mRNA_P-wetherbeei_contig11419.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11419.1.1
Unique NamemRNA_P-wetherbeei_contig11419.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11419.1.1 vs. uniprot
Match: D8LNK4_ECTSI (DNA polymerase mu n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK4_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 3.170e-27
Identity = 90/300 (30.00%), Postives = 133/300 (44.33%), Query Frame = 1
Query:   64 VLAVGPAKAAEWFAAGASSVQQAKRLM------EEG--KLPGVTAAARVTLEWYDDLSAKISRSEVVEIAERARQDVDAAAARVDPTAEVRFTVVGGYRRGNPSSHDVDVLVTLARCEGDAAPQPDYVE-----------------------------FRHAIEEELGRSGLLRHVFLSGAFSVQASDQDSPFEKQEIVGEQRRFALVPGFTGHMRRLDVVVVKPEQYAFGMLSWSGDTLFQRSIREYAEHERKWKFSQNGLVDLEHQQPVPAIVEGKLTTEEAIFKELGLKYIPPEFRF 852
            V  VG   A +W+  G  SV+ A+R +       EG  K P +     + L+ + D+   I R EVV IA+  R++ +      DP   + F V GG+RRG  + HDVDVLV+  R  G+   Q  +VE                             F   ++E L   G L      G        +     + ++  E+   AL     G   R+D+V V   Q+ F +L WSG  +F++ +R Y E + ++K SQ G+      +PV  IV     TEE IF+ LGL+YIPP  R+
Sbjct:  291 VHGVGSRTAKDWYNRGIRSVEDARRTLLPNDDDTEGDEKRPNLKPEVVMGLKHFHDMQVPIGRDEVVGIADEVREEAERFGRERDPEGTLLFEVCGGFRRGKETLHDVDVLVSFRRGNGEPGHQ-GFVEALRALDGYLVEGEQIVGAEVKAFEDLEYFFVEGLKERLMERGKLCATLYQGQMGGFTKAKGGQAPQPKLEREEVLMALWQ-LPGRKCRIDIVQVASSQWPFALLGWSGTVMFEKDVRRYTEEQTEYKLSQKGVTIRATDEPVTDIVS--FQTEEDIFRFLGLEYIPPHLRW 586          
BLAST of mRNA_P-wetherbeei_contig11419.1.1 vs. uniprot
Match: UPI000E1E930D (DNA-directed DNA/RNA polymerase mu n=1 Tax=Dromaius novaehollandiae TaxID=8790 RepID=UPI000E1E930D)

HSP 1 Score: 103 bits (257), Expect = 4.770e-21
Identity = 87/281 (30.96%), Postives = 135/281 (48.04%), Query Frame = 1
Query:   10 EGAVDSQRSYSRLSFYSAVLAVGPAKAAEWFAAGASSVQQAKRLMEEGKLPGVTAAARVTLEWYDDLSAKISRSEVVEIAERARQDVDAAAARVDPTAEVRFTVVGGYRRGNPSSHDVDVLVTLARCEGDAAPQPDYVEFRHAIEEELGRSGLLRHVFLS-GAFSVQASDQDSPFEKQEIVGEQRRFALVPGFTGHMRRLDVVVVKPEQYAFGMLSWSGDTLFQRSIREYAEHERKWKFSQNGLVDLEHQQPVPAIVEGKLTTEEAIFKELGLKYIPPEFR 849
            E A  S+R Y  +  ++ +  VG   AA W+  G  ++     L   G  P ++   +  L  ++DL+  ++ +E   +AE  R +    A RV P A V  T+VGG+RRG P+ HDVD+L++      + A           +   L + GLL +       F ++ S   S  ++ E     R FA+V        R+D+VV    Q+AF +L W+G   F+R +R +A H+R    S +GL D   +  +PA       +EE IF+ LGL YIPP  R
Sbjct:  136 EAARRSER-YRTMELFTGIFGVGTQTAARWYRQGLRTLDD---LRAAG--PRLSRQQQAGLRHWEDLATPVTLAEAEAVAELVRAE----ARRVLPDATV--TLVGGFRRGKPTGHDVDLLLSHPEEGRERA-------LLGPLVARLEQQGLLLYEQSQPNTFGLEPSGGGSGLDRFE-----RCFAIVR--LARALRVDMVVAPRGQFAFALLGWTGSRHFERELRRFASHQRGLALSSHGLYDPXRELFLPA------ASEEEIFQLLGLDYIPPAER 384          
BLAST of mRNA_P-wetherbeei_contig11419.1.1 vs. uniprot
Match: A0A3Q2XHD5_HIPCM (DNA-directed DNA/RNA polymerase mu n=1 Tax=Hippocampus comes TaxID=109280 RepID=A0A3Q2XHD5_HIPCM)

HSP 1 Score: 104 bits (259), Expect = 6.580e-21
Identity = 88/290 (30.34%), Postives = 136/290 (46.90%), Query Frame = 1
Query:   37 YSRLSFYSAVLAVGPAKAAEWFAAGASSVQQAKRLMEEGKLPGVTAAARVTLEWYDDLSAKISRSEVVEIAERARQDVDAAAARVDPTAEVRFTVVGGYRRGNPSSHDVDVLVTL---ARCEGDAAPQPDYVEFR----------HAIEEELGRSGLLRHVF--LSGAFSVQASDQDSPFEKQEIV----GEQRRFALVPGFTGHMRRLDVVVVKPEQYAFGMLSWSGDTLFQRSIREYAEHERKWKFSQNGLVDLEHQQPVPAIVEGKLTTEEAIFKELGLKYIPPEFR 849
            +  +   +A+  VG   AA+WF  G  ++ Q   L + G++  +T A +  +  YDDL+  ++R+E    A+   Q V+ A     P+A  R T+VGG+RRG  S HDVD L+T     R EG       ++E R          ++  E  G        F      F +   +   P  +Q+ V    GE RR+  V        R+D+VV    Q+AF +L W+G  LF+R +R +A  ++    S + L D + ++ +      K  TEE IF  L L+YIPP  R
Sbjct:  232 FKAMKLLTAIFGVGAKTAAQWFQEGIRNLPQ---LHQSGRV--LTRAQQAGVAHYDDLTQSVTRAE----ADTIGQIVEEAVGAKLPSA--RVTLVGGFRRGKLSGHDVDFLITHPEEGREEGLIPKVVAHLEARDFLLYHKNNRNSYTEASGTPASTMDHFERCFSIFKLPMPEGGEPHSRQDDVALRRGECRRWRAV--------RVDLVVCPFSQFAFALLGWTGSKLFERELRRWATQQKNMSLSSHALYDNKQRKYL------KAATEEEIFAHLSLEYIPPSER 496          
BLAST of mRNA_P-wetherbeei_contig11419.1.1 vs. uniprot
Match: A0A4U5VAU8_COLLU (DNA-directed DNA/RNA polymerase mu n=4 Tax=Sciaenidae TaxID=30870 RepID=A0A4U5VAU8_COLLU)

HSP 1 Score: 104 bits (259), Expect = 6.730e-21
Identity = 92/298 (30.87%), Postives = 133/298 (44.63%), Query Frame = 1
Query:   10 EGAVDSQRSYSRLSFYSAVLAVGPAKAAEWFAAGASSVQQAKRLMEEGKLPGVTAAARVTLEWYDDLSAKISRSEVVEIAERARQDVDAAAARVDPTAEVRFTVVGGYRRGNPSSHDVDVLVTLARCEGDAAPQPDYVEFRHA--------------IEEELGRSGLLRHVF-LSGAFSVQASDQDSPFEKQEIVGEQRRFALVPGFTGHMRR---LDVVVVKPEQYAFGMLSWSGDTLFQRSIREYAEHERKWKFSQNGLVDLEHQQPVPAIVEGKLTTEEAIFKELGLKYIPPEFR 849
            E    S+R +  L   + +  VG   A  W   G   +QQ K        P +  A R  LE YDD++  +S++E    A+   Q V+ A A V P A+V  T++GG+RRG  S HDVD L+T      +    P  V +  +              +E E G +    ++      FSV    +D   EK+     Q R A        + R   +D+VV    Q+AF +L W+G  LF+R +R +A HE+    S + L D   +  + A      T+EE IF  LGL YIPP  R
Sbjct:  224 ESTKQSER-FKALKVLTGIFGVGAKTADRWIREGIHDLQQLK-----DSRPTLNRAQRAGLEHYDDINQPVSKAE----ADAIGQVVEEAVAAVLPGAQV--TLIGGFRRGKLSGHDVDFLITHPEEGREVGLMPKIVSWLESQGFLLYQKTTRNSYLESEDGPARPCSNMDRFERCFSVFKLSED---EKRRAGQTQSRHASAEDGGRKLWRAVRVDLVVSPISQFAFALLGWTGSKLFERELRRWAGHEKTMSLSSHALYDGTQRTYLRA------TSEEEIFAHLGLDYIPPSER 500          
BLAST of mRNA_P-wetherbeei_contig11419.1.1 vs. uniprot
Match: UPI001C2E1C27 (DNA-directed DNA/RNA polymerase mu isoform X2 n=1 Tax=Peromyscus maniculatus bairdii TaxID=230844 RepID=UPI001C2E1C27)

HSP 1 Score: 103 bits (258), Expect = 8.030e-21
Identity = 87/290 (30.00%), Postives = 136/290 (46.90%), Query Frame = 1
Query:   19 VDSQRSYSRLSFYSAVLAVGPAKAAEWFAAGASSVQQAKRLMEEGKLPGVTAAARVTLEWYDDLSAKISRSEVVEIAERARQDVDAAAARVDPTAEVRFTVVGGYRRGNPSSHDVDVLVTLARCEGDAAPQPDYVEFRHAIEEELGRSGLL------RHVFLSGAFSVQASDQDSPFEKQEIV---GEQRRFALV----PGFTGHMRRLDVVVVKPEQYAFGMLSWSGDTLFQRSIREYAEHERKWKFSQNGLVDLEHQQPVPAIVEGKLTTEEAIFKELGLKYIPPEFR 849
            V S   +  +  ++ +  VG   A  W+  G  ++ + +     G+   +T   +  L++Y+DLS  + R++    AE  +Q V+AA  +  P A V  T+ GG+RRG    HDVD L+T      +A   P        +  +L R GL+      R    SG    Q    D+ FE+   +    +  R ALV    P       R+D+VV    Q+ F +L W+G  LF+R +R ++  E+    + +GL D E +    A      T+EE IF+ LGLKY+PPE R
Sbjct:  214 VRSSERHQTMKLFTQIFGVGVKTANRWYQEGLRTLDELR-----GQPQRLTQQQKAGLQYYEDLSTPVGRAD----AEALQQLVEAAVRQTLPGATV--TLTGGFRRGKSEGHDVDFLITHPEEGQEAGLLP-------RVMSQLQRQGLVLYHQYHRSHLDSGRLLRQNYTMDA-FERSFCILCLPQPPRAALVGSLQPCPARRAVRVDLVVTPNSQFPFALLGWTGSQLFERELRRFSRQEKGLWLNSHGLFDPERKTFFHA------TSEEDIFRLLGLKYLPPEQR 478          
BLAST of mRNA_P-wetherbeei_contig11419.1.1 vs. uniprot
Match: A0A6I9L4I3_PERMB (DNA-directed DNA/RNA polymerase mu n=14 Tax=Cricetidae TaxID=337677 RepID=A0A6I9L4I3_PERMB)

HSP 1 Score: 103 bits (258), Expect = 8.680e-21
Identity = 87/290 (30.00%), Postives = 136/290 (46.90%), Query Frame = 1
Query:   19 VDSQRSYSRLSFYSAVLAVGPAKAAEWFAAGASSVQQAKRLMEEGKLPGVTAAARVTLEWYDDLSAKISRSEVVEIAERARQDVDAAAARVDPTAEVRFTVVGGYRRGNPSSHDVDVLVTLARCEGDAAPQPDYVEFRHAIEEELGRSGLL------RHVFLSGAFSVQASDQDSPFEKQEIV---GEQRRFALV----PGFTGHMRRLDVVVVKPEQYAFGMLSWSGDTLFQRSIREYAEHERKWKFSQNGLVDLEHQQPVPAIVEGKLTTEEAIFKELGLKYIPPEFR 849
            V S   +  +  ++ +  VG   A  W+  G  ++ + +     G+   +T   +  L++Y+DLS  + R++    AE  +Q V+AA  +  P A V  T+ GG+RRG    HDVD L+T      +A   P        +  +L R GL+      R    SG    Q    D+ FE+   +    +  R ALV    P       R+D+VV    Q+ F +L W+G  LF+R +R ++  E+    + +GL D E +    A      T+EE IF+ LGLKY+PPE R
Sbjct:  227 VRSSERHQTMKLFTQIFGVGVKTANRWYQEGLRTLDELR-----GQPQRLTQQQKAGLQYYEDLSTPVGRAD----AEALQQLVEAAVRQTLPGATV--TLTGGFRRGKSEGHDVDFLITHPEEGQEAGLLP-------RVMSQLQRQGLVLYHQYHRSHLDSGRLLRQNYTMDA-FERSFCILCLPQPPRAALVGSLQPCPARRAVRVDLVVTPNSQFPFALLGWTGSQLFERELRRFSRQEKGLWLNSHGLFDPERKTFFHA------TSEEDIFRLLGLKYLPPEQR 491          
BLAST of mRNA_P-wetherbeei_contig11419.1.1 vs. uniprot
Match: A0A8C4KIM6_DRONO (DNA-directed DNA/RNA polymerase mu n=1 Tax=Dromaius novaehollandiae TaxID=8790 RepID=A0A8C4KIM6_DRONO)

HSP 1 Score: 103 bits (257), Expect = 1.560e-20
Identity = 87/281 (30.96%), Postives = 135/281 (48.04%), Query Frame = 1
Query:   10 EGAVDSQRSYSRLSFYSAVLAVGPAKAAEWFAAGASSVQQAKRLMEEGKLPGVTAAARVTLEWYDDLSAKISRSEVVEIAERARQDVDAAAARVDPTAEVRFTVVGGYRRGNPSSHDVDVLVTLARCEGDAAPQPDYVEFRHAIEEELGRSGLLRHVFLS-GAFSVQASDQDSPFEKQEIVGEQRRFALVPGFTGHMRRLDVVVVKPEQYAFGMLSWSGDTLFQRSIREYAEHERKWKFSQNGLVDLEHQQPVPAIVEGKLTTEEAIFKELGLKYIPPEFR 849
            E A  S+R Y  +  ++ +  VG   AA W+  G  ++     L   G  P ++   +  L  ++DL+  ++ +E   +AE  R +    A RV P A V  T+VGG+RRG P+ HDVD+L++      + A           +   L + GLL +       F ++ S   S  ++ E     R FA+V        R+D+VV    Q+AF +L W+G   F+R +R +A H+R    S +GL D   +  +PA       +EE IF+ LGL YIPP  R
Sbjct:  308 EAARRSER-YRTMELFTGIFGVGTQTAARWYRQGLRTLDD---LRAAG--PRLSRQQQAGLRHWEDLATPVTLAEAEAVAELVRAE----ARRVLPDATV--TLVGGFRRGKPTGHDVDLLLSHPEEGRERA-------LLGPLVARLEQQGLLLYEQSQPNTFGLEPSGGGSGLDRFE-----RCFAIVR--LARALRVDMVVAPRGQFAFALLGWTGSRHFERELRRFASHQRGLALSSHGLYDPXRELFLPA------ASEEEIFQLLGLDYIPPAER 556          
BLAST of mRNA_P-wetherbeei_contig11419.1.1 vs. uniprot
Match: G3NAV1_GASAC (DNA-directed DNA/RNA polymerase mu n=4 Tax=Gasterosteidae TaxID=69291 RepID=G3NAV1_GASAC)

HSP 1 Score: 103 bits (256), Expect = 1.730e-20
Identity = 87/294 (29.59%), Postives = 131/294 (44.56%), Query Frame = 1
Query:   16 AVDSQRSYSRLSFYSAVLAVGPAKAAEWFAAGASSVQQAKRLMEEGKLPGVTAAARVTLEWYDDLSAKISRSEVVEIAERARQDVDAAAARVDPTAEVRFTVVGGYRRGNPSSHDVDVLVTLARCEGDAAPQPDYVEFRHAIEEELGRSGLLRHVFLSGAFSVQASDQDSP-----------FEKQEIVGEQRRFALVPGFTGHMR-----RLDVVVVKPEQYAFGMLSWSGDTLFQRSIREYAEHERKWKFSQNGLVDLEHQQPVPAIVEGKLTTEEAIFKELGLKYIPPEFR 849
            A+     +  L   + +  VG   A  W   G  +++Q   L + G  P +  A R  L  YDDL+  + R+E   +A      V+AAA  V P A  R T++GG+RRG  + HDVD L+T      +A   P  V +       L   G L +   +    ++A++  +            F   ++  E  R     G  G  R     R+D+VV    Q+AF +L W+G  LF+R +R +A HE     S + L D    + + A      ++EE IF  LGL+YIPP  R
Sbjct:  237 ALRRSERFKALKVLTGIFGVGVKTAGRWIGEGILTLRQ---LRDSG--PTLNRAQRAGLRHYDDLNRPVGRAEAAAVA----AVVEAAAGSVLPGA--RVTLIGGFRRGKQTGHDVDFLITHPEEGREAGLMPKLVSW-------LDSQGFLLYQKTNSNSYLEAAEGPARPASNMDRFERCFSVFKLPEEAGRGGAGAGGEGGPRPWRAVRVDLVVSPVSQFAFALLGWTGSKLFERELRRWAGHEMNMCLSSHALYDHRQSRYLRA------SSEEEIFAHLGLEYIPPSER 506          
BLAST of mRNA_P-wetherbeei_contig11419.1.1 vs. uniprot
Match: A0A6F9DPQ0_9ASCI (DNA-directed DNA/RNA polymerase mu-like n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DPQ0_9ASCI)

HSP 1 Score: 102 bits (254), Expect = 2.770e-20
Identity = 79/287 (27.53%), Postives = 137/287 (47.74%), Query Frame = 1
Query:   37 YSRLSFYSAVLAVGPAKAAEWFAAGASSVQQAKRLMEEGKLPGVTAAARVTLEWYDDLSAKISRSEVVEIAERARQDVDAAAARVDPTAEVRFTVVGGYRRGNPSSHDVDVLVTLARCEGDAAPQPDYVEFRHAIEEELGRSGLLRHVFL-------SGAFSVQASDQDSPFEKQEIVGEQRRFALVPGFT--GHMR-----RLDVVVVKPEQYAFGMLSWSGDTLFQRSIREYAEHERKWKFSQNGLVDLEHQQPVPAIVEGKLTTEEAIFKELGLKYIPPEFRFC 855
            Y  +  +  +  VGP+ A +WF +G   +   K L        +     V LE+Y+DL+  +S+ E + ++E  +         ++   ++  T+VGG+RRG P+ HDVD+L++           P   E +H + + + +   L+  FL       SG    Q + + S  ++ E      +  L P  T  G+ +     R+D++VV  +QY F +L W+G   F+R IR Y + E+K   + +G+   + +Q + A       TEE IFK+L L++ PP  R C
Sbjct:  230 YKTMKLFCGIWGVGPSTAKKWFDSGHRHLNDIKNLK-------LNKDQTVGLEYYEDLNTPVSKDEALCVSEIVKTVC------MEIKKDLLVTLVGGFRRGKPAGHDVDLLIS----------HPTQGEEKHVLPKVMEK---LKDNFLYTDKKMSSGTTHPQYTGKSSTMDQFEKCFSIFKLDL-PKSTKNGNEKPWKAIRVDLIVVPTDQYPFALLGWTGTKHFEREIRRYTKTEKKVVLTSHGMYTTDTKQSIEA------KTEEEIFKKLDLEFRPPSERCC 483          
BLAST of mRNA_P-wetherbeei_contig11419.1.1 vs. uniprot
Match: UPI0003C8CD76 (DNA-directed DNA/RNA polymerase mu isoform X2 n=1 Tax=Tupaia chinensis TaxID=246437 RepID=UPI0003C8CD76)

HSP 1 Score: 102 bits (253), Expect = 3.670e-20
Identity = 79/281 (28.11%), Postives = 130/281 (46.26%), Query Frame = 1
Query:   19 VDSQRSYSRLSFYSAVLAVGPAKAAEWFAAGASSVQQAKRLMEEGKLPGVTAAARVTLEWYDDLSAKISRSEVVEIAERARQDVDAAAARVDPTAEVRFTVVGGYRRGNPSSHDVDVLVTLARCEGDAAPQPDYV----EFRHAIEEELGRSGLLRHVFLSGAFSVQASDQDSPFEKQEIVGEQRRFALVPGFTGHMRRLDVVVVKPEQYAFGMLSWSGDTLFQRSIREYAEHERKWKFSQNGLVDLEHQQPVPAIVEGKLTTEEAIFKELGLKYIPPEFR 849
            + S   Y  +  ++ V  VG   A  W+  G  ++   ++  +      +T   R  L+++ DLS  + R +    AE  +Q V+ A  +  P A V  T+ GG+RRG    HDVD+L++      +    P  +    +    + ++  R G   H+       V+       FE+   +    R    PG    +R +D+VVV   Q+ F +L W+G  LF+R +R ++  ER  + +  GL D E ++   A      T+EE IF+ LGLKY+PPE R
Sbjct:  225 IQSSDRYQTMKLFTQVFGVGVKTANRWYQEGLRTLDDLRKQSQR-----LTRQQRAGLQYHQDLSTPVQRPD----AEALQQVVEVAVRQTLPGATV--TLTGGFRRGKLQGHDVDLLISHPEEGQEVGLLPQLLLRLQDQGLLMYQQYQRGGEPSHI-------VRQGHTMDAFERSFCIF---RLPQPPGAWKAVR-VDLVVVPISQFPFALLGWTGSQLFERELRRFSHQERGLRLTSQGLFDPEQKRVFHA------TSEEDIFRHLGLKYLPPEQR 477          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11419.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNK4_ECTSI3.170e-2730.00DNA polymerase mu n=1 Tax=Ectocarpus siliculosus T... [more]
UPI000E1E930D4.770e-2130.96DNA-directed DNA/RNA polymerase mu n=1 Tax=Dromaiu... [more]
A0A3Q2XHD5_HIPCM6.580e-2130.34DNA-directed DNA/RNA polymerase mu n=1 Tax=Hippoca... [more]
A0A4U5VAU8_COLLU6.730e-2130.87DNA-directed DNA/RNA polymerase mu n=4 Tax=Sciaeni... [more]
UPI001C2E1C278.030e-2130.00DNA-directed DNA/RNA polymerase mu isoform X2 n=1 ... [more]
A0A6I9L4I3_PERMB8.680e-2130.00DNA-directed DNA/RNA polymerase mu n=14 Tax=Cricet... [more]
A0A8C4KIM6_DRONO1.560e-2030.96DNA-directed DNA/RNA polymerase mu n=1 Tax=Dromaiu... [more]
G3NAV1_GASAC1.730e-2029.59DNA-directed DNA/RNA polymerase mu n=4 Tax=Gastero... [more]
A0A6F9DPQ0_9ASCI2.770e-2027.53DNA-directed DNA/RNA polymerase mu-like n=1 Tax=Ph... [more]
UPI0003C8CD763.670e-2028.11DNA-directed DNA/RNA polymerase mu isoform X2 n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11419contigP-wetherbeei_contig11419:28..1908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LNK4
Preferred nameDNTT
PFAMsBRCT,DNA_pol_B_palm,DNA_pol_B_thumb,DNA_pol_lambd_f,HHH_8
Model size1114
Max annot lvl2759|Eukaryota
KEGG koko:K00977,ko:K03512,ko:K03513,ko:K06636,ko:K10981
KEGG Pathwayko03410,ko03450,ko04110,ko04111,ko04113,ko04114,ko04640,map03410,map03450,map04110,map04111,map04113,map04114,map04640
KEGG ModuleM00296
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000278,GO:0000726,GO:0000731,GO:0000785,GO:0000790,GO:0000791,GO:0001775,GO:0002200,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002521,GO:0002566,GO:0003674,GO:0003824,GO:0003887,GO:0003896,GO:0003899,GO:0003912,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006269,GO:0006281,GO:0006284,GO:0006287,GO:0006301,GO:0006302,GO:0006303,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0007275,GO:0007584,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009605,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0014070,GO:0014074,GO:0016070,GO:0016363,GO:0016445,GO:0016446,GO:0016740,GO:0016772,GO:0016779,GO:0016829,GO:0016835,GO:0018130,GO:0019438,GO:0019985,GO:0022402,GO:0030097,GO:0030098,GO:0030154,GO:0030183,GO:0031667,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0033198,GO:0033260,GO:0033554,GO:0034061,GO:0034062,GO:0034399,GO:0034641,GO:0034645,GO:0034654,GO:0042113,GO:0042221,GO:0042276,GO:0042493,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0045321,GO:0046483,GO:0046649,GO:0046683,GO:0048513,GO:0048534,GO:0048731,GO:0048856,GO:0048869,GO:0050896,GO:0051575,GO:0051716,GO:0061674,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0097747,GO:0140097,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1901698,GO:1901700,GO:1902969,GO:1903047,GO:1990506
Exons4
Evalue2.82e-26
EggNOG OGsCOG1796@1|root,KOG2534@2759|Eukaryota
Ec32 ortholog descriptionDNA polymerase mu
Ec32 orthologEc-00_006320.1
EC2.7.7.31,2.7.7.7
DescriptionDNA polymerase
Cds size717
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03036,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11419.1.1prot_P-wetherbeei_contig11419.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11419 284..1767 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185910.8725765-UTR-P-wetherbeei_contig11419:27..2831683185910.8725765-UTR-P-wetherbeei_contig11419:27..283Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11419 28..283 -
1683185910.9193532-UTR-P-wetherbeei_contig11419:1767..19081683185910.9193532-UTR-P-wetherbeei_contig11419:1767..1908Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11419 1768..1908 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185910.8846307-CDS-P-wetherbeei_contig11419:283..4521683185910.8846307-CDS-P-wetherbeei_contig11419:283..452Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11419 284..452 -
1683185910.8972704-CDS-P-wetherbeei_contig11419:697..7991683185910.8972704-CDS-P-wetherbeei_contig11419:697..799Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11419 698..799 -
1683185910.904661-CDS-P-wetherbeei_contig11419:1084..14211683185910.904661-CDS-P-wetherbeei_contig11419:1084..1421Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11419 1085..1421 -
1683185910.9120207-CDS-P-wetherbeei_contig11419:1658..17671683185910.9120207-CDS-P-wetherbeei_contig11419:1658..1767Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11419 1659..1767 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11419.1.1

>prot_P-wetherbeei_contig11419.1.1 ID=prot_P-wetherbeei_contig11419.1.1|Name=mRNA_P-wetherbeei_contig11419.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=239bp
MEEGKLPGVTAAARVTLEWYDDLSAKISRSEVVEIAERARQDVDAAAARV
DPTAEVRFTVVGGYRRGNPSSHDVDVLVTLARCEGDAAPQPDYVEFRHAI
EEELGRSGLLRHVFLSGAFSVQASDQDSPFEKQEIVGEQRRFALVPGFTG
HMRRLDVVVVKPEQYAFGMLSWSGDTLFQRSIREYAEHERKWKFSQNGLV
DLEHQQPVPAIVEGKLTTEEAIFKELGLKYIPPEFRFC*
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mRNA from alignment at P-wetherbeei_contig11419:28..1908-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11419.1.1 ID=mRNA_P-wetherbeei_contig11419.1.1|Name=mRNA_P-wetherbeei_contig11419.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1881bp|location=Sequence derived from alignment at P-wetherbeei_contig11419:28..1908- (Phaeothamnion wetherbeei SAG_119_79)
TTCTTTGGGGAGGGAGCAGTAGACTCACAACGCAGCTACTCTCGTTTGTC ATTTTATTCTGCTGTGTTAGCAGTCGGACCCGCCAAGGCTGCCGAGTGGT TCGCCGCGGGCGCCAGCAGCGTGCAGCAGGCGAAGCGGCTGATGGAGGAG GGCAAGCTCCCGGGTGTGACGGCGGCGGCGCGCGTGACGCTCGAATGGTA CGACGACCTCTCCGCCAAGATTTCGCGCAGCGAGGTCGTTGAGATCGCCG GTAAAAATAAAGTATAAAATAGAATTGCTTTTTGCTTGCCTGCGGGGGGG CGAGTGCGAGTGGGAGATATGCGTGTCGGGCGGCTGGATTCTCCGTTTCA GCTTTCGGCGATCGCTGTAAGTAAATATTTGTCTTACAAGGGGCTGAGTT TCTTTATGCTTGCGCTACCGTGCTGCAACTGCTGGACATGCTGACCCGTG TCTCTCTCCCACCAATCGCTCGCTTCGGCGGTGACAGAACGGGCGCGCCA GGATGTCGACGCGGCGGCCGCCCGTGTCGACCCGACAGCCGAGGTGCGCT TCACGGTGGTCGGCGGCTATCGCCGCGGCAACCCGAGCAGCCATGACGTC GACGTCCTGGTGACGTTGGCGCGCTGCGAGGGCGATGCCGCGCCGCAGCC CGATTACGTCGAATTCCGCCATGCCATCGAGGAGGAGCTGGGCCGGTCGG GCTTGCTGCGTCACGTCTTCTTGTCGGGCGCCTTCTCCGTGCAGGCGTCC GACCAGGATTCGCCCTTTGAGAAGCAAGAGATTGTGGGTGAACAGCGGCG GTTCGCTTTAGTTCCTGGTTTCACGTGGACGGAAACGGGAACCTTTTGGT CGGCCGGCGCTGCGTGTACTGTAATGCCTCTCCTCGTTTGCCGCTTTTGT TTCGCGTGTGCCCTGGATTGTTGCCTGCAATGCTTATGCTCTGTCATATG CTCTCTCGCAAGATGGGGCTAAATTGTACAGCCGCTACTGAACCGCTAAG GCCTTGCATTGCTGCCCTACAGCTTTCTTATTGCAACGTTCACGTTGTTG GTGCACGCACTGCTTCTCTGCACGAATGCTTCGCAGATCATGGGTATCGT GGAGCACAGCGGCCACATGCGGCGCCTCGACGTGGTGGTGGTCAAGCCCG AGCAGTACGCATTCGGAATGCTCAGCTGGAGCGGGGACACGCTCTTCCAG CGGTCCATCAGGTAACGGGCAACGAAGGCATAGGCTGCCGCTCCGGTATC GCAAAATACCTTTTGCTGAACTTGCAGCGCTTCTCTGGTGCTTGCGCAAC GCGTCTTTTCTGGTGCTTGCTGGCAGCCGTGTTACTGTGCCCAGACAAGA TCGATCTTGTCGACGCGCTGGTGGCGCAAAAGGTCTAAACGATGCCGCCC TGCCCGCTGCCTCTTTTGTTCATCGTACCGCCGCCGCTACCGTCGCCGAC CGGCAGGGAGTACGCGGAGCACGAGCGCAAGTGGAAGTTCAGCCAGAACG GCCTTGTGGACCTCGAGCACCAACAGCCGGTGCCGGCCATCGTCGAGGGA AAACTCACCACCGAGGAGGCCATTTTCAAGGAGCTCGGCCTCAAGTACAT CCCGCCGGAATTCCGTTTCTGTTGAAGGGGGAAGGGGTGGACAGATGGGC TGCTGGGTCGGGACGGCTGACGGTGAGGTGAGGCTGCGGAGGAGGACGAG GAGGAGGAAGAGCGGGGGGCCATGGAGCTGCGCTGCTGCTGGGAATGGAG GAAGCAAATGACGTGACTAAATATCCCTTCTACTATGCGAAGAATTGTTT CAGCAAAAGCCCTGCGGTGGGTACGGATTATGGGCATTGTTCAGAAGAAG CCAGGGGCCAAGGAAATATGGAAGGAAAAAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11419:28..1908-

>mRNA_P-wetherbeei_contig11419.1.1 ID=mRNA_P-wetherbeei_contig11419.1.1|Name=mRNA_P-wetherbeei_contig11419.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=717bp|location=Sequence derived from alignment at P-wetherbeei_contig11419:28..1908- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGAGGGCAAGCTCCCGGGTGTGACGGCGGCGGCGCGCGTGACGCT
CGAATGGTACGACGACCTCTCCGCCAAGATTTCGCGCAGCGAGGTCGTTG
AGATCGCCGAACGGGCGCGCCAGGATGTCGACGCGGCGGCCGCCCGTGTC
GACCCGACAGCCGAGGTGCGCTTCACGGTGGTCGGCGGCTATCGCCGCGG
CAACCCGAGCAGCCATGACGTCGACGTCCTGGTGACGTTGGCGCGCTGCG
AGGGCGATGCCGCGCCGCAGCCCGATTACGTCGAATTCCGCCATGCCATC
GAGGAGGAGCTGGGCCGGTCGGGCTTGCTGCGTCACGTCTTCTTGTCGGG
CGCCTTCTCCGTGCAGGCGTCCGACCAGGATTCGCCCTTTGAGAAGCAAG
AGATTGTGGGTGAACAGCGGCGGTTCGCTTTAGTTCCTGGTTTCACCGGC
CACATGCGGCGCCTCGACGTGGTGGTGGTCAAGCCCGAGCAGTACGCATT
CGGAATGCTCAGCTGGAGCGGGGACACGCTCTTCCAGCGGTCCATCAGGG
AGTACGCGGAGCACGAGCGCAAGTGGAAGTTCAGCCAGAACGGCCTTGTG
GACCTCGAGCACCAACAGCCGGTGCCGGCCATCGTCGAGGGAAAACTCAC
CACCGAGGAGGCCATTTTCAAGGAGCTCGGCCTCAAGTACATCCCGCCGG
AATTCCGTTTCTGTTGA
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