prot_P-wetherbeei_contig11419.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig11419.1.1
Unique Nameprot_P-wetherbeei_contig11419.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length239
Homology
BLAST of mRNA_P-wetherbeei_contig11419.1.1 vs. uniprot
Match: D8LNK4_ECTSI (DNA polymerase mu n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK4_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 1.720e-25
Identity = 78/262 (29.77%), Postives = 116/262 (44.27%), Query Frame = 0
Query:    5 KLPGVTAAARVTLEWYDDLSAKISRSEVVEIAERARQDVDAAAARVDPTAEVRFTVVGGYRRGNPSSHDVDVLVTLARCEGDAAPQPDYVE-----------------------------FRHAIEEELGRSGLLRHVFLSGAFSVQASDQDSPFEKQEIVGEQRRFALVPGFTGHMRRLDVVVVKPEQYAFGMLSWSGDTLFQRSIREYAEHERKWKFSQNGLVDLEHQQPVPAIVEGKLTTEEAIFKELGLKYIPPEFRF 237
            K P +     + L+ + D+   I R EVV IA+  R++ +      DP   + F V GG+RRG  + HDVDVLV+  R  G+   Q  +VE                             F   ++E L   G L      G        +     + ++  E+   AL     G   R+D+V V   Q+ F +L WSG  +F++ +R Y E + ++K SQ G+      +PV  IV     TEE IF+ LGL+YIPP  R+
Sbjct:  329 KRPNLKPEVVMGLKHFHDMQVPIGRDEVVGIADEVREEAERFGRERDPEGTLLFEVCGGFRRGKETLHDVDVLVSFRRGNGEPGHQ-GFVEALRALDGYLVEGEQIVGAEVKAFEDLEYFFVEGLKERLMERGKLCATLYQGQMGGFTKAKGGQAPQPKLEREEVLMALWQ-LPGRKCRIDIVQVASSQWPFALLGWSGTVMFEKDVRRYTEEQTEYKLSQKGVTIRATDEPVTDIVS--FQTEEDIFRFLGLEYIPPHLRW 586          
BLAST of mRNA_P-wetherbeei_contig11419.1.1 vs. uniprot
Match: UPI001C2E1C27 (DNA-directed DNA/RNA polymerase mu isoform X2 n=1 Tax=Peromyscus maniculatus bairdii TaxID=230844 RepID=UPI001C2E1C27)

HSP 1 Score: 97.1 bits (240), Expect = 1.450e-19
Identity = 80/246 (32.52%), Postives = 119/246 (48.37%), Query Frame = 0
Query:    4 GKLPGVTAAARVTLEWYDDLSAKISRSEVVEIAERARQDVDAAAARVDPTAEVRFTVVGGYRRGNPSSHDVDVLVTLARCEGDAAPQPDYVEFRHAIEEELGRSGLL------RHVFLSGAFSVQASDQDSPFEKQEIV---GEQRRFALV----PGFTGHMRRLDVVVVKPEQYAFGMLSWSGDTLFQRSIREYAEHERKWKFSQNGLVDLEHQQPVPAIVEGKLTTEEAIFKELGLKYIPPEFR 236
            G+   +T   +  L++Y+DLS  + R++    AE  +Q V+AA  +  P A V  T+ GG+RRG    HDVD L+T      +A   P        +  +L R GL+      R    SG    Q    D+ FE+   +    +  R ALV    P       R+D+VV    Q+ F +L W+G  LF+R +R ++  E+    + +GL D E +    A      T+EE IF+ LGLKY+PPE R
Sbjct:  253 GQPQRLTQQQKAGLQYYEDLSTPVGRAD----AEALQQLVEAAVRQTLPGATV--TLTGGFRRGKSEGHDVDFLITHPEEGQEAGLLP-------RVMSQLQRQGLVLYHQYHRSHLDSGRLLRQNYTMDA-FERSFCILCLPQPPRAALVGSLQPCPARRAVRVDLVVTPNSQFPFALLGWTGSQLFERELRRFSRQEKGLWLNSHGLFDPERKTFFHA------TSEEDIFRLLGLKYLPPEQR 478          
BLAST of mRNA_P-wetherbeei_contig11419.1.1 vs. uniprot
Match: A0A6I9L4I3_PERMB (DNA-directed DNA/RNA polymerase mu n=14 Tax=Cricetidae TaxID=337677 RepID=A0A6I9L4I3_PERMB)

HSP 1 Score: 97.1 bits (240), Expect = 1.530e-19
Identity = 80/246 (32.52%), Postives = 119/246 (48.37%), Query Frame = 0
Query:    4 GKLPGVTAAARVTLEWYDDLSAKISRSEVVEIAERARQDVDAAAARVDPTAEVRFTVVGGYRRGNPSSHDVDVLVTLARCEGDAAPQPDYVEFRHAIEEELGRSGLL------RHVFLSGAFSVQASDQDSPFEKQEIV---GEQRRFALV----PGFTGHMRRLDVVVVKPEQYAFGMLSWSGDTLFQRSIREYAEHERKWKFSQNGLVDLEHQQPVPAIVEGKLTTEEAIFKELGLKYIPPEFR 236
            G+   +T   +  L++Y+DLS  + R++    AE  +Q V+AA  +  P A V  T+ GG+RRG    HDVD L+T      +A   P        +  +L R GL+      R    SG    Q    D+ FE+   +    +  R ALV    P       R+D+VV    Q+ F +L W+G  LF+R +R ++  E+    + +GL D E +    A      T+EE IF+ LGLKY+PPE R
Sbjct:  266 GQPQRLTQQQKAGLQYYEDLSTPVGRAD----AEALQQLVEAAVRQTLPGATV--TLTGGFRRGKSEGHDVDFLITHPEEGQEAGLLP-------RVMSQLQRQGLVLYHQYHRSHLDSGRLLRQNYTMDA-FERSFCILCLPQPPRAALVGSLQPCPARRAVRVDLVVTPNSQFPFALLGWTGSQLFERELRRFSRQEKGLWLNSHGLFDPERKTFFHA------TSEEDIFRLLGLKYLPPEQR 491          
BLAST of mRNA_P-wetherbeei_contig11419.1.1 vs. uniprot
Match: A0A4U5VAU8_COLLU (DNA-directed DNA/RNA polymerase mu n=4 Tax=Sciaenidae TaxID=30870 RepID=A0A4U5VAU8_COLLU)

HSP 1 Score: 97.1 bits (240), Expect = 1.580e-19
Identity = 80/248 (32.26%), Postives = 116/248 (46.77%), Query Frame = 0
Query:    7 PGVTAAARVTLEWYDDLSAKISRSEVVEIAERARQDVDAAAARVDPTAEVRFTVVGGYRRGNPSSHDVDVLVTLARCEGDAAPQPDYVEFRHA--------------IEEELGRSGLLRHVF-LSGAFSVQASDQDSPFEKQEIVGEQRRFALVPGFTGHMRR---LDVVVVKPEQYAFGMLSWSGDTLFQRSIREYAEHERKWKFSQNGLVDLEHQQPVPAIVEGKLTTEEAIFKELGLKYIPPEFR 236
            P +  A R  LE YDD++  +S++E    A+   Q V+ A A V P A+V  T++GG+RRG  S HDVD L+T      +    P  V +  +              +E E G +    ++      FSV    +D   EK+     Q R A        + R   +D+VV    Q+AF +L W+G  LF+R +R +A HE+    S + L D   +  + A      T+EE IF  LGL YIPP  R
Sbjct:  268 PTLNRAQRAGLEHYDDINQPVSKAE----ADAIGQVVEEAVAAVLPGAQV--TLIGGFRRGKLSGHDVDFLITHPEEGREVGLMPKIVSWLESQGFLLYQKTTRNSYLESEDGPARPCSNMDRFERCFSVFKLSED---EKRRAGQTQSRHASAEDGGRKLWRAVRVDLVVSPISQFAFALLGWTGSKLFERELRRWAGHEKTMSLSSHALYDGTQRTYLRA------TSEEEIFAHLGLDYIPPSER 500          
BLAST of mRNA_P-wetherbeei_contig11419.1.1 vs. uniprot
Match: G3NAV1_GASAC (DNA-directed DNA/RNA polymerase mu n=4 Tax=Gasterosteidae TaxID=69291 RepID=G3NAV1_GASAC)

HSP 1 Score: 97.1 bits (240), Expect = 1.610e-19
Identity = 77/246 (31.30%), Postives = 113/246 (45.93%), Query Frame = 0
Query:    7 PGVTAAARVTLEWYDDLSAKISRSEVVEIAERARQDVDAAAARVDPTAEVRFTVVGGYRRGNPSSHDVDVLVTLARCEGDAAPQPDYVEFRHAIEEELGRSGLLRHVFLSGAFSVQASDQDSP-----------FEKQEIVGEQRRFALVPGFTGHMR-----RLDVVVVKPEQYAFGMLSWSGDTLFQRSIREYAEHERKWKFSQNGLVDLEHQQPVPAIVEGKLTTEEAIFKELGLKYIPPEFR 236
            P +  A R  L  YDDL+  + R+E   +A      V+AAA  V P A  R T++GG+RRG  + HDVD L+T      +A   P  V +       L   G L +   +    ++A++  +            F   ++  E  R     G  G  R     R+D+VV    Q+AF +L W+G  LF+R +R +A HE     S + L D    + + A      ++EE IF  LGL+YIPP  R
Sbjct:  280 PTLNRAQRAGLRHYDDLNRPVGRAEAAAVA----AVVEAAAGSVLPGA--RVTLIGGFRRGKQTGHDVDFLITHPEEGREAGLMPKLVSW-------LDSQGFLLYQKTNSNSYLEAAEGPARPASNMDRFERCFSVFKLPEEAGRGGAGAGGEGGPRPWRAVRVDLVVSPVSQFAFALLGWTGSKLFERELRRWAGHEMNMCLSSHALYDHRQSRYLRA------SSEEEIFAHLGLEYIPPSER 506          
BLAST of mRNA_P-wetherbeei_contig11419.1.1 vs. uniprot
Match: A0A0P1BBY5_9BASI (DNA polymerase lambda n=2 Tax=Ceraceosorus TaxID=401624 RepID=A0A0P1BBY5_9BASI)

HSP 1 Score: 96.7 bits (239), Expect = 2.870e-19
Identity = 69/224 (30.80%), Postives = 114/224 (50.89%), Query Frame = 0
Query:   22 DLSAKISRSEVVEIAERARQDVDAAAARVDPTAEVRFTVVGGYRRGNPSSHDVDVLVTLARCEGD---AAPQPDYVEFRHAIEEELGRSGLLRHVFLSGAFSVQASDQDSP-FEKQEIVGEQRRFALVPGFTGHM---RRLDVVVVKPEQYAFGMLSWSGDTLFQRSIREYAEHERKWKFSQNGLVDLEHQQPVPAIVEGKLTTEEAIFKELGLKYIPPEFRFC 238
            DL  +++RSEV +IAE   ++ +    RV+      +T+ G YRRG P+S DVD+++T    +G    + P        H ++  L R   L H+  + +  V+  D  +P  +  EIV       L    TG     RR+DV++  P+ Y   ++ W+G T+F+R IR  A+ +  +KF  +GLV +E+++     V     TE+ +F  L L ++PP  R C
Sbjct:  516 DLVQRMNRSEVEKIAETISKEFEEVLPRVE------YTIAGSYRRGKPTSSDVDLIITDTSDDGKEMLSNPNTQLSMLNHVLDN-LKRKAYLTHIVGAPSRDVKIGDIKAPKIQIAEIV------VLPTSSTGERPIHRRVDVMLTNPQVYGATIVGWTGSTMFERDIRRQAK-DLGFKFHSHGLVRVENEK-----VALSTPTEQDVFDMLKLPFMPPHLRNC 720          
BLAST of mRNA_P-wetherbeei_contig11419.1.1 vs. uniprot
Match: UPI000E1E930D (DNA-directed DNA/RNA polymerase mu n=1 Tax=Dromaius novaehollandiae TaxID=8790 RepID=UPI000E1E930D)

HSP 1 Score: 95.1 bits (235), Expect = 3.770e-19
Identity = 74/231 (32.03%), Postives = 114/231 (49.35%), Query Frame = 0
Query:    7 PGVTAAARVTLEWYDDLSAKISRSEVVEIAERARQDVDAAAARVDPTAEVRFTVVGGYRRGNPSSHDVDVLVTLARCEGDAAPQPDYVEFRHAIEEELGRSGLLRHVFLS-GAFSVQASDQDSPFEKQEIVGEQRRFALVPGFTGHMRRLDVVVVKPEQYAFGMLSWSGDTLFQRSIREYAEHERKWKFSQNGLVDLEHQQPVPAIVEGKLTTEEAIFKELGLKYIPPEFR 236
            P ++   +  L  ++DL+  ++ +E   +AE  R +    A RV P A V  T+VGG+RRG P+ HDVD+L++      + A           +   L + GLL +       F ++ S   S  ++ E     R FA+V        R+D+VV    Q+AF +L W+G   F+R +R +A H+R    S +GL D   +  +PA       +EE IF+ LGL YIPP  R
Sbjct:  180 PRLSRQQQAGLRHWEDLATPVTLAEAEAVAELVRAE----ARRVLPDATV--TLVGGFRRGKPTGHDVDLLLSHPEEGRERA-------LLGPLVARLEQQGLLLYEQSQPNTFGLEPSGGGSGLDRFE-----RCFAIVR--LARALRVDMVVAPRGQFAFALLGWTGSRHFERELRRFASHQRGLALSSHGLYDPXRELFLPA------ASEEEIFQLLGLDYIPPAER 384          
BLAST of mRNA_P-wetherbeei_contig11419.1.1 vs. uniprot
Match: N4XE06_COCH4 (DNA polymerase n=6 Tax=Bipolaris TaxID=33194 RepID=N4XE06_COCH4)

HSP 1 Score: 95.5 bits (236), Expect = 6.940e-19
Identity = 76/246 (30.89%), Postives = 114/246 (46.34%), Query Frame = 0
Query:   14 RVTLEWYDDLSAKISRSEVVEIAERARQDVDAAAARVDPTAEVRFTVVGGYRRGNPSSHDVDVLVTLARCEGDAAPQPDYVE-------FRHAIEEELGRSGLLRHV--FLSGAFSVQASD---------QDSPFEKQEIVGEQRRFALVPGFTGHMRRLDVVVVKPEQYAFGMLSWSGDTLFQRSIREYAEHERKWKFSQNGLVDLEHQQPV----PAIVEGKLT-TEEAIFKELGLKYIPPEFR 236
            ++ +++Y++    I R+EV  IA   R   D A    D    +  T+VGGYRRG   S DVD++V+    E  A    + VE         H +   L  +   +H   F S   +    D         QD  +  +E   E+   A  P      RR+D++V         ++ WSG T FQR +R YA+H + WKF  +G+    + + +    P  VEG     E+A+FK LGL+YIPPE+R
Sbjct:  418 QIGIKYYEEFQEPIPRAEVEHIAAVVR---DHAVKLRDE--HISITIVGGYRRGKSVSGDVDIIVSHPELESTAGLVQEIVESLEDAQWITHTLTMSLANTKRGQHTLPFRSAKGAGVGFDTLDKALVVWQDPAWPTREGDLERNPRAKNPAIH---RRVDIIVAPWRTVGCAVMGWSGGTTFQRDLRRYAKHVKGWKFDSSGIRSRANGEAIMIEGPDGVEGTPEDAEKAVFKGLGLEYIPPEYR 655          
BLAST of mRNA_P-wetherbeei_contig11419.1.1 vs. uniprot
Match: A0A836CAM8_9STRA (BRCT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAM8_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 7.220e-19
Identity = 55/187 (29.41%), Postives = 89/187 (47.59%), Query Frame = 0
Query:   50 VDPTAEVRFTVVGGYRRGNPSSHDVDVLVTLARCEGDAAPQPDYVEFRHAIEEELGRSGLLRHVFLSGAFSVQASDQDSPFEKQEIVGEQRRFALVPGFTGHMRRLDVVVVKPEQYAFGMLSWSGDTLFQRSIREYAEHERKWKFSQNGLVDLEHQQPVPAIVEGKLTTEEAIFKELGLKYIPPEFR 236
            +DP   ++F + GGYRRG   + D+D++ T  R  G      D+V + H + +++   G ++   L    + + S+    +E     G      L P + G MRR+D+ +  P Q+A+G+L W+G   F R +R YA          +G                  T EE +F+ LGL++IPPEFR
Sbjct:  336 LDPKGTIKFMIGGGYRRGKELTSDLDIIATFERHGGSPHGCGDHVRWAHMLADKMEERGYIKVCNLPDGMNNKKSEDTGMYE-----GNTSLLGLYP-WRGKMRRVDIFMSAPSQWAYGVLGWTGSRTFLRQMRRYAS---------DGF-----------------TREEQVFEMLGLEFIPPEFR 490          
BLAST of mRNA_P-wetherbeei_contig11419.1.1 vs. uniprot
Match: A0A8C4KIM6_DRONO (DNA-directed DNA/RNA polymerase mu n=1 Tax=Dromaius novaehollandiae TaxID=8790 RepID=A0A8C4KIM6_DRONO)

HSP 1 Score: 95.1 bits (235), Expect = 8.510e-19
Identity = 74/231 (32.03%), Postives = 114/231 (49.35%), Query Frame = 0
Query:    7 PGVTAAARVTLEWYDDLSAKISRSEVVEIAERARQDVDAAAARVDPTAEVRFTVVGGYRRGNPSSHDVDVLVTLARCEGDAAPQPDYVEFRHAIEEELGRSGLLRHVFLS-GAFSVQASDQDSPFEKQEIVGEQRRFALVPGFTGHMRRLDVVVVKPEQYAFGMLSWSGDTLFQRSIREYAEHERKWKFSQNGLVDLEHQQPVPAIVEGKLTTEEAIFKELGLKYIPPEFR 236
            P ++   +  L  ++DL+  ++ +E   +AE  R +    A RV P A V  T+VGG+RRG P+ HDVD+L++      + A           +   L + GLL +       F ++ S   S  ++ E     R FA+V        R+D+VV    Q+AF +L W+G   F+R +R +A H+R    S +GL D   +  +PA       +EE IF+ LGL YIPP  R
Sbjct:  352 PRLSRQQQAGLRHWEDLATPVTLAEAEAVAELVRAE----ARRVLPDATV--TLVGGFRRGKPTGHDVDLLLSHPEEGRERA-------LLGPLVARLEQQGLLLYEQSQPNTFGLEPSGGGSGLDRFE-----RCFAIVR--LARALRVDMVVAPRGQFAFALLGWTGSRHFERELRRFASHQRGLALSSHGLYDPXRELFLPA------ASEEEIFQLLGLDYIPPAER 556          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11419.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNK4_ECTSI1.720e-2529.77DNA polymerase mu n=1 Tax=Ectocarpus siliculosus T... [more]
UPI001C2E1C271.450e-1932.52DNA-directed DNA/RNA polymerase mu isoform X2 n=1 ... [more]
A0A6I9L4I3_PERMB1.530e-1932.52DNA-directed DNA/RNA polymerase mu n=14 Tax=Cricet... [more]
A0A4U5VAU8_COLLU1.580e-1932.26DNA-directed DNA/RNA polymerase mu n=4 Tax=Sciaeni... [more]
G3NAV1_GASAC1.610e-1931.30DNA-directed DNA/RNA polymerase mu n=4 Tax=Gastero... [more]
A0A0P1BBY5_9BASI2.870e-1930.80DNA polymerase lambda n=2 Tax=Ceraceosorus TaxID=4... [more]
UPI000E1E930D3.770e-1932.03DNA-directed DNA/RNA polymerase mu n=1 Tax=Dromaiu... [more]
N4XE06_COCH46.940e-1930.89DNA polymerase n=6 Tax=Bipolaris TaxID=33194 RepID... [more]
A0A836CAM8_9STRA7.220e-1929.41BRCT domain-containing protein n=1 Tax=Tribonema m... [more]
A0A8C4KIM6_DRONO8.510e-1932.03DNA-directed DNA/RNA polymerase mu n=1 Tax=Dromaiu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022312DNA polymerase family XPRINTSPR00869DNAPOLXcoord: 154..163
score: 35.38
coord: 218..236
score: 50.61
coord: 59..73
score: 53.33
coord: 73..81
score: 51.28
coord: 170..183
score: 36.81
IPR022312DNA polymerase family XPANTHERPTHR11276DNA POLYMERASE TYPE-X FAMILY MEMBERcoord: 9..236
IPR001726DNA nucleotidylexotransferase (TdT) / DNA-directed DNA/RNA polymerase muPRINTSPR00871DNAPOLXTDTcoord: 54..65
score: 32.29
coord: 219..238
score: 53.12
coord: 181..204
score: 34.9
IPR037160DNA polymerase, thumb domain superfamilyGENE3D3.30.210.10DNA polymerase, thumb domaincoord: 167..237
e-value: 1.8E-19
score: 71.2
IPR029398DNA polymerase beta, thumb domainPFAMPF14791DNA_pol_B_thumbcoord: 169..236
e-value: 1.1E-16
score: 60.7
IPR028207DNA polymerase beta, palm domainPFAMPF14792DNA_pol_B_palmcoord: 27..115
e-value: 2.5E-8
score: 34.1
IPR043519Nucleotidyltransferase superfamilyGENE3D3.30.460.10Beta Polymerase, domain 2coord: 26..166
e-value: 2.3E-16
score: 61.9
IPR043519Nucleotidyltransferase superfamilySUPERFAMILY81301Nucleotidyltransferasecoord: 30..236
NoneNo IPR availablePIRSRPIRSR000817-1PIRSR000817-1coord: 14..236
e-value: 4.7E-25
score: 86.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11419contigP-wetherbeei_contig11419:284..1767 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11419.1.1mRNA_P-wetherbeei_contig11419.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig11419 28..1908 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig11419.1.1 ID=prot_P-wetherbeei_contig11419.1.1|Name=mRNA_P-wetherbeei_contig11419.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=239bp
MEEGKLPGVTAAARVTLEWYDDLSAKISRSEVVEIAERARQDVDAAAARV
DPTAEVRFTVVGGYRRGNPSSHDVDVLVTLARCEGDAAPQPDYVEFRHAI
EEELGRSGLLRHVFLSGAFSVQASDQDSPFEKQEIVGEQRRFALVPGFTG
HMRRLDVVVVKPEQYAFGMLSWSGDTLFQRSIREYAEHERKWKFSQNGLV
DLEHQQPVPAIVEGKLTTEEAIFKELGLKYIPPEFRFC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022312DNA_pol_X
IPR001726TdT/Mu
IPR037160DNA_Pol_thumb_sf
IPR029398PolB_thumb
IPR028207DNA_pol_B_palm_palm
IPR043519NT_sf