mRNA_P-wetherbeei_contig11419.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig11419.1.1 vs. uniprot
Match: D8LNK4_ECTSI (DNA polymerase mu n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK4_ECTSI) HSP 1 Score: 123 bits (308), Expect = 3.170e-27 Identity = 90/300 (30.00%), Postives = 133/300 (44.33%), Query Frame = 1 Query: 64 VLAVGPAKAAEWFAAGASSVQQAKRLM------EEG--KLPGVTAAARVTLEWYDDLSAKISRSEVVEIAERARQDVDAAAARVDPTAEVRFTVVGGYRRGNPSSHDVDVLVTLARCEGDAAPQPDYVE-----------------------------FRHAIEEELGRSGLLRHVFLSGAFSVQASDQDSPFEKQEIVGEQRRFALVPGFTGHMRRLDVVVVKPEQYAFGMLSWSGDTLFQRSIREYAEHERKWKFSQNGLVDLEHQQPVPAIVEGKLTTEEAIFKELGLKYIPPEFRF 852 V VG A +W+ G SV+ A+R + EG K P + + L+ + D+ I R EVV IA+ R++ + DP + F V GG+RRG + HDVDVLV+ R G+ Q +VE F ++E L G L G + + ++ E+ AL G R+D+V V Q+ F +L WSG +F++ +R Y E + ++K SQ G+ +PV IV TEE IF+ LGL+YIPP R+ Sbjct: 291 VHGVGSRTAKDWYNRGIRSVEDARRTLLPNDDDTEGDEKRPNLKPEVVMGLKHFHDMQVPIGRDEVVGIADEVREEAERFGRERDPEGTLLFEVCGGFRRGKETLHDVDVLVSFRRGNGEPGHQ-GFVEALRALDGYLVEGEQIVGAEVKAFEDLEYFFVEGLKERLMERGKLCATLYQGQMGGFTKAKGGQAPQPKLEREEVLMALWQ-LPGRKCRIDIVQVASSQWPFALLGWSGTVMFEKDVRRYTEEQTEYKLSQKGVTIRATDEPVTDIVS--FQTEEDIFRFLGLEYIPPHLRW 586
BLAST of mRNA_P-wetherbeei_contig11419.1.1 vs. uniprot
Match: UPI000E1E930D (DNA-directed DNA/RNA polymerase mu n=1 Tax=Dromaius novaehollandiae TaxID=8790 RepID=UPI000E1E930D) HSP 1 Score: 103 bits (257), Expect = 4.770e-21 Identity = 87/281 (30.96%), Postives = 135/281 (48.04%), Query Frame = 1 Query: 10 EGAVDSQRSYSRLSFYSAVLAVGPAKAAEWFAAGASSVQQAKRLMEEGKLPGVTAAARVTLEWYDDLSAKISRSEVVEIAERARQDVDAAAARVDPTAEVRFTVVGGYRRGNPSSHDVDVLVTLARCEGDAAPQPDYVEFRHAIEEELGRSGLLRHVFLS-GAFSVQASDQDSPFEKQEIVGEQRRFALVPGFTGHMRRLDVVVVKPEQYAFGMLSWSGDTLFQRSIREYAEHERKWKFSQNGLVDLEHQQPVPAIVEGKLTTEEAIFKELGLKYIPPEFR 849 E A S+R Y + ++ + VG AA W+ G ++ L G P ++ + L ++DL+ ++ +E +AE R + A RV P A V T+VGG+RRG P+ HDVD+L++ + A + L + GLL + F ++ S S ++ E R FA+V R+D+VV Q+AF +L W+G F+R +R +A H+R S +GL D + +PA +EE IF+ LGL YIPP R Sbjct: 136 EAARRSER-YRTMELFTGIFGVGTQTAARWYRQGLRTLDD---LRAAG--PRLSRQQQAGLRHWEDLATPVTLAEAEAVAELVRAE----ARRVLPDATV--TLVGGFRRGKPTGHDVDLLLSHPEEGRERA-------LLGPLVARLEQQGLLLYEQSQPNTFGLEPSGGGSGLDRFE-----RCFAIVR--LARALRVDMVVAPRGQFAFALLGWTGSRHFERELRRFASHQRGLALSSHGLYDPXRELFLPA------ASEEEIFQLLGLDYIPPAER 384
BLAST of mRNA_P-wetherbeei_contig11419.1.1 vs. uniprot
Match: A0A3Q2XHD5_HIPCM (DNA-directed DNA/RNA polymerase mu n=1 Tax=Hippocampus comes TaxID=109280 RepID=A0A3Q2XHD5_HIPCM) HSP 1 Score: 104 bits (259), Expect = 6.580e-21 Identity = 88/290 (30.34%), Postives = 136/290 (46.90%), Query Frame = 1 Query: 37 YSRLSFYSAVLAVGPAKAAEWFAAGASSVQQAKRLMEEGKLPGVTAAARVTLEWYDDLSAKISRSEVVEIAERARQDVDAAAARVDPTAEVRFTVVGGYRRGNPSSHDVDVLVTL---ARCEGDAAPQPDYVEFR----------HAIEEELGRSGLLRHVF--LSGAFSVQASDQDSPFEKQEIV----GEQRRFALVPGFTGHMRRLDVVVVKPEQYAFGMLSWSGDTLFQRSIREYAEHERKWKFSQNGLVDLEHQQPVPAIVEGKLTTEEAIFKELGLKYIPPEFR 849 + + +A+ VG AA+WF G ++ Q L + G++ +T A + + YDDL+ ++R+E A+ Q V+ A P+A R T+VGG+RRG S HDVD L+T R EG ++E R ++ E G F F + + P +Q+ V GE RR+ V R+D+VV Q+AF +L W+G LF+R +R +A ++ S + L D + ++ + K TEE IF L L+YIPP R Sbjct: 232 FKAMKLLTAIFGVGAKTAAQWFQEGIRNLPQ---LHQSGRV--LTRAQQAGVAHYDDLTQSVTRAE----ADTIGQIVEEAVGAKLPSA--RVTLVGGFRRGKLSGHDVDFLITHPEEGREEGLIPKVVAHLEARDFLLYHKNNRNSYTEASGTPASTMDHFERCFSIFKLPMPEGGEPHSRQDDVALRRGECRRWRAV--------RVDLVVCPFSQFAFALLGWTGSKLFERELRRWATQQKNMSLSSHALYDNKQRKYL------KAATEEEIFAHLSLEYIPPSER 496
BLAST of mRNA_P-wetherbeei_contig11419.1.1 vs. uniprot
Match: A0A4U5VAU8_COLLU (DNA-directed DNA/RNA polymerase mu n=4 Tax=Sciaenidae TaxID=30870 RepID=A0A4U5VAU8_COLLU) HSP 1 Score: 104 bits (259), Expect = 6.730e-21 Identity = 92/298 (30.87%), Postives = 133/298 (44.63%), Query Frame = 1 Query: 10 EGAVDSQRSYSRLSFYSAVLAVGPAKAAEWFAAGASSVQQAKRLMEEGKLPGVTAAARVTLEWYDDLSAKISRSEVVEIAERARQDVDAAAARVDPTAEVRFTVVGGYRRGNPSSHDVDVLVTLARCEGDAAPQPDYVEFRHA--------------IEEELGRSGLLRHVF-LSGAFSVQASDQDSPFEKQEIVGEQRRFALVPGFTGHMRR---LDVVVVKPEQYAFGMLSWSGDTLFQRSIREYAEHERKWKFSQNGLVDLEHQQPVPAIVEGKLTTEEAIFKELGLKYIPPEFR 849 E S+R + L + + VG A W G +QQ K P + A R LE YDD++ +S++E A+ Q V+ A A V P A+V T++GG+RRG S HDVD L+T + P V + + +E E G + ++ FSV +D EK+ Q R A + R +D+VV Q+AF +L W+G LF+R +R +A HE+ S + L D + + A T+EE IF LGL YIPP R Sbjct: 224 ESTKQSER-FKALKVLTGIFGVGAKTADRWIREGIHDLQQLK-----DSRPTLNRAQRAGLEHYDDINQPVSKAE----ADAIGQVVEEAVAAVLPGAQV--TLIGGFRRGKLSGHDVDFLITHPEEGREVGLMPKIVSWLESQGFLLYQKTTRNSYLESEDGPARPCSNMDRFERCFSVFKLSED---EKRRAGQTQSRHASAEDGGRKLWRAVRVDLVVSPISQFAFALLGWTGSKLFERELRRWAGHEKTMSLSSHALYDGTQRTYLRA------TSEEEIFAHLGLDYIPPSER 500
BLAST of mRNA_P-wetherbeei_contig11419.1.1 vs. uniprot
Match: UPI001C2E1C27 (DNA-directed DNA/RNA polymerase mu isoform X2 n=1 Tax=Peromyscus maniculatus bairdii TaxID=230844 RepID=UPI001C2E1C27) HSP 1 Score: 103 bits (258), Expect = 8.030e-21 Identity = 87/290 (30.00%), Postives = 136/290 (46.90%), Query Frame = 1 Query: 19 VDSQRSYSRLSFYSAVLAVGPAKAAEWFAAGASSVQQAKRLMEEGKLPGVTAAARVTLEWYDDLSAKISRSEVVEIAERARQDVDAAAARVDPTAEVRFTVVGGYRRGNPSSHDVDVLVTLARCEGDAAPQPDYVEFRHAIEEELGRSGLL------RHVFLSGAFSVQASDQDSPFEKQEIV---GEQRRFALV----PGFTGHMRRLDVVVVKPEQYAFGMLSWSGDTLFQRSIREYAEHERKWKFSQNGLVDLEHQQPVPAIVEGKLTTEEAIFKELGLKYIPPEFR 849 V S + + ++ + VG A W+ G ++ + + G+ +T + L++Y+DLS + R++ AE +Q V+AA + P A V T+ GG+RRG HDVD L+T +A P + +L R GL+ R SG Q D+ FE+ + + R ALV P R+D+VV Q+ F +L W+G LF+R +R ++ E+ + +GL D E + A T+EE IF+ LGLKY+PPE R Sbjct: 214 VRSSERHQTMKLFTQIFGVGVKTANRWYQEGLRTLDELR-----GQPQRLTQQQKAGLQYYEDLSTPVGRAD----AEALQQLVEAAVRQTLPGATV--TLTGGFRRGKSEGHDVDFLITHPEEGQEAGLLP-------RVMSQLQRQGLVLYHQYHRSHLDSGRLLRQNYTMDA-FERSFCILCLPQPPRAALVGSLQPCPARRAVRVDLVVTPNSQFPFALLGWTGSQLFERELRRFSRQEKGLWLNSHGLFDPERKTFFHA------TSEEDIFRLLGLKYLPPEQR 478
BLAST of mRNA_P-wetherbeei_contig11419.1.1 vs. uniprot
Match: A0A6I9L4I3_PERMB (DNA-directed DNA/RNA polymerase mu n=14 Tax=Cricetidae TaxID=337677 RepID=A0A6I9L4I3_PERMB) HSP 1 Score: 103 bits (258), Expect = 8.680e-21 Identity = 87/290 (30.00%), Postives = 136/290 (46.90%), Query Frame = 1 Query: 19 VDSQRSYSRLSFYSAVLAVGPAKAAEWFAAGASSVQQAKRLMEEGKLPGVTAAARVTLEWYDDLSAKISRSEVVEIAERARQDVDAAAARVDPTAEVRFTVVGGYRRGNPSSHDVDVLVTLARCEGDAAPQPDYVEFRHAIEEELGRSGLL------RHVFLSGAFSVQASDQDSPFEKQEIV---GEQRRFALV----PGFTGHMRRLDVVVVKPEQYAFGMLSWSGDTLFQRSIREYAEHERKWKFSQNGLVDLEHQQPVPAIVEGKLTTEEAIFKELGLKYIPPEFR 849 V S + + ++ + VG A W+ G ++ + + G+ +T + L++Y+DLS + R++ AE +Q V+AA + P A V T+ GG+RRG HDVD L+T +A P + +L R GL+ R SG Q D+ FE+ + + R ALV P R+D+VV Q+ F +L W+G LF+R +R ++ E+ + +GL D E + A T+EE IF+ LGLKY+PPE R Sbjct: 227 VRSSERHQTMKLFTQIFGVGVKTANRWYQEGLRTLDELR-----GQPQRLTQQQKAGLQYYEDLSTPVGRAD----AEALQQLVEAAVRQTLPGATV--TLTGGFRRGKSEGHDVDFLITHPEEGQEAGLLP-------RVMSQLQRQGLVLYHQYHRSHLDSGRLLRQNYTMDA-FERSFCILCLPQPPRAALVGSLQPCPARRAVRVDLVVTPNSQFPFALLGWTGSQLFERELRRFSRQEKGLWLNSHGLFDPERKTFFHA------TSEEDIFRLLGLKYLPPEQR 491
BLAST of mRNA_P-wetherbeei_contig11419.1.1 vs. uniprot
Match: A0A8C4KIM6_DRONO (DNA-directed DNA/RNA polymerase mu n=1 Tax=Dromaius novaehollandiae TaxID=8790 RepID=A0A8C4KIM6_DRONO) HSP 1 Score: 103 bits (257), Expect = 1.560e-20 Identity = 87/281 (30.96%), Postives = 135/281 (48.04%), Query Frame = 1 Query: 10 EGAVDSQRSYSRLSFYSAVLAVGPAKAAEWFAAGASSVQQAKRLMEEGKLPGVTAAARVTLEWYDDLSAKISRSEVVEIAERARQDVDAAAARVDPTAEVRFTVVGGYRRGNPSSHDVDVLVTLARCEGDAAPQPDYVEFRHAIEEELGRSGLLRHVFLS-GAFSVQASDQDSPFEKQEIVGEQRRFALVPGFTGHMRRLDVVVVKPEQYAFGMLSWSGDTLFQRSIREYAEHERKWKFSQNGLVDLEHQQPVPAIVEGKLTTEEAIFKELGLKYIPPEFR 849 E A S+R Y + ++ + VG AA W+ G ++ L G P ++ + L ++DL+ ++ +E +AE R + A RV P A V T+VGG+RRG P+ HDVD+L++ + A + L + GLL + F ++ S S ++ E R FA+V R+D+VV Q+AF +L W+G F+R +R +A H+R S +GL D + +PA +EE IF+ LGL YIPP R Sbjct: 308 EAARRSER-YRTMELFTGIFGVGTQTAARWYRQGLRTLDD---LRAAG--PRLSRQQQAGLRHWEDLATPVTLAEAEAVAELVRAE----ARRVLPDATV--TLVGGFRRGKPTGHDVDLLLSHPEEGRERA-------LLGPLVARLEQQGLLLYEQSQPNTFGLEPSGGGSGLDRFE-----RCFAIVR--LARALRVDMVVAPRGQFAFALLGWTGSRHFERELRRFASHQRGLALSSHGLYDPXRELFLPA------ASEEEIFQLLGLDYIPPAER 556
BLAST of mRNA_P-wetherbeei_contig11419.1.1 vs. uniprot
Match: G3NAV1_GASAC (DNA-directed DNA/RNA polymerase mu n=4 Tax=Gasterosteidae TaxID=69291 RepID=G3NAV1_GASAC) HSP 1 Score: 103 bits (256), Expect = 1.730e-20 Identity = 87/294 (29.59%), Postives = 131/294 (44.56%), Query Frame = 1 Query: 16 AVDSQRSYSRLSFYSAVLAVGPAKAAEWFAAGASSVQQAKRLMEEGKLPGVTAAARVTLEWYDDLSAKISRSEVVEIAERARQDVDAAAARVDPTAEVRFTVVGGYRRGNPSSHDVDVLVTLARCEGDAAPQPDYVEFRHAIEEELGRSGLLRHVFLSGAFSVQASDQDSP-----------FEKQEIVGEQRRFALVPGFTGHMR-----RLDVVVVKPEQYAFGMLSWSGDTLFQRSIREYAEHERKWKFSQNGLVDLEHQQPVPAIVEGKLTTEEAIFKELGLKYIPPEFR 849 A+ + L + + VG A W G +++Q L + G P + A R L YDDL+ + R+E +A V+AAA V P A R T++GG+RRG + HDVD L+T +A P V + L G L + + ++A++ + F ++ E R G G R R+D+VV Q+AF +L W+G LF+R +R +A HE S + L D + + A ++EE IF LGL+YIPP R Sbjct: 237 ALRRSERFKALKVLTGIFGVGVKTAGRWIGEGILTLRQ---LRDSG--PTLNRAQRAGLRHYDDLNRPVGRAEAAAVA----AVVEAAAGSVLPGA--RVTLIGGFRRGKQTGHDVDFLITHPEEGREAGLMPKLVSW-------LDSQGFLLYQKTNSNSYLEAAEGPARPASNMDRFERCFSVFKLPEEAGRGGAGAGGEGGPRPWRAVRVDLVVSPVSQFAFALLGWTGSKLFERELRRWAGHEMNMCLSSHALYDHRQSRYLRA------SSEEEIFAHLGLEYIPPSER 506
BLAST of mRNA_P-wetherbeei_contig11419.1.1 vs. uniprot
Match: A0A6F9DPQ0_9ASCI (DNA-directed DNA/RNA polymerase mu-like n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DPQ0_9ASCI) HSP 1 Score: 102 bits (254), Expect = 2.770e-20 Identity = 79/287 (27.53%), Postives = 137/287 (47.74%), Query Frame = 1 Query: 37 YSRLSFYSAVLAVGPAKAAEWFAAGASSVQQAKRLMEEGKLPGVTAAARVTLEWYDDLSAKISRSEVVEIAERARQDVDAAAARVDPTAEVRFTVVGGYRRGNPSSHDVDVLVTLARCEGDAAPQPDYVEFRHAIEEELGRSGLLRHVFL-------SGAFSVQASDQDSPFEKQEIVGEQRRFALVPGFT--GHMR-----RLDVVVVKPEQYAFGMLSWSGDTLFQRSIREYAEHERKWKFSQNGLVDLEHQQPVPAIVEGKLTTEEAIFKELGLKYIPPEFRFC 855 Y + + + VGP+ A +WF +G + K L + V LE+Y+DL+ +S+ E + ++E + ++ ++ T+VGG+RRG P+ HDVD+L++ P E +H + + + + L+ FL SG Q + + S ++ E + L P T G+ + R+D++VV +QY F +L W+G F+R IR Y + E+K + +G+ + +Q + A TEE IFK+L L++ PP R C Sbjct: 230 YKTMKLFCGIWGVGPSTAKKWFDSGHRHLNDIKNLK-------LNKDQTVGLEYYEDLNTPVSKDEALCVSEIVKTVC------MEIKKDLLVTLVGGFRRGKPAGHDVDLLIS----------HPTQGEEKHVLPKVMEK---LKDNFLYTDKKMSSGTTHPQYTGKSSTMDQFEKCFSIFKLDL-PKSTKNGNEKPWKAIRVDLIVVPTDQYPFALLGWTGTKHFEREIRRYTKTEKKVVLTSHGMYTTDTKQSIEA------KTEEEIFKKLDLEFRPPSERCC 483
BLAST of mRNA_P-wetherbeei_contig11419.1.1 vs. uniprot
Match: UPI0003C8CD76 (DNA-directed DNA/RNA polymerase mu isoform X2 n=1 Tax=Tupaia chinensis TaxID=246437 RepID=UPI0003C8CD76) HSP 1 Score: 102 bits (253), Expect = 3.670e-20 Identity = 79/281 (28.11%), Postives = 130/281 (46.26%), Query Frame = 1 Query: 19 VDSQRSYSRLSFYSAVLAVGPAKAAEWFAAGASSVQQAKRLMEEGKLPGVTAAARVTLEWYDDLSAKISRSEVVEIAERARQDVDAAAARVDPTAEVRFTVVGGYRRGNPSSHDVDVLVTLARCEGDAAPQPDYV----EFRHAIEEELGRSGLLRHVFLSGAFSVQASDQDSPFEKQEIVGEQRRFALVPGFTGHMRRLDVVVVKPEQYAFGMLSWSGDTLFQRSIREYAEHERKWKFSQNGLVDLEHQQPVPAIVEGKLTTEEAIFKELGLKYIPPEFR 849 + S Y + ++ V VG A W+ G ++ ++ + +T R L+++ DLS + R + AE +Q V+ A + P A V T+ GG+RRG HDVD+L++ + P + + + ++ R G H+ V+ FE+ + R PG +R +D+VVV Q+ F +L W+G LF+R +R ++ ER + + GL D E ++ A T+EE IF+ LGLKY+PPE R Sbjct: 225 IQSSDRYQTMKLFTQVFGVGVKTANRWYQEGLRTLDDLRKQSQR-----LTRQQRAGLQYHQDLSTPVQRPD----AEALQQVVEVAVRQTLPGATV--TLTGGFRRGKLQGHDVDLLISHPEEGQEVGLLPQLLLRLQDQGLLMYQQYQRGGEPSHI-------VRQGHTMDAFERSFCIF---RLPQPPGAWKAVR-VDLVVVPISQFPFALLGWTGSQLFERELRRFSHQERGLRLTSQGLFDPEQKRVFHA------TSEEDIFRHLGLKYLPPEQR 477 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11419.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig11419.1.1 >prot_P-wetherbeei_contig11419.1.1 ID=prot_P-wetherbeei_contig11419.1.1|Name=mRNA_P-wetherbeei_contig11419.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=239bp MEEGKLPGVTAAARVTLEWYDDLSAKISRSEVVEIAERARQDVDAAAARVback to top mRNA from alignment at P-wetherbeei_contig11419:28..1908- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig11419.1.1 ID=mRNA_P-wetherbeei_contig11419.1.1|Name=mRNA_P-wetherbeei_contig11419.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1881bp|location=Sequence derived from alignment at P-wetherbeei_contig11419:28..1908- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig11419:28..1908- >mRNA_P-wetherbeei_contig11419.1.1 ID=mRNA_P-wetherbeei_contig11419.1.1|Name=mRNA_P-wetherbeei_contig11419.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=717bp|location=Sequence derived from alignment at P-wetherbeei_contig11419:28..1908- (Phaeothamnion wetherbeei SAG_119_79)back to top |