQNPMENLGQGCMVVFELKDQSTVTGEVKNLGWAAYHINTNSATSHEVSLEMYASPVDLTLRTLKPAELFMSGEIMLTTGSGLL 1566          
BLAST of mRNA_P-wetherbeei_contig11870.1.1 vs. uniprot
Match: D7G3L5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3L5_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 6.590e-52
Identity = 97/195 (49.74%), Postives = 140/195 (71.79%), Query Frame = 3
Query:   63 LDLVLSPEGVEELAVGYYKAAEREPLLGPAVRLSHLTYVGFHLEKLVMHTTAELASPFLSIAVFDAAGERIEKPQDVVSPVLTRPNYLWWAANWHMQNPLENLGPGSLAVFELKSHGP-----------GTDEIRTLGWCVHPLHAASLNTQEVSMEMYQAPVDPTMQRLVPADLFLSAEIFLTTSDAALAAAAA 614
            L+LV   + VE++AVG++KAAER P+L P V+LS LTY+ FHLE+LVMH+TA+L SPF++++V D+ G R+E  QD  +PV+ RP+YLWW+ ++HMQNP+ENL PG+  VF +K               G+ ++R LGW +  ++ +++++QEVSMEMYQAPVD + + LVP DLFLS  + LTT+   + AAAA
Sbjct: 1650 LELVNRDQDVEDIAVGHFKAAERSPMLAPPVKLSSLTYLSFHLERLVMHSTADLQSPFITVSVHDSRGRRVEAAQDASAPVVRRPSYLWWSTSYHMQNPVENLEPGTRLVFTVKDQSTEVVSTGRRGVAGSGDVRELGWGMIHVNKSTMSSQEVSMEMYQAPVDLSQKALVPIDLFLSGYVTLTTAQVDMDAAAA 1844          
BLAST of mRNA_P-wetherbeei_contig11870.1.1 vs. uniprot
Match: A0A835ZQ73_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQ73_9STRA)

HSP 1 Score: 161 bits (407), Expect = 3.690e-39
Identity = 88/194 (45.36%), Postives = 116/194 (59.79%), Query Frame = 3
Query:    3 AALARKGGDLSRTG-ADRKTCLDLVLSPEGVEELAVGYYKAAEREPLLGPAVRLSHLTYVGFHLEKLVMHTTAELASPFLSIAVFDAAGERIEKPQDVVSPVLTRPNYLWWAANWHMQNPLENLGPGSLAVFELKSHGPGTDEIRTLGWCVHPLHAASLNTQEVSMEMYQAPVDPTMQRLVPADLFLSAEIFLT 581
            A LA KGGDLS    AD K+ +D+V     +  L   ++   ER PLL P  +L   TY+   LE+  M +T  L SPFLS++V++  G+  E  QDVV P LTRP YLWWA  WHMQNPLE LG GS+ V EL+  G      RT+ W V+ L    LNT+  ++ MY APVD +++RL  A++ +  E FLT
Sbjct: 1591 AVLAWKGGDLSLARPADGKSVVDIVKGERELALLMQKHFHPTERAPLLAPPEKLFGFTYLSLLLERTTMASTDALVSPFLSVSVYNGKGQLSEAQQDVVFPCLTRPGYLWWAQTWHMQNPLETLGAGSVIVVELRDQGEAK-RARTVSWGVYALDLDDLNTRAETLNMYAAPVDLSLKRLELAEVIIQGEAFLT 1783          
BLAST of mRNA_P-wetherbeei_contig11870.1.1 vs. uniprot
Match: W7TRG2_9STRA (Myosin-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRG2_9STRA)

HSP 1 Score: 115 bits (288), Expect = 9.490e-24
Identity = 67/199 (33.67%), Postives = 108/199 (54.27%), Query Frame = 3
Query:    3 AALARKGGDLSRTGADRKTCLDLVLSP--EGVEELAVGYYKAAEREPLLGPAVRLSHLTYVGFHLEKLVMHTTAE--LASPFLSIAVFDAAGERIEKPQDVVSPVLTRPNYLWWAANWHMQNPLENLGPGSLAVFEL--KSHGPGTDEIRTLGWCVHPLHAASLNTQEVSMEMYQAPVDPTMQRLVPADLFLSAEIFLT 581
            AALA+KG +L+      +T +DL+     EG + +  G  K +    L  P  RL   +YV F +EKL M  T++    +P++ I+VF A    +E+ Q +  P L +   +WW   W+MQ P+E+L PGS AV EL  ++ GP         W +  +    +++   ++EMY+ P+D  +QRL PAD FL+ ++ +T
Sbjct: 1804 AALAQKGANLTLRNKSNQTVVDLMAESRQEGTKLMGPGQVKMSADRTLFPPPFRLPACSYVSFFVEKLAMAETSQEKFPAPYIKISVFSAKQHLVERAQIITYPALVKGRSMWWGWTWNMQTPVEHLSPGSFAVLELIDRTRGPQA-------WALLHVTDTHVDSGLQTLEMYRYPLDLRLQRLEPADFFLTGDMRVT 1995          
BLAST of mRNA_P-wetherbeei_contig11870.1.1 vs. uniprot
Match: D7G6I1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6I1_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 1.420e-20
Identity = 53/123 (43.09%), Postives = 70/123 (56.91%), Query Frame = 3
Query:  156 RLSHLTYVGFHLEKLVMHTTAELASPFLSIAVFDAAGERIEKPQDVVSPVLTRPNYLWWAANWHMQNPLENLGPGSLAVFELKSHGPGTDEIRTLGWCVHPLHAASLNTQEVSMEMYQAPVDP 524
            +L   TY+   LE LV+ + A++  P L+++VF A G+ +E  Q+  SP L    YLWW   WHMQ PLE LGPGS  VFEL+    G+   + + W   PL    LNTQ   +  Y APVDP
Sbjct: 1771 KLLGFTYISVFLETLVVASAADIGKPTLTVSVFSAKGKLVESAQEFDSPTLFSSMYLWWGRTWHMQTPLETLGPGSSMVFELRDIQGGSK--KAICWGALPLDPDHLNTQPEKLSTYLAPVDP 1891          
BLAST of mRNA_P-wetherbeei_contig11870.1.1 vs. uniprot
Match: A0A6H5L704_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L704_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.720e-17
Identity = 48/119 (40.34%), Postives = 70/119 (58.82%), Query Frame = 3
Query:  234 FLSIAVFDAAGERIEKPQDVVSPVLTRPNYLWWAANWHMQNPLENLGPGSLAVFELKSHGPGTDEIRTLGWCVHPLHAASLNTQEVSMEMYQAPVDPTMQRLVPADLFLSAEIFLTTSD 590
            F+ ++V++A G+  E  QDV  P++T P YLWWA  WHMQ PLE LG GS   FELK  G   +  RTL W  + L+   +N++  S+  Y A V P + RL P++  L  +  +T ++
Sbjct:  511 FVRVSVYNAKGKLSEAQQDVTVPIMTNPEYLWWAHTWHMQTPLETLGAGSFVAFELKEKGEHKE--RTLSWGAYHLNPDEVNSRPESLCAY-AGVPPALVRLEPSEFSLVGDAIITKAN 626          
BLAST of mRNA_P-wetherbeei_contig11870.1.1 vs. uniprot
Match: D7G6I0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6I0_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 3.180e-11
Identity = 34/70 (48.57%), Postives = 45/70 (64.29%), Query Frame = 3
Query:  234 FLSIAVFDAAGERIEKPQDVVSPVLTRPNYLWWAANWHMQNPLENLGPGSLAVFELKSH-GPGTDEIRTL 440
            F+ ++V++A G+  E  QDV  P++T P YLWWA  WHMQ PLE LG GS   FELK   G GT  ++ +
Sbjct: 1782 FVRVSVYNAKGKLSEAQQDVTVPIMTNPEYLWWAHTWHMQTPLETLGAGSFVAFELKEKVGMGTRWVKMI 1851          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11870.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A836CBL8_9STRA8.850e-6355.28P-loop containing nucleoside triphosphate hydrolas... [more]
D7G3L5_ECTSI6.590e-5249.74Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZQ73_9STRA3.690e-3945.36P-loop containing nucleoside triphosphate hydrolas... [more]
W7TRG2_9STRA9.490e-2433.67Myosin-like protein n=2 Tax=Monodopsidaceae TaxID=... [more]
D7G6I1_ECTSI1.420e-2043.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5L704_9PHAE1.720e-1740.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6I0_ECTSI3.180e-1148.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11870contigP-wetherbeei_contig11870:172..1758 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G3L5
PFAMsAida_C2,Ank_2,Ank_4,IQ,Myosin_head,PH
Model size1318
Max annot lvl2759|Eukaryota
KEGG koko:K10352,ko:K10357
KEGG Pathwayko04530,map04530
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.88e-37
EggNOG OGsCOG5022@1|root,KOG0160@2759|Eukaryota
Descriptionmotor activity
Cds size429
COG categoryZ
BRITEko00000,ko00001,ko03019,ko03029,ko04131,ko04147,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185929.3687289-UTR-P-wetherbeei_contig11870:171..8571683185929.3687289-UTR-P-wetherbeei_contig11870:171..857Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11870 172..857 -
1683185929.4073417-UTR-P-wetherbeei_contig11870:1555..17581683185929.4073417-UTR-P-wetherbeei_contig11870:1555..1758Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11870 1556..1758 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185929.388289-CDS-P-wetherbeei_contig11870:857..12021683185929.388289-CDS-P-wetherbeei_contig11870:857..1202Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11870 858..1202 -
1683185929.398794-CDS-P-wetherbeei_contig11870:1471..15551683185929.398794-CDS-P-wetherbeei_contig11870:1471..1555Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11870 1472..1555 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11870.1.1prot_P-wetherbeei_contig11870.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11870 858..1555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11870.1.1

>prot_P-wetherbeei_contig11870.1.1 ID=prot_P-wetherbeei_contig11870.1.1|Name=mRNA_P-wetherbeei_contig11870.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=143bp
MHTTAELASPFLSIAVFDAAGERIEKPQDVVSPVLTRPNYLWWAANWHMQ
NPLENLGPGSLAVFELKSHGPGTDEIRTLGWCVHPLHAASLNTQEVSMEM
YQAPVDPTMQRLVPADLFLSAEIFLTTSDAALAAAAASSLNA*
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mRNA from alignment at P-wetherbeei_contig11870:172..1758-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11870.1.1 ID=mRNA_P-wetherbeei_contig11870.1.1|Name=mRNA_P-wetherbeei_contig11870.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1587bp|location=Sequence derived from alignment at P-wetherbeei_contig11870:172..1758- (Phaeothamnion wetherbeei SAG_119_79)
CGGCGGCGCTGGCGCGCAAGGGCGGTGACCTGTCTCGCACCGGCGCGGAC CGCAAGACGTGCCTGGACCTGGTGTTGTCGCCGGAGGGAGTCGAGGAACT GGCAGTCGGTTACTACAAGGCGGCGGAGCGGGAGCCGCTGCTGGGGCCGG CGGTGCGGTTGAGCCACCTAACGTACGTGGGCTTTCACCTGGAGAAGCTG GTAATGCACACGACAGCCGAGCTGGCGAGCCCGTTCCTGAGCATCGCCGT GTTTGACGCCGCCGGCGAGCGCATCGAGAAGCCGCAGGTGATAATGAAGA GTAAGGGGAGGATGAGAGAGGGAGGAATGGGCGTTGGATGGGGGAATGAC TTCTTAAGGTGTCTTTTGCGCAAGGGCAGCGCTCTATGTATATTGGTTGT GATGCACTTTGGCCCCACTAGTTATCATTGTTTGACCGCACTCACCATGC TCCACTTGAAAGGATGATGGGATGGCCGCGCCTTCCCATTTTGTTTCCCT TCTCCCCCGTTCTCTCCTAAACCCTTTTCCAACATCCCCATCTTATTCTT CCGCAGGACGTTGTCTCGCCGGTGCTGACGCGGCCCAACTACCTCTGGTG GGCCGCAAACTGGCACATGCAGAACCCGCTGGAAAACCTAGGCCCCGGAA GCCTCGCGGTCTTCGAGCTCAAGTCGCACGGCCCCGGCACGGACGAGATT AGGACCCTCGGCTGGTGTGTCCACCCGCTGCACGCCGCCTCCCTCAACAC GCAGGAGGTCAGCATGGAGATGTACCAGGCGCCCGTCGATCCCACCATGC AGCGGCTCGTACCGGCGGACCTGTTCCTCTCAGCCGAGATCTTCTTGACC ACATCGGATGCCGCCCTCGCCGCCGCCGCCGCCTCCTCGTTGAATGCGTG AGCGGCCGGCCGGCGGGTCCGGCGCGTCGCTGGCGCGGTTGGAAACTTTC ACCGTTGCCTTTCGCTACGAGGGCCGCCGGAGCCGCTGCTGCTACGAAGA TGACTTTGAAGCCGCGTGTTCGGAATGGGCGGGAATGTCTCATAGCGGGT TTGGCGGCGACAGTTAGAGGCGGCAGCGTTAGCAGAGATGACGGCGACAG CCGCAGCGAAGACGGCGATGGCAGTGGCGATTACGGCTCTAGCAAAGAGG CGCTTTTCACCTCAGCCCTTCGCCAGAGGCCCAAGTTGTGTCCTTTTACA TGTGTGCGGAACGACAACGGCCGCGCCTATCCACGCAGCGATGCCGACCG TCTGCCCGGAGGAGGATGAGGTTTTCCCAACCCTTTCGCCTCTCCTCCTC CGGCGTAGAGCGTCTGAGAGCCGATGTGGGAGCAATTCCAGTCGGCCGAT GCGGCATTAAAACGGCAGCAGCGGCAAGTGTTCTGGGCTGCGGCAGGCAC CGCCCGCGGCGACAAGACTTTCGCGGGGTTTAAGGTGTTACGTCGTGCAC CGCGGCTCCTCGGGATGCCGCTGGCGACCGATGGAAGCTCGGCGTGAGCG TGCCGCTGCTGCGAAACCATCGGGGCCTTTGCGGCCATGGTCGGACAGCG GCGATTCTTTTATGTTGTAGTTTATGGTAATCGGTGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11870:172..1758-

>mRNA_P-wetherbeei_contig11870.1.1 ID=mRNA_P-wetherbeei_contig11870.1.1|Name=mRNA_P-wetherbeei_contig11870.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=429bp|location=Sequence derived from alignment at P-wetherbeei_contig11870:172..1758- (Phaeothamnion wetherbeei SAG_119_79)
ATGCACACGACAGCCGAGCTGGCGAGCCCGTTCCTGAGCATCGCCGTGTT
TGACGCCGCCGGCGAGCGCATCGAGAAGCCGCAGGACGTTGTCTCGCCGG
TGCTGACGCGGCCCAACTACCTCTGGTGGGCCGCAAACTGGCACATGCAG
AACCCGCTGGAAAACCTAGGCCCCGGAAGCCTCGCGGTCTTCGAGCTCAA
GTCGCACGGCCCCGGCACGGACGAGATTAGGACCCTCGGCTGGTGTGTCC
ACCCGCTGCACGCCGCCTCCCTCAACACGCAGGAGGTCAGCATGGAGATG
TACCAGGCGCCCGTCGATCCCACCATGCAGCGGCTCGTACCGGCGGACCT
GTTCCTCTCAGCCGAGATCTTCTTGACCACATCGGATGCCGCCCTCGCCG
CCGCCGCCGCCTCCTCGTTGAATGCGTGA
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