mRNA_P-wetherbeei_contig21047.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig21047.1.1
Unique NamemRNA_P-wetherbeei_contig21047.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig21047.1.1 vs. uniprot
Match: A0A1A8Y1Y7_9RHOO (Uncharacterized protein n=1 Tax=Candidatus Propionivibrio aalborgensis TaxID=1860101 RepID=A0A1A8Y1Y7_9RHOO)

HSP 1 Score: 79.7 bits (195), Expect = 1.150e-17
Identity = 40/70 (57.14%), Postives = 47/70 (67.14%), Query Frame = 1
Query:    1 MRRLVLVLVLLLLPLQASWAAVAAYCGHENGVASKHMGHHQHKHQAGAGDQASEPAPGTGGMDRDCGTCH 210
            MRR + +L+L+ LP Q +WAAVA YC HE   AS+H GHHQHKHQA A          TGG+D DCGTCH
Sbjct:    1 MRRWLAILLLVFLPFQFTWAAVAGYCQHEADAASQHFGHHQHKHQADADHDGVPDTKLTGGIDSDCGTCH 70          
BLAST of mRNA_P-wetherbeei_contig21047.1.1 vs. uniprot
Match: A0A7X3HPY8_9BURK (Cobalt-zinc-cadmium resistance protein n=1 Tax=Cupriavidus sp. SW-Y-13 TaxID=2653854 RepID=A0A7X3HPY8_9BURK)

HSP 1 Score: 78.6 bits (192), Expect = 3.100e-17
Identity = 41/71 (57.75%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    1 MRRLVLVLVLLLLPLQASWAAVAAYCGHENGVASKHMGHHQHKHQAGAGDQASEPAPGTGGMDRDCGTCHI 213
            MRR  L+ +LL+LP Q SWAA A YC HE+ VAS H+GHH H+HQA  GD   E A   G  D DCG CHI
Sbjct:    1 MRRFFLICLLLVLPFQFSWAAAARYCQHESAVASWHLGHHDHRHQAAQGDSEKEKA---GVADTDCGVCHI 68          
BLAST of mRNA_P-wetherbeei_contig21047.1.1 vs. uniprot
Match: A0A1E4LLV2_9BURK (Uncharacterized protein n=1 Tax=Comamonadaceae bacterium SCN 68-20 TaxID=1660161 RepID=A0A1E4LLV2_9BURK)

HSP 1 Score: 77.8 bits (190), Expect = 6.560e-17
Identity = 35/71 (49.30%), Postives = 52/71 (73.24%), Query Frame = 1
Query:    1 MRRLVLVLVLLLLPLQASWAAVAAYCGHENGVASKHMGHHQHKHQAGAGDQASEPAPGTGGMDRDCGTCHI 213
            MRRLVL+ ++LLLP+Q +WAA AAYC HE+  A++H+GHH+H H+A A + + + +   G +D DC  CH+
Sbjct:    1 MRRLVLICMMLLLPIQWTWAAAAAYCAHESSAAARHIGHHEHVHKASAAEGSKKASIAAGALDLDCDYCHL 71          
BLAST of mRNA_P-wetherbeei_contig21047.1.1 vs. uniprot
Match: N6Z6W7_THAL4 (Uncharacterized protein n=1 Tax=Thauera linaloolentis (strain DSM 12138 / CCUG 41526 / CIP 105981 / IAM 15112 / NBRC 102519 / 47Lol) TaxID=1123367 RepID=N6Z6W7_THAL4)

HSP 1 Score: 75.9 bits (185), Expect = 3.570e-16
Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 1
Query:   19 VLVLLLLPLQASWAAVAAYCGHENGVASKHMGHHQHKHQAGAGDQASEPAPGTGGMDRDCGTCH 210
            +L+LL+LPLQ+SWAAV+ YC HE+G A++H+GHH H HQ+GAGD +     G   +D DC  CH
Sbjct:    7 ILLLLILPLQSSWAAVSVYCQHEDGAAAEHLGHHAHPHQSGAGDTSGTEGSG---VDSDCSFCH 67          
BLAST of mRNA_P-wetherbeei_contig21047.1.1 vs. uniprot
Match: A0A5C7VLT4_9BURK (Uncharacterized protein n=1 Tax=Pelomonas sp. TaxID=1909303 RepID=A0A5C7VLT4_9BURK)

HSP 1 Score: 75.5 bits (184), Expect = 7.180e-16
Identity = 43/84 (51.19%), Postives = 55/84 (65.48%), Query Frame = 1
Query:    1 MRRLVLVLVLLLLPLQASWAAVAAYCGHENGVASKHMGHHQHKH-----QAGAGDQASE----PAPGTG----GMDRDCGTCHI 213
            MRR + +L+++LLPLQ SWA  AAYCGHE G A++H+GHH H+H     +AGA  QA      P   TG    G+D DCGTCH+
Sbjct:    1 MRRWLCLLLMVLLPLQFSWAVAAAYCGHEAGGAARHVGHHAHEHAASKAEAGASPQAEHAHQVPLKKTGSTPAGLDNDCGTCHL 84          
BLAST of mRNA_P-wetherbeei_contig21047.1.1 vs. uniprot
Match: UPI001C2CE26E (hypothetical protein n=1 Tax=Pandoraea cepalis TaxID=2508294 RepID=UPI001C2CE26E)

HSP 1 Score: 74.7 bits (182), Expect = 9.180e-16
Identity = 37/70 (52.86%), Postives = 48/70 (68.57%), Query Frame = 1
Query:    1 MRRLVLVLVLLLLPLQASWAAVAAYCGHENGVASKHMGHHQHKHQAGAGDQASEPAPGTGGMDRDCGTCH 210
            MR+ + +++L+ LPLQ SWAAVA+YC HE G A+KH GHH H+H+A  G  AS     T G D DC +CH
Sbjct:    1 MRKWLAIVLLVFLPLQFSWAAVASYCQHETGAAAKHFGHHAHQHKAADGQDASPDPAKTLGGDPDCASCH 70          
BLAST of mRNA_P-wetherbeei_contig21047.1.1 vs. uniprot
Match: A0A368L1A8_9BURK (Uncharacterized protein n=1 Tax=Parvibium lacunae TaxID=1888893 RepID=A0A368L1A8_9BURK)

HSP 1 Score: 74.7 bits (182), Expect = 1.070e-15
Identity = 35/71 (49.30%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    1 MRRLVLVLVLLLLPLQASWAAVAAYCGHENGVASKHMGHHQHKHQAGAGDQASEPAPGTGGMDRDCGTCHI 213
            M+R  ++ +L+LLP+Q SWAA+A+YC HE+GVA+ H GHH H HQA    ++ + A  + G+  DCGTCH+
Sbjct:    1 MKRYSIIFLLILLPVQFSWAAMASYCQHESGVATNHPGHHSHAHQATDHHESGKDASPSTGVHHDCGTCHM 71          
BLAST of mRNA_P-wetherbeei_contig21047.1.1 vs. uniprot
Match: UPI001AC32610 (DUF2946 family protein n=1 Tax=Rhodocyclales bacterium TaxID=2072421 RepID=UPI001AC32610)

HSP 1 Score: 74.3 bits (181), Expect = 1.440e-15
Identity = 39/73 (53.42%), Postives = 50/73 (68.49%), Query Frame = 1
Query:    1 MRRLVLVLVLLLLPLQASWAAVAAYCGHENGVASKHMGHHQHKHQAG--AGDQASEPAPGTGGMDRDCGTCHI 213
            M+RLVL+ ++L+LPLQ SWA V+AYC HE G A++H+GHH H+HQ    AGD  S P    G    DCG CH+
Sbjct:    1 MKRLVLMFLMLMLPLQFSWAGVSAYCQHETGAAAQHVGHHDHQHQKSPDAGDDGSAP----GKAHADCGYCHL 69          
BLAST of mRNA_P-wetherbeei_contig21047.1.1 vs. uniprot
Match: A0A8G0UNH1_9BURK (Uncharacterized protein n=2 Tax=unclassified Diaphorobacter TaxID=2649760 RepID=A0A8G0UNH1_9BURK)

HSP 1 Score: 74.3 bits (181), Expect = 1.630e-15
Identity = 42/73 (57.53%), Postives = 50/73 (68.49%), Query Frame = 1
Query:    1 MRRLVLVLVLLLLPLQASWAAVAAYCGHENGVASKHMGHHQHKHQAGA-GDQASEPAPGTG--GMDRDCGTCH 210
            MRR + +L+L LLPLQ SWAAVAAYCGHE G   +H+GHH+H+H   A  DQ S PA  +   G D DCG CH
Sbjct:    1 MRRWLAILMLALLPLQFSWAAVAAYCGHETGQHVQHLGHHEHQHTDEATADQGSAPADQSAPAGFDFDCGHCH 73          
BLAST of mRNA_P-wetherbeei_contig21047.1.1 vs. uniprot
Match: A0A2T7UHM6_9BURK (Uncharacterized protein n=13 Tax=Proteobacteria TaxID=1224 RepID=A0A2T7UHM6_9BURK)

HSP 1 Score: 73.9 bits (180), Expect = 2.150e-15
Identity = 35/71 (49.30%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    1 MRRLVLVLVLLLLPLQASWAAVAAYCGHENGVASKHMGHHQHKHQAGAGDQASEPAPGTGGMDRDCGTCHI 213
            M++ + + +L+LLPLQ SWAA+A+YC HE    +KH GHH H H A     +S+ AP + GMD DC TCH+
Sbjct:    1 MKKFLAIFLLVLLPLQYSWAAMASYCEHETSATAKHPGHHTHDHAAIDQQDSSKNAPQSAGMDHDCATCHM 71          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig21047.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1A8Y1Y7_9RHOO1.150e-1757.14Uncharacterized protein n=1 Tax=Candidatus Propion... [more]
A0A7X3HPY8_9BURK3.100e-1757.75Cobalt-zinc-cadmium resistance protein n=1 Tax=Cup... [more]
A0A1E4LLV2_9BURK6.560e-1749.30Uncharacterized protein n=1 Tax=Comamonadaceae bac... [more]
N6Z6W7_THAL43.570e-1654.69Uncharacterized protein n=1 Tax=Thauera linaloolen... [more]
A0A5C7VLT4_9BURK7.180e-1651.19Uncharacterized protein n=1 Tax=Pelomonas sp. TaxI... [more]
UPI001C2CE26E9.180e-1652.86hypothetical protein n=1 Tax=Pandoraea cepalis Tax... [more]
A0A368L1A8_9BURK1.070e-1549.30Uncharacterized protein n=1 Tax=Parvibium lacunae ... [more]
UPI001AC326101.440e-1553.42DUF2946 family protein n=1 Tax=Rhodocyclales bacte... [more]
A0A8G0UNH1_9BURK1.630e-1557.53Uncharacterized protein n=2 Tax=unclassified Diaph... [more]
A0A2T7UHM6_9BURK2.150e-1549.30Uncharacterized protein n=13 Tax=Proteobacteria Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig21047contigP-wetherbeei_contig21047:301..513 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog232721.Ajs_1846
Model size213
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue2.27e-17
EggNOG OGs2E2ZN@1|root,33IDC@2|Bacteria,1NGTB@1224|Proteobacteria,2VXM3@28216|Betaproteobacteria,4AIPP@80864|Comamonadaceae
Cds size213
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186215.555486-CDS-P-wetherbeei_contig21047:300..5131683186215.555486-CDS-P-wetherbeei_contig21047:300..513Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig21047 301..513 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig21047.1.1prot_P-wetherbeei_contig21047.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig21047 301..513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig21047.1.1

>prot_P-wetherbeei_contig21047.1.1 ID=prot_P-wetherbeei_contig21047.1.1|Name=mRNA_P-wetherbeei_contig21047.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=71bp
MRRLVLVLVLLLLPLQASWAAVAAYCGHENGVASKHMGHHQHKHQAGAGD
QASEPAPGTGGMDRDCGTCHI
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mRNA from alignment at P-wetherbeei_contig21047:301..513-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig21047.1.1 ID=mRNA_P-wetherbeei_contig21047.1.1|Name=mRNA_P-wetherbeei_contig21047.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=213bp|location=Sequence derived from alignment at P-wetherbeei_contig21047:301..513- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTCGTCTTGTCCTCGTTCTGGTGCTGCTTCTGTTGCCCCTGCAAGC CTCATGGGCAGCAGTGGCGGCCTATTGCGGACACGAGAATGGCGTGGCGT CCAAGCATATGGGGCACCATCAGCACAAACATCAAGCGGGCGCCGGCGAC CAGGCGAGTGAACCAGCGCCCGGAACGGGTGGTATGGACAGGGATTGCGG CACCTGCCACATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig21047:301..513-

>mRNA_P-wetherbeei_contig21047.1.1 ID=mRNA_P-wetherbeei_contig21047.1.1|Name=mRNA_P-wetherbeei_contig21047.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=213bp|location=Sequence derived from alignment at P-wetherbeei_contig21047:301..513- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTCGTCTTGTCCTCGTTCTGGTGCTGCTTCTGTTGCCCCTGCAAGC
CTCATGGGCAGCAGTGGCGGCCTATTGCGGACACGAGAATGGCGTGGCGT
CCAAGCATATGGGGCACCATCAGCACAAACATCAAGCGGGCGCCGGCGAC
CAGGCGAGTGAACCAGCGCCCGGAACGGGTGGTATGGACAGGGATTGCGG
CACCTGCCACATC
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