mRNA_P-wetherbeei_contig21457.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21457.1.1
Unique NamemRNA_P-wetherbeei_contig21457.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig21457.1.1 vs. uniprot
Match: A0A849UHH7_9PROT (PEP-CTERM sorting domain-containing protein n=1 Tax=Methylotenera sp. TaxID=2051956 RepID=A0A849UHH7_9PROT)

HSP 1 Score: 52.8 bits (125), Expect = 7.680e-6
Identity = 49/135 (36.30%), Postives = 71/135 (52.59%), Query Frame = 1
Query:   25 FSGTNKFGTFSDTYSFTLGSSGGISDISSWTNVAGTNVTGFDVALTLTGGGAIANATQTVFTG--TQLQSKLEIP-SLVAGTYNITFSGVGGGSLGGRFLSTLTIVTPALAVPEPESWIMLLVGICLVGTIARRR 420
            F G N  G+F+DT++F+L  +   SD S        N   F           I N + ++F    TQL + L+   SLVAG Y +  SGV  G +GG +   +  VTP   VPE +++ M+L+G+ L+G IARRR
Sbjct:   36 FFGNNVSGSFTDTFTFSLLDN---SDTSIGATTLNLNFRRFSFL-------NINNLSLSLFDSGDTQLSTGLDFSQSLVAGNYYLNVSGVATGYIGGLYAGGIN-VTP---VPEAKTYTMMLLGLGLIGFIARRR 156          
BLAST of mRNA_P-wetherbeei_contig21457.1.1 vs. uniprot
Match: A0A7W9DFV7_9BURK (PEP-CTERM domain-containing protein n=3 Tax=unclassified Janthinobacterium TaxID=2610881 RepID=A0A7W9DFV7_9BURK)

HSP 1 Score: 52.8 bits (125), Expect = 1.250e-5
Identity = 45/138 (32.61%), Postives = 69/138 (50.00%), Query Frame = 1
Query:   25 FSGTNKFGTFSDTYSFTLGSSGGISDISSWTNVAGTNVTGFDVALTLTGGGAIANATQTVFTGTQLQS------KLEIPSLVAGTYNITFSGVGGGSLGGRFLSTLTIVTPALAVPEPESWIMLLVGICLVGTIARRR 420
            F   N  GTF D Y+F+      I ++SS + +  +  T   + L    G  + ++   VF GT++QS       L +  L  GTY ++ SG    +    +  T+ +     AVPEPE++ MLL G+ LVG +ARRR
Sbjct:   62 FGKNNLNGTFIDNYTFS------IDELSSLSGITTSISTKPSIDLLELTGFKLTDSFGNVFNGTRVQSGQIDEWNLLLDKLAIGTYTLSVSGTVLTNAAASYSGTINLS----AVPEPETYAMLLAGLGLVGFVARRR 189          
BLAST of mRNA_P-wetherbeei_contig21457.1.1 vs. uniprot
Match: A0A2T4IK39_9RHOO (PEP-CTERM domain-containing protein n=1 Tax=Thauera lacus TaxID=2136175 RepID=A0A2T4IK39_9RHOO)

HSP 1 Score: 52.4 bits (124), Expect = 1.310e-5
Identity = 42/139 (30.22%), Postives = 70/139 (50.36%), Query Frame = 1
Query:   16 VLAFSGTNKFGTFSDTYSFTLGSS----GGISDISSWTNVAGTNVTGFDVALTLTGGGAIANATQTVFTGTQLQSKLEIPSLVAGTYNITFSGVGGGSLGGRFLSTLTIVTPALAVPEPESWIMLLVGICLVGTIARRR 420
            V+A + T   G FSDT++F+L       G + D+ S   +   N++     L  + G  + +      +      K  + +LVA +Y++  SG   G  GGR+   +T    A  VPEP++ +M+L G+ L+G +ARRR
Sbjct:   35 VIASTVTTAKGAFSDTWNFSLAGDSFTVGAVFDLPSLLGLH-YNISSLSAQLFSSSGALVVDFDDCFLSSKDF--KFSLGTLVADSYSLLVSGNATGWAGGRYELKMTAKQIAAPVPEPQTLLMMLSGLGLLGAVARRR 170          
BLAST of mRNA_P-wetherbeei_contig21457.1.1 vs. uniprot
Match: A0A7W2IBP6_9BURK (FxDxF family PEP-CTERM protein n=1 Tax=Duganella sp. LX20W TaxID=2758569 RepID=A0A7W2IBP6_9BURK)

HSP 1 Score: 51.6 bits (122), Expect = 2.930e-5
Identity = 51/147 (34.69%), Postives = 73/147 (49.66%), Query Frame = 1
Query:   19 LAFSGTNKFGT----------FSDTYSFTLGSSGGISDISSWTNVA---GTNVTGFDVALTLTGGGAIANATQTVFTGTQLQSKLEIPSLVAGTYNITFSGVGGGSLGGRFLSTLTIVTPALAVPEPESWIMLLVGICLVGTIARRR 420
            LA +GT  FG           F+D ++FT   +  +  I + T+ +   G N+TGF +      GGA+A A   V TG   +  L   +L AG+Y +  SG    + GG F    TI     AVPEPE + ML VG+ L+G + +RR
Sbjct:   40 LAPNGTAHFGDKFKNNLKNDIFADHFTFTTTGTTKLDLILTSTSTSALNGLNITGFSL---YKAGGALAVAGTQVQTGATDKWTLGDANLAAGSYYVQVSGNVVSNTGGAFAGNGTIS----AVPEPEGYAMLFVGLGLIGLVKQRR 179          
BLAST of mRNA_P-wetherbeei_contig21457.1.1 vs. uniprot
Match: UPI001BB7CBA2 (PEP-CTERM sorting domain-containing protein n=1 Tax=Rhodoferax sp. AJA081-3 TaxID=2752316 RepID=UPI001BB7CBA2)

HSP 1 Score: 51.6 bits (122), Expect = 3.650e-5
Identity = 28/55 (50.91%), Postives = 36/55 (65.45%), Query Frame = 1
Query:  256 GTYNITFSGVGGGSLGGRFLSTLTIVTPALAVPEPESWIMLLVGICLVGTIARRR 420
            G  N+TFS  GG    G  L  +++ T   AVPEPES+ M+L G+ L+GTIARRR
Sbjct:  150 GATNLTFSATGGSDSLGGSLDNVSVTT---AVPEPESYAMMLAGLALMGTIARRR 201          
BLAST of mRNA_P-wetherbeei_contig21457.1.1 vs. uniprot
Match: A0A2S7JB06_9BURK (Pyruvate-binding protein n=1 Tax=Rhodoferax sp. TS-BS-61-7 TaxID=2094194 RepID=A0A2S7JB06_9BURK)

HSP 1 Score: 50.8 bits (120), Expect = 4.750e-5
Identity = 44/134 (32.84%), Postives = 67/134 (50.00%), Query Frame = 1
Query:   34 TNKFGTFSDTYSFTLGSSGGISD-----ISSWTNVAGTNVTGFDVALTLTGGGAIANATQTVFTGTQLQSKLEIPSLVAGTYNITFSGVGGGSLGGRFLSTLTIVTPALAVPEPESWIMLLVGICLVGTIARRR 420
            T+  G+F DT +F++ S+  +S      + S+ N +  N++   V +      A        F G        +P+  AG Y++  +G+  G+ GG    T  I   A  VPEPE++ MLL G+ LVGTIARRR
Sbjct:   39 THAAGSFEDTINFSIASASTLSGTASNLVLSFGNFSVLNISNLMVNV-WNNSHAAGXXXYGSFAGNTQTYTFNLPA--AGNYHVDITGIANGASGG----TYGIALSAAPVPEPETFAMLLAGLGLVGTIARRR 165          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21457.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A849UHH7_9PROT7.680e-636.30PEP-CTERM sorting domain-containing protein n=1 Ta... [more]
A0A7W9DFV7_9BURK1.250e-532.61PEP-CTERM domain-containing protein n=3 Tax=unclas... [more]
A0A2T4IK39_9RHOO1.310e-530.22PEP-CTERM domain-containing protein n=1 Tax=Thauer... [more]
A0A7W2IBP6_9BURK2.930e-534.69FxDxF family PEP-CTERM protein n=1 Tax=Duganella s... [more]
UPI001BB7CBA23.650e-550.91PEP-CTERM sorting domain-containing protein n=1 Ta... [more]
A0A2S7JB06_9BURK4.750e-532.84Pyruvate-binding protein n=1 Tax=Rhodoferax sp. TS... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21457contigP-wetherbeei_contig21457:310..729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1101195.Meth11DRAFT_0837
PFAMsVPEP
Model size420
Max annot lvl206350|Nitrosomonadales
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.2e-06
EggNOG OGs2DRHC@1|root,33BRH@2|Bacteria,1PGCK@1224|Proteobacteria,2WA54@28216|Betaproteobacteria,2KND2@206350|Nitrosomonadales
DescriptionPEP-CTERM motif
Cds size420
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186226.279006-CDS-P-wetherbeei_contig21457:309..7291683186226.279006-CDS-P-wetherbeei_contig21457:309..729Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21457 310..729 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21457.1.1prot_P-wetherbeei_contig21457.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21457 310..729 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21457.1.1

>prot_P-wetherbeei_contig21457.1.1 ID=prot_P-wetherbeei_contig21457.1.1|Name=mRNA_P-wetherbeei_contig21457.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=140bp
VVVGDVLAFSGTNKFGTFSDTYSFTLGSSGGISDISSWTNVAGTNVTGFD
VALTLTGGGAIANATQTVFTGTQLQSKLEIPSLVAGTYNITFSGVGGGSL
GGRFLSTLTIVTPALAVPEPESWIMLLVGICLVGTIARRR
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mRNA from alignment at P-wetherbeei_contig21457:310..729+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21457.1.1 ID=mRNA_P-wetherbeei_contig21457.1.1|Name=mRNA_P-wetherbeei_contig21457.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig21457:310..729+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGTGGTCGGCGACGTGCTTGCCTTCAGCGGGACCAACAAATTCGGAAC CTTTTCCGACACCTACTCCTTCACCCTGGGTAGCTCAGGCGGCATCTCGG ACATATCGTCATGGACTAATGTCGCCGGCACCAATGTCACGGGATTCGAT GTCGCACTCACCCTCACGGGTGGAGGTGCAATTGCGAACGCCACCCAAAC CGTGTTCACCGGTACCCAGCTGCAAAGCAAACTCGAAATTCCCAGTCTCG TCGCCGGAACTTACAACATCACATTTTCCGGAGTCGGCGGCGGAAGCCTG GGAGGCCGCTTTCTCTCCACCTTGACGATAGTGACCCCGGCGCTGGCTGT TCCGGAACCCGAATCCTGGATCATGTTGCTGGTCGGCATTTGCCTGGTCG GGACCATCGCACGTCGGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21457:310..729+

>mRNA_P-wetherbeei_contig21457.1.1 ID=mRNA_P-wetherbeei_contig21457.1.1|Name=mRNA_P-wetherbeei_contig21457.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig21457:310..729+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGTGGTCGGCGACGTGCTTGCCTTCAGCGGGACCAACAAATTCGGAAC
CTTTTCCGACACCTACTCCTTCACCCTGGGTAGCTCAGGCGGCATCTCGG
ACATATCGTCATGGACTAATGTCGCCGGCACCAATGTCACGGGATTCGAT
GTCGCACTCACCCTCACGGGTGGAGGTGCAATTGCGAACGCCACCCAAAC
CGTGTTCACCGGTACCCAGCTGCAAAGCAAACTCGAAATTCCCAGTCTCG
TCGCCGGAACTTACAACATCACATTTTCCGGAGTCGGCGGCGGAAGCCTG
GGAGGCCGCTTTCTCTCCACCTTGACGATAGTGACCCCGGCGCTGGCTGT
TCCGGAACCCGAATCCTGGATCATGTTGCTGGTCGGCATTTGCCTGGTCG
GGACCATCGCACGTCGGCGC
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