mRNA_P-wetherbeei_contig20930.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20930.1.1
Unique NamemRNA_P-wetherbeei_contig20930.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20930.1.1 vs. uniprot
Match: A0A7C2QTX9_9HYPH (TauD/TfdA family dioxygenase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C2QTX9_9HYPH)

HSP 1 Score: 315 bits (808), Expect = 2.770e-106
Identity = 151/192 (78.65%), Postives = 172/192 (89.58%), Query Frame = 1
Query:    4 MAVSIRPLRDVFVGEVSGVDITKPLRPDEVAALEAGMDRYAVLVFHGQNISDEQQMAFSQNFGPLEDARGGNVTRPEDKRLGTGMNDVSNLGKDGKPLPRDSRQRLFNLGNSLWHSDSSFRAIPAKYSLLSARIVNAKGGNTEFADMRAAYDTLDDETKREIADLVCEHSLMYSRGALGFLDYTDEEKQMFK 579
            M V+IR +  +FVGEVSG+DIT+P+  +E  A+EAGMDRYAVLVFH Q ++DEQQMAF++ FG +EDARGGNVTRPEDKRL  GMNDVSNLGKDG+PL RDSRQRLFNLGN LWHSDSSFRAIPAKYSLLSAR+VN KGGNTEFADMRAAYD LDD+ KR+I DLVCEHSLMYSRG+LGF+DYT+EEK+MFK
Sbjct:    1 MPVAIRQIHPLFVGEVSGIDITRPISREEATAIEAGMDRYAVLVFHDQPVTDEQQMAFTKTFGAIEDARGGNVTRPEDKRLQVGMNDVSNLGKDGRPLARDSRQRLFNLGNMLWHSDSSFRAIPAKYSLLSARVVNPKGGNTEFADMRAAYDALDDDMKRQIEDLVCEHSLMYSRGSLGFVDYTEEEKRMFK 192          
BLAST of mRNA_P-wetherbeei_contig20930.1.1 vs. uniprot
Match: A0A2V7CXI7_9BACT (2,4-dichlorophenoxyacetate dioxygenase n=3 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V7CXI7_9BACT)

HSP 1 Score: 314 bits (804), Expect = 1.050e-105
Identity = 150/192 (78.12%), Postives = 171/192 (89.06%), Query Frame = 1
Query:    4 MAVSIRPLRDVFVGEVSGVDITKPLRPDEVAALEAGMDRYAVLVFHGQNISDEQQMAFSQNFGPLEDARGGNVTRPEDKRLGTGMNDVSNLGKDGKPLPRDSRQRLFNLGNSLWHSDSSFRAIPAKYSLLSARIVNAKGGNTEFADMRAAYDTLDDETKREIADLVCEHSLMYSRGALGFLDYTDEEKQMFK 579
            M +SIR +  VFVGEVSG+DI KP  PDEVAA++AGMDRYAVLVFH Q I+DEQQMAFSQNFGPLEDARGGN+T+PEDKRL TGMNDVSNLG+DG+PL R+SR RLFNLGN LWHSDSSFRA+PA+YSLLSAR+VN  GGNTEFADMRAAYDTLD  TK +I DL+CEHSLMYSRG+LG LDY++EE+ MF+
Sbjct:    1 MTISIRQIHPVFVGEVSGIDIAKPRTPDEVAAIKAGMDRYAVLVFHDQKITDEQQMAFSQNFGPLEDARGGNITKPEDKRLQTGMNDVSNLGRDGQPLARESRVRLFNLGNMLWHSDSSFRAVPAQYSLLSARVVNPAGGNTEFADMRAAYDTLDAATKAQIEDLICEHSLMYSRGSLGMLDYSEEERAMFR 192          
BLAST of mRNA_P-wetherbeei_contig20930.1.1 vs. uniprot
Match: A0A2V6YZJ4_9BACT (2,4-dichlorophenoxyacetate dioxygenase (Fragment) n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V6YZJ4_9BACT)

HSP 1 Score: 308 bits (789), Expect = 6.770e-105
Identity = 148/192 (77.08%), Postives = 168/192 (87.50%), Query Frame = 1
Query:    4 MAVSIRPLRDVFVGEVSGVDITKPLRPDEVAALEAGMDRYAVLVFHGQNISDEQQMAFSQNFGPLEDARGGNVTRPEDKRLGTGMNDVSNLGKDGKPLPRDSRQRLFNLGNSLWHSDSSFRAIPAKYSLLSARIVNAKGGNTEFADMRAAYDTLDDETKREIADLVCEHSLMYSRGALGFLDYTDEEKQMFK 579
            M ++IR +  VFVGEVSGVD+ +PL PDEVAA+EAGMDRYAVLVF  Q I+DEQQMAFS+NFG LEDARGGN+T+PEDKRL TGMNDVSNLG+DG+PLPRDSR RLFNLGN LWHSDSSFR IPAKYSLLSAR+VN  GGNTEFADMRAAYD LD  TK  + DL+CEHSLMYSRG+LG LDY++EE+ MF+
Sbjct:    1 MTIAIRQIHPVFVGEVSGVDLARPLAPDEVAAIEAGMDRYAVLVFRDQKITDEQQMAFSRNFGALEDARGGNITKPEDKRLQTGMNDVSNLGRDGQPLPRDSRVRLFNLGNMLWHSDSSFRPIPAKYSLLSARVVNPTGGNTEFADMRAAYDALDASTKALVEDLICEHSLMYSRGSLGMLDYSEEERAMFR 192          
BLAST of mRNA_P-wetherbeei_contig20930.1.1 vs. uniprot
Match: A0A2V6QKE4_9BACT (2,4-dichlorophenoxyacetate dioxygenase n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V6QKE4_9BACT)

HSP 1 Score: 310 bits (795), Expect = 4.330e-104
Identity = 153/192 (79.69%), Postives = 166/192 (86.46%), Query Frame = 1
Query:    4 MAVSIRPLRDVFVGEVSGVDITKPLRPDEVAALEAGMDRYAVLVFHGQNISDEQQMAFSQNFGPLEDARGGNVTRPEDKRLGTGMNDVSNLGKDGKPLPRDSRQRLFNLGNSLWHSDSSFRAIPAKYSLLSARIVNAKGGNTEFADMRAAYDTLDDETKREIADLVCEHSLMYSRGALGFLDYTDEEKQMFK 579
            M  +IR +  VFVGEVSGVD+T PL  DEVAA+EAGMDRYAVLVFH Q I+DEQQMAFSQNFG LEDARGGN+T+PEDKRL  GMNDVSNLGKDG+PLPRDSR+R FNLGN LWHSDSSFR IPAKYSLLSAR+VN  GGNTEFADMRAAYD LD  TK EI  LVCEHSLMYSRG+LG LDY+DEE+ MFK
Sbjct:    1 MTTAIRQIHPVFVGEVSGVDLTLPLSRDEVAAIEAGMDRYAVLVFHDQKITDEQQMAFSQNFGKLEDARGGNITKPEDKRLQVGMNDVSNLGKDGRPLPRDSRERAFNLGNMLWHSDSSFRPIPAKYSLLSARVVNPVGGNTEFADMRAAYDALDAATKAEIEALVCEHSLMYSRGSLGMLDYSDEERAMFK 192          
BLAST of mRNA_P-wetherbeei_contig20930.1.1 vs. uniprot
Match: A0A1B1U9J1_9BRAD (2,4-dichlorophenoxyacetate dioxygenase n=9 Tax=Bradyrhizobium TaxID=374 RepID=A0A1B1U9J1_9BRAD)

HSP 1 Score: 307 bits (787), Expect = 4.460e-103
Identity = 147/192 (76.56%), Postives = 167/192 (86.98%), Query Frame = 1
Query:    4 MAVSIRPLRDVFVGEVSGVDITKPLRPDEVAALEAGMDRYAVLVFHGQNISDEQQMAFSQNFGPLEDARGGNVTRPEDKRLGTGMNDVSNLGKDGKPLPRDSRQRLFNLGNSLWHSDSSFRAIPAKYSLLSARIVNAKGGNTEFADMRAAYDTLDDETKREIADLVCEHSLMYSRGALGFLDYTDEEKQMFK 579
            MA++IR L   FVGEVSG+D+ KPL P E A +EAGMD+YAVL+F  Q+I+DEQQ+AF+ NFG  EDARGGN+ +P+D RL TG+NDVSNLGKDGKPLPRDSR  LFNLGN LWHSDSSFR IPAK+SLLSAR+VN KGGNTEFADMRAAYD LDDETK EI DL+CEHSLMYSRG+LGFLDYTDEEK+MFK
Sbjct:    1 MAIAIRQLHPHFVGEVSGLDLRKPLTPQEAADVEAGMDKYAVLLFRNQDITDEQQLAFALNFGQREDARGGNIVKPQDSRLSTGLNDVSNLGKDGKPLPRDSRAHLFNLGNCLWHSDSSFRPIPAKFSLLSARVVNPKGGNTEFADMRAAYDALDDETKAEIEDLICEHSLMYSRGSLGFLDYTDEEKEMFK 192          
BLAST of mRNA_P-wetherbeei_contig20930.1.1 vs. uniprot
Match: A0A2V7BVR3_9BACT (2,4-dichlorophenoxyacetate dioxygenase n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V7BVR3_9BACT)

HSP 1 Score: 305 bits (781), Expect = 3.640e-102
Identity = 150/192 (78.12%), Postives = 167/192 (86.98%), Query Frame = 1
Query:    4 MAVSIRPLRDVFVGEVSGVDITKPLRPDEVAALEAGMDRYAVLVFHGQNISDEQQMAFSQNFGPLEDARGGNVTRPEDKRLGTGMNDVSNLGKDGKPLPRDSRQRLFNLGNSLWHSDSSFRAIPAKYSLLSARIVNAKGGNTEFADMRAAYDTLDDETKREIADLVCEHSLMYSRGALGFLDYTDEEKQMFK 579
            M +SIR +  VFVGEVSGVDI KPL  DEVA +EAGMDRYAVLVF  Q I+DEQQMAFS+NFG LEDARGGN+T+PEDKRL TGMNDVSNLG+DG+PLPRDSR RLFNLGN LWHSDSSFR +PAKYSLLSAR+VN  GGNTEFADMRAAYD+LD  TK  I +LVCEHSLMYSRG+LG LDY+DEE+ MF+
Sbjct:    1 MTLSIRQIHPVFVGEVSGVDIGKPLSGDEVATIEAGMDRYAVLVFRDQRITDEQQMAFSRNFGALEDARGGNITKPEDKRLQTGMNDVSNLGRDGQPLPRDSRARLFNLGNMLWHSDSSFRPVPAKYSLLSARVVNPTGGNTEFADMRAAYDSLDAATKALIENLVCEHSLMYSRGSLGMLDYSDEERAMFR 192          
BLAST of mRNA_P-wetherbeei_contig20930.1.1 vs. uniprot
Match: A0A3N5N365_9HYPH (TauD/TfdA family dioxygenase n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A3N5N365_9HYPH)

HSP 1 Score: 305 bits (780), Expect = 5.160e-102
Identity = 149/192 (77.60%), Postives = 169/192 (88.02%), Query Frame = 1
Query:    4 MAVSIRPLRDVFVGEVSGVDITKPLRPDEVAALEAGMDRYAVLVFHGQNISDEQQMAFSQNFGPLEDARGGNVTRPEDKRLGTGMNDVSNLGKDGKPLPRDSRQRLFNLGNSLWHSDSSFRAIPAKYSLLSARIVNAKGGNTEFADMRAAYDTLDDETKREIADLVCEHSLMYSRGALGFLDYTDEEKQMFK 579
            M V+IR +  VFVGEVSGVDIT+ + P+ VAA+EAGMD+YAVLVF  Q +SDEQQM F++NFG +E+ARGGNVT+ EDKRL  GMNDVSNLGKDG+PL RDSRQRLFNLGN LWHSDSSFRAIPAKYSLLSAR+VN KGG+TEFADMRAAYD LD +TK EI  LVCEHSLMYSRG+LGF+DYTDEEKQ+FK
Sbjct:    1 MPVAIRQIHPVFVGEVSGVDITQAVSPEAVAAIEAGMDKYAVLVFRDQAVSDEQQMEFTRNFGSIENARGGNVTKDEDKRLANGMNDVSNLGKDGRPLGRDSRQRLFNLGNMLWHSDSSFRAIPAKYSLLSARVVNPKGGDTEFADMRAAYDELDQDTKAEIEPLVCEHSLMYSRGSLGFVDYTDEEKQLFK 192          
BLAST of mRNA_P-wetherbeei_contig20930.1.1 vs. uniprot
Match: A0A2V6QK26_9BACT (2,4-dichlorophenoxyacetate dioxygenase n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V6QK26_9BACT)

HSP 1 Score: 305 bits (780), Expect = 5.710e-102
Identity = 149/192 (77.60%), Postives = 168/192 (87.50%), Query Frame = 1
Query:    4 MAVSIRPLRDVFVGEVSGVDITKPLRPDEVAALEAGMDRYAVLVFHGQNISDEQQMAFSQNFGPLEDARGGNVTRPEDKRLGTGMNDVSNLGKDGKPLPRDSRQRLFNLGNSLWHSDSSFRAIPAKYSLLSARIVNAKGGNTEFADMRAAYDTLDDETKREIADLVCEHSLMYSRGALGFLDYTDEEKQMFK 579
            M VSIR +  VFVGEVSG+DI++ L  DE+AA+EAGMDRYAVLVFH Q ++DEQQMAFS+NFGPLEDARGGN+TRPEDKRL  GMNDVSNLGKDG+PL R+SR RLFNLGN LWHSDSSFR IPAKYSLLSAR+VN  GGNTEFADMRAAYD LD +TK  I DLVCEHSLMYSRG+LG LDY++EE+ MF+
Sbjct:    1 MNVSIRQIHPVFVGEVSGIDISRRLSRDEIAAVEAGMDRYAVLVFHDQKLTDEQQMAFSRNFGPLEDARGGNITRPEDKRLQVGMNDVSNLGKDGRPLDRESRVRLFNLGNMLWHSDSSFRPIPAKYSLLSARVVNPVGGNTEFADMRAAYDALDADTKALIEDLVCEHSLMYSRGSLGMLDYSEEERAMFR 192          
BLAST of mRNA_P-wetherbeei_contig20930.1.1 vs. uniprot
Match: A0A2V7CBI2_9BACT (2,4-dichlorophenoxyacetate dioxygenase n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V7CBI2_9BACT)

HSP 1 Score: 303 bits (777), Expect = 1.480e-101
Identity = 149/192 (77.60%), Postives = 168/192 (87.50%), Query Frame = 1
Query:    4 MAVSIRPLRDVFVGEVSGVDITKPLRPDEVAALEAGMDRYAVLVFHGQNISDEQQMAFSQNFGPLEDARGGNVTRPEDKRLGTGMNDVSNLGKDGKPLPRDSRQRLFNLGNSLWHSDSSFRAIPAKYSLLSARIVNAKGGNTEFADMRAAYDTLDDETKREIADLVCEHSLMYSRGALGFLDYTDEEKQMFK 579
            M +SIR +  VFVGEVSGVDIT+PL PDEVAA+EAGMDR AVLVF  Q I+DEQQMAFS+NFG LEDARGGN+T+PEDKRL  GMNDVSNLG+D +PL RDSR RLFNLGN LWHSDSSFRA+PAKYSLLSAR+VN  GGNTEFADMRAAYD+LD  TK +I DLVCEHSLMYSRG+LG LDY++EE+ MF+
Sbjct:    1 MNMSIRQIHPVFVGEVSGVDITRPLSPDEVAAIEAGMDRDAVLVFRDQRITDEQQMAFSRNFGALEDARGGNITKPEDKRLQVGMNDVSNLGRDSRPLDRDSRVRLFNLGNMLWHSDSSFRAVPAKYSLLSARVVNPVGGNTEFADMRAAYDSLDAPTKAQIEDLVCEHSLMYSRGSLGMLDYSEEERAMFR 192          
BLAST of mRNA_P-wetherbeei_contig20930.1.1 vs. uniprot
Match: A0A1Q7PDF2_9BACT (2,4-dichlorophenoxyacetate dioxygenase n=2 Tax=unclassified Candidatus Rokubacteria TaxID=2760815 RepID=A0A1Q7PDF2_9BACT)

HSP 1 Score: 301 bits (770), Expect = 1.650e-100
Identity = 148/192 (77.08%), Postives = 167/192 (86.98%), Query Frame = 1
Query:    4 MAVSIRPLRDVFVGEVSGVDITKPLRPDEVAALEAGMDRYAVLVFHGQNISDEQQMAFSQNFGPLEDARGGNVTRPEDKRLGTGMNDVSNLGKDGKPLPRDSRQRLFNLGNSLWHSDSSFRAIPAKYSLLSARIVNAKGGNTEFADMRAAYDTLDDETKREIADLVCEHSLMYSRGALGFLDYTDEEKQMFK 579
            M++SIR +  VFVGEVSGVDIT+PL P+EVAA+EAGMDRYAVLVFH Q ++D+QQMAFS+NFG LEDARGGN+TRPEDKRL  GMNDVSNLG+DG+PL RDSR RLFNLGN LWHSDSSFRA PAKYSLLSAR VN  GGNTEFADMRAAYD L    K +I DLVCEHSLMYSRG+LG LDY++EE+ MF+
Sbjct:    1 MSLSIRQIHPVFVGEVSGVDITRPLSPEEVAAVEAGMDRYAVLVFHDQKLTDDQQMAFSRNFGALEDARGGNITRPEDKRLQVGMNDVSNLGRDGRPLDRDSRVRLFNLGNMLWHSDSSFRATPAKYSLLSARGVNPTGGNTEFADMRAAYDALAAGLKGQIEDLVCEHSLMYSRGSLGMLDYSEEERAMFR 192          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20930.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C2QTX9_9HYPH2.770e-10678.65TauD/TfdA family dioxygenase n=1 Tax=Hyphomicrobia... [more]
A0A2V7CXI7_9BACT1.050e-10578.132,4-dichlorophenoxyacetate dioxygenase n=3 Tax=Can... [more]
A0A2V6YZJ4_9BACT6.770e-10577.082,4-dichlorophenoxyacetate dioxygenase (Fragment) ... [more]
A0A2V6QKE4_9BACT4.330e-10479.692,4-dichlorophenoxyacetate dioxygenase n=1 Tax=Can... [more]
A0A1B1U9J1_9BRAD4.460e-10376.562,4-dichlorophenoxyacetate dioxygenase n=9 Tax=Bra... [more]
A0A2V7BVR3_9BACT3.640e-10278.132,4-dichlorophenoxyacetate dioxygenase n=1 Tax=Can... [more]
A0A3N5N365_9HYPH5.160e-10277.60TauD/TfdA family dioxygenase n=1 Tax=Hyphomicrobia... [more]
A0A2V6QK26_9BACT5.710e-10277.602,4-dichlorophenoxyacetate dioxygenase n=1 Tax=Can... [more]
A0A2V7CBI2_9BACT1.480e-10177.602,4-dichlorophenoxyacetate dioxygenase n=1 Tax=Can... [more]
A0A1Q7PDF2_9BACT1.650e-10077.082,4-dichlorophenoxyacetate dioxygenase n=2 Tax=unc... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20930contigP-wetherbeei_contig20930:90..668 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1038859.AXAU01000012_gene4271
Preferred nameMA20_18150
PFAMsTauD
Model size579
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC01371,RC01372
KEGG koko:K06912
KEGG ReactionR05419,R05493
KEGG Pathwayko00361,ko01120,ko01220,map00361,map01120,map01220
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.73e-103
EggNOG OGsCOG2175@1|root,COG2175@2|Bacteria,1MVI6@1224|Proteobacteria,2TVHF@28211|Alphaproteobacteria,3JU8R@41294|Bradyrhizobiaceae
DescriptionTaurine catabolism dioxygenase TauD, TfdA family
Cds size576
COG categoryQ
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186212.314828-CDS-P-wetherbeei_contig20930:89..6651683186212.314828-CDS-P-wetherbeei_contig20930:89..665Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20930 90..665 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186212.326486-UTR-P-wetherbeei_contig20930:665..6681683186212.326486-UTR-P-wetherbeei_contig20930:665..668Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20930 666..668 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20930.1.1prot_P-wetherbeei_contig20930.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20930 90..665 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20930.1.1

>prot_P-wetherbeei_contig20930.1.1 ID=prot_P-wetherbeei_contig20930.1.1|Name=mRNA_P-wetherbeei_contig20930.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=192bp
MAVSIRPLRDVFVGEVSGVDITKPLRPDEVAALEAGMDRYAVLVFHGQNI
SDEQQMAFSQNFGPLEDARGGNVTRPEDKRLGTGMNDVSNLGKDGKPLPR
DSRQRLFNLGNSLWHSDSSFRAIPAKYSLLSARIVNAKGGNTEFADMRAA
YDTLDDETKREIADLVCEHSLMYSRGALGFLDYTDEEKQMFK
back to top

mRNA from alignment at P-wetherbeei_contig20930:90..668-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20930.1.1 ID=mRNA_P-wetherbeei_contig20930.1.1|Name=mRNA_P-wetherbeei_contig20930.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=579bp|location=Sequence derived from alignment at P-wetherbeei_contig20930:90..668- (Phaeothamnion wetherbeei SAG_119_79)
ACCATGGCTGTCAGCATCCGTCCGTTGCGCGACGTGTTCGTTGGCGAGGT CTCCGGCGTCGATATCACAAAGCCGCTTCGGCCGGACGAGGTCGCAGCCC TCGAAGCCGGCATGGACCGGTATGCGGTGCTGGTCTTTCACGGCCAGAAC ATTTCCGACGAACAGCAGATGGCGTTTTCGCAGAACTTCGGTCCGCTCGA GGATGCGCGCGGCGGCAACGTCACCAGGCCGGAGGACAAGCGTCTCGGCA CGGGGATGAACGACGTGTCCAATCTCGGCAAGGACGGCAAGCCGCTGCCG CGCGACTCGCGGCAACGGCTGTTCAATCTCGGCAATTCGCTCTGGCATTC GGACTCCTCGTTCCGCGCGATCCCGGCGAAGTATTCCCTGCTCTCGGCGC GCATCGTCAACGCGAAGGGCGGCAACACCGAATTCGCCGACATGCGCGCG GCCTATGACACGCTTGATGACGAGACGAAGCGCGAGATCGCGGACCTCGT CTGCGAACACTCGCTGATGTATTCGCGCGGCGCGCTCGGCTTCCTCGACT ACACCGATGAGGAAAAGCAGATGTTCAAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig20930:90..668-

>mRNA_P-wetherbeei_contig20930.1.1 ID=mRNA_P-wetherbeei_contig20930.1.1|Name=mRNA_P-wetherbeei_contig20930.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=576bp|location=Sequence derived from alignment at P-wetherbeei_contig20930:90..668- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGTCAGCATCCGTCCGTTGCGCGACGTGTTCGTTGGCGAGGTCTC
CGGCGTCGATATCACAAAGCCGCTTCGGCCGGACGAGGTCGCAGCCCTCG
AAGCCGGCATGGACCGGTATGCGGTGCTGGTCTTTCACGGCCAGAACATT
TCCGACGAACAGCAGATGGCGTTTTCGCAGAACTTCGGTCCGCTCGAGGA
TGCGCGCGGCGGCAACGTCACCAGGCCGGAGGACAAGCGTCTCGGCACGG
GGATGAACGACGTGTCCAATCTCGGCAAGGACGGCAAGCCGCTGCCGCGC
GACTCGCGGCAACGGCTGTTCAATCTCGGCAATTCGCTCTGGCATTCGGA
CTCCTCGTTCCGCGCGATCCCGGCGAAGTATTCCCTGCTCTCGGCGCGCA
TCGTCAACGCGAAGGGCGGCAACACCGAATTCGCCGACATGCGCGCGGCC
TATGACACGCTTGATGACGAGACGAAGCGCGAGATCGCGGACCTCGTCTG
CGAACACTCGCTGATGTATTCGCGCGGCGCGCTCGGCTTCCTCGACTACA
CCGATGAGGAAAAGCAGATGTTCAAG
back to top