mRNA_P-wetherbeei_contig2119.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2119.6.1
Unique NamemRNA_P-wetherbeei_contig2119.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig2119.6.1 vs. uniprot
Match: A0A6S9H5Z4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9H5Z4_HETAK)

HSP 1 Score: 89.0 bits (219), Expect = 1.250e-17
Identity = 56/143 (39.16%), Postives = 77/143 (53.85%), Query Frame = 1
Query:   73 DFVFSSFNDTTGLTFVGSAATSACVNKSSLAYGAVEGNADLLKEMPPVPPILSEKVASWSKQEVETSAPEDTPPEKASIAGFGNREGTVASPDARHRECPVRARLTPSAPSRAGALWYDVPVAVATGLPTCFVLHPTAHRRVC 501
            DFV+  FN TTGL F G AA+S C ++   +YG   G++D L     +P    E ++   ++   T+ P++   E   I  FG+R+  V +P      CPVR RLTPS P+RAGA WY  P+ V  G  T F    + H RVC
Sbjct:   22 DFVYPDFNQTTGLVFNGDAASSGCTDEFERSYGDYHGDSDQLNGS--LPTQRWETISLTGERTQTTNDPDEDIEE---ITRFGHRDDFVPTPGG---PCPVRLRLTPSRPARAGAAWYRNPLPVHLGFSTLFTFQVSDHSRVC 156          
BLAST of mRNA_P-wetherbeei_contig2119.6.1 vs. uniprot
Match: A0A5A8EG74_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EG74_CAFRO)

HSP 1 Score: 87.8 bits (216), Expect = 2.960e-17
Identity = 57/145 (39.31%), Postives = 76/145 (52.41%), Query Frame = 1
Query:   73 DFVFSSFNDTTGLTFVGSAATSACVNKSSLAYGAVEGNADLLKEMPPVPP--ILSEKVASWSKQEVETSAPEDTPPEKASIAGFGNREGTVASPDARHRECPVRARLTPSAPSRAGALWYDVPVAVATGLPTCFVLHPTAHRRVC 501
            DF + +F D TGL+FVGSAAT++C N +  AY    G AD +     VPP  + +E   S   + VET  P  T   + ++A FG+R+    +P      C VRARLTPS P + GA+W      +A G  T F    T H R C
Sbjct:   28 DFAYPTFGDLTGLSFVGSAATTSCGNNTPFAYQERHGTADGISRGS-VPPSEVHTEYAGSRETRTVETDDPATTGAVRDALASFGHRDSYGTAPVG---SCDVRARLTPSQPFKRGAIWRQQEAGIARGFDTEFTWQVTEHSRQC 168          
BLAST of mRNA_P-wetherbeei_contig2119.6.1 vs. uniprot
Match: A0A6H5L892_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L892_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.880e-16
Identity = 42/75 (56.00%), Postives = 48/75 (64.00%), Query Frame = 1
Query:  277 PEDTPPEKASIAGFGNREGTVASPDARHRECPVRARLTPSAPSRAGALWYDVPVAVATGLPTCFVLHPTAHRRVC 501
            P D PP  A+ AGFGNRE    SPDAR   C VR+RLTPS PS+AGA+WY +PV V  G  T F    T H R+C
Sbjct:    3 PGDAPP--AAQAGFGNREAVQQSPDARGSRCRVRSRLTPSLPSKAGAMWYSLPVPVTRGFETLFTFQITDHSRMC 75          
BLAST of mRNA_P-wetherbeei_contig2119.6.1 vs. uniprot
Match: D8LHX6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHX6_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 2.410e-13
Identity = 36/64 (56.25%), Postives = 41/64 (64.06%), Query Frame = 1
Query:  310 AGFGNREGTVASPDARHRECPVRARLTPSAPSRAGALWYDVPVAVATGLPTCFVLHPTAHRRVC 501
            AGFGNRE    SPDA    C VR+RLTPS PS+AGA+WY +PV V  G  T F    T H R+C
Sbjct:   20 AGFGNREAVQQSPDAGGSRCRVRSRLTPSLPSKAGAMWYSLPVPVTRGFETLFTFQITDHSRMC 83          
BLAST of mRNA_P-wetherbeei_contig2119.6.1 vs. uniprot
Match: A0A7S1CPA8_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CPA8_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 5.270e-9
Identity = 54/152 (35.53%), Postives = 75/152 (49.34%), Query Frame = 1
Query:   67 QGDFVFSSFNDTTGLTFVGSAATSAC--VNKSSLAYGAVE--------------GNADLLKEMPPVPPILSEKVASWSKQEVETSAPEDTPPE--KASIAGFGNREGTVASPDARHRECPVRARLTPSAPSRAGALWYDVPVAVATGLPTCF 468
            + DF++ +FNDTTGL F G+A T++C  V+  S  Y   E              G++DL      VPP + +   + S Q +E SA   T     K   A  G+R+  V S D     CPVR R+TP+ P R G++W    V+V TG  T F
Sbjct:   27 RADFIYDTFNDTTGLEFNGNAVTTSCEGVDDHSYQYQEREATPPAEGYRPNEPHGDSDLNDHGEEVPPQIGQNTETVSVQTLE-SADNFTISRIVKTQTAIVGHRDDFVDSQDP--VRCPVRLRMTPAQPFRKGSVWRKQRVSVYTGFETAF 175          
BLAST of mRNA_P-wetherbeei_contig2119.6.1 vs. uniprot
Match: A0A7S2CPB0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CPB0_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 3.360e-8
Identity = 34/96 (35.42%), Postives = 50/96 (52.08%), Query Frame = 1
Query:  214 VPPILSEKVASWSKQEVETSAPEDTPPEKASIAGFGNREGTVASPDARHRECPVRARLTPSAPSRAGALWYDVPVAVATGLPTCFVLHPTAHRRVC 501
            +P   +E +  ++++ VET    D+     S A FG+R+     P  R   CPVR RL PS PSRAG++WY  P+ +  G  T F    + H + C
Sbjct:    8 IPMQRAETIDKYTERTVETDDYGDSRDIPTSSAVFGHRDNFRPHPRGR---CPVRVRLNPSRPSRAGSMWYHTPIPINKGFQTLFTFQVSDHSKEC 100          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2119.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6S9H5Z4_HETAK1.250e-1739.16Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A5A8EG74_CAFRO2.960e-1739.31Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A6H5L892_9PHAE1.880e-1656.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHX6_ECTSI2.410e-1356.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1CPA8_9STRA5.270e-935.53RING-type E3 ubiquitin transferase n=1 Tax=Bicosoe... [more]
A0A7S2CPB0_9STRA3.360e-835.42Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2119contigP-wetherbeei_contig2119:5651..6151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog157072.XP_008870017.1
PFAMsLectin_legB
Model size501
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons1
Evalue3.16e-14
EggNOG OGs2CMVS@1|root,2QS8X@2759|Eukaryota
DescriptionLegume lectin domain
Cds size501
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186218.6523583-CDS-P-wetherbeei_contig2119:5650..61511683186218.6523583-CDS-P-wetherbeei_contig2119:5650..6151Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2119 5651..6151 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2119.6.1prot_P-wetherbeei_contig2119.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2119 5651..6151 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2119.6.1

>prot_P-wetherbeei_contig2119.6.1 ID=prot_P-wetherbeei_contig2119.6.1|Name=mRNA_P-wetherbeei_contig2119.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=167bp
RRRLRLAAAAAASFALSRPSLVQGDFVFSSFNDTTGLTFVGSAATSACVN
KSSLAYGAVEGNADLLKEMPPVPPILSEKVASWSKQEVETSAPEDTPPEK
ASIAGFGNREGTVASPDARHRECPVRARLTPSAPSRAGALWYDVPVAVAT
GLPTCFVLHPTAHRRVC
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mRNA from alignment at P-wetherbeei_contig2119:5651..6151+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2119.6.1 ID=mRNA_P-wetherbeei_contig2119.6.1|Name=mRNA_P-wetherbeei_contig2119.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig2119:5651..6151+ (Phaeothamnion wetherbeei SAG_119_79)
CGCCGCAGGCTTCGTCTTGCTGCAGCCGCAGCTGCGTCGTTTGCTCTTTC ACGCCCGTCGCTCGTCCAGGGAGACTTTGTGTTTTCCAGCTTCAACGATA CCACCGGGTTGACGTTCGTCGGATCCGCGGCGACGAGCGCATGCGTCAAC AAGAGCAGCCTGGCGTACGGCGCCGTGGAGGGCAATGCGGACTTGCTCAA GGAGATGCCGCCCGTGCCTCCGATCCTCTCCGAAAAGGTGGCATCCTGGT CGAAACAAGAGGTTGAGACGAGTGCGCCCGAGGACACGCCGCCCGAAAAG GCGTCCATAGCTGGCTTTGGCAACCGGGAAGGCACTGTGGCCTCGCCAGA CGCTCGCCACCGCGAGTGCCCCGTCCGCGCGCGCCTCACGCCGTCCGCGC CGTCGAGGGCTGGCGCACTGTGGTACGACGTGCCCGTTGCCGTCGCGACG GGCTTGCCGACGTGCTTCGTCTTGCACCCCACGGCGCACAGACGCGTCTG C
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2119:5651..6151+

>mRNA_P-wetherbeei_contig2119.6.1 ID=mRNA_P-wetherbeei_contig2119.6.1|Name=mRNA_P-wetherbeei_contig2119.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=501bp|location=Sequence derived from alignment at P-wetherbeei_contig2119:5651..6151+ (Phaeothamnion wetherbeei SAG_119_79)
CGCCGCAGGCTTCGTCTTGCTGCAGCCGCAGCTGCGTCGTTTGCTCTTTC
ACGCCCGTCGCTCGTCCAGGGAGACTTTGTGTTTTCCAGCTTCAACGATA
CCACCGGGTTGACGTTCGTCGGATCCGCGGCGACGAGCGCATGCGTCAAC
AAGAGCAGCCTGGCGTACGGCGCCGTGGAGGGCAATGCGGACTTGCTCAA
GGAGATGCCGCCCGTGCCTCCGATCCTCTCCGAAAAGGTGGCATCCTGGT
CGAAACAAGAGGTTGAGACGAGTGCGCCCGAGGACACGCCGCCCGAAAAG
GCGTCCATAGCTGGCTTTGGCAACCGGGAAGGCACTGTGGCCTCGCCAGA
CGCTCGCCACCGCGAGTGCCCCGTCCGCGCGCGCCTCACGCCGTCCGCGC
CGTCGAGGGCTGGCGCACTGTGGTACGACGTGCCCGTTGCCGTCGCGACG
GGCTTGCCGACGTGCTTCGTCTTGCACCCCACGGCGCACAGACGCGTCTG
C
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