mRNA_P-wetherbeei_contig20808.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig20808.2.1 vs. uniprot
Match: E9GSG7_DAPPU (PHD-type domain-containing protein (Fragment) n=1 Tax=Daphnia pulex TaxID=6669 RepID=E9GSG7_DAPPU) HSP 1 Score: 54.3 bits (129), Expect = 1.010e-8 Identity = 25/46 (54.35%), Postives = 28/46 (60.87%), Query Frame = 1
Query: 1 VCDQGGSLLCCETCPDVYHQHCLPEGPWRTVLVFLRDDEDWYCPKC 138
VC + G LLCCETCP VYH HCL + P V +EDW CP C
Sbjct: 12 VCHKVGDLLCCETCPAVYHLHCL-DPPLEHV-----PNEDWQCPIC 51
BLAST of mRNA_P-wetherbeei_contig20808.2.1 vs. uniprot
Match: A0A7J7CHN6_TRIWF (Chromatin remodeling complex subunit n=3 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7CHN6_TRIWF) HSP 1 Score: 57.0 bits (136), Expect = 3.050e-8 Identity = 24/46 (52.17%), Postives = 29/46 (63.04%), Query Frame = 1
Query: 1 VCDQGGSLLCCETCPDVYHQHCLPEGPWRTVLVFLRDDEDWYCPKC 138
VCD+GGSLLCCE+CP YH HCL + P + + W CPKC
Sbjct: 79 VCDRGGSLLCCESCPQTYHIHCL-DPPLKRIPTGT-----WKCPKC 118
BLAST of mRNA_P-wetherbeei_contig20808.2.1 vs. uniprot
Match: A0A7S1EPL3_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EPL3_9RHOD) HSP 1 Score: 55.8 bits (133), Expect = 7.790e-8 Identity = 23/46 (50.00%), Postives = 30/46 (65.22%), Query Frame = 1
Query: 1 VCDQGGSLLCCETCPDVYHQHCLPEGPWRTVLVFLRDDEDWYCPKC 138
VC +GG ++CC+ CPD YHQ CL E + ++ LRDD WYC C
Sbjct: 197 VCFKGGDVVCCDGCPDAYHQACLGEN-MKQLIDKLRDDR-WYCSDC 240
BLAST of mRNA_P-wetherbeei_contig20808.2.1 vs. uniprot
Match: A0A7S4D894_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D894_HETAK) HSP 1 Score: 53.9 bits (128), Expect = 1.200e-7 Identity = 22/46 (47.83%), Postives = 27/46 (58.70%), Query Frame = 1
Query: 1 VCDQGGSLLCCETCPDVYHQHCLPEGPWRTVLVFLRDDEDWYCPKC 138
+C+ GG L+CCE C DVYH CL P + L + DWYCP C
Sbjct: 90 ICNDGGDLICCEACDDVYHMECL--DPPLSALP----EGDWYCPTC 129
BLAST of mRNA_P-wetherbeei_contig20808.2.1 vs. uniprot
Match: X6M4J6_RETFI (PHD finger domain protein (Fragment) n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6M4J6_RETFI) HSP 1 Score: 55.1 bits (131), Expect = 1.460e-7 Identity = 22/46 (47.83%), Postives = 29/46 (63.04%), Query Frame = 1
Query: 1 VCDQGGSLLCCETCPDVYHQHCLPEGPWRTVLVFLRDDEDWYCPKC 138
VC GGSLLCCE CP V+H CL P + ++ L ++W+CP C
Sbjct: 433 VCRLGGSLLCCEGCPAVFHYRCLRPKPNKKLIEKL---DEWFCPSC 475
BLAST of mRNA_P-wetherbeei_contig20808.2.1 vs. uniprot
Match: A0A0P5ZVV0_9CRUS (Nucleosome-remodeling factor subunit NURF301 n=2 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5ZVV0_9CRUS) HSP 1 Score: 55.1 bits (131), Expect = 1.460e-7 Identity = 25/46 (54.35%), Postives = 28/46 (60.87%), Query Frame = 1
Query: 1 VCDQGGSLLCCETCPDVYHQHCLPEGPWRTVLVFLRDDEDWYCPKC 138
VC + G LLCCETCP VYH HCL + P V +EDW CP C
Sbjct: 364 VCHKVGDLLCCETCPAVYHLHCL-DPPLENV-----PNEDWQCPIC 403
BLAST of mRNA_P-wetherbeei_contig20808.2.1 vs. uniprot
Match: E9HRJ4_DAPPU (Uncharacterized protein (Fragment) n=2 Tax=Daphnia pulex TaxID=6669 RepID=E9HRJ4_DAPPU) HSP 1 Score: 54.3 bits (129), Expect = 2.730e-7 Identity = 25/46 (54.35%), Postives = 28/46 (60.87%), Query Frame = 1
Query: 1 VCDQGGSLLCCETCPDVYHQHCLPEGPWRTVLVFLRDDEDWYCPKC 138
VC + G LLCCETCP VYH HCL + P V +EDW CP C
Sbjct: 257 VCHKVGDLLCCETCPAVYHLHCL-DPPLEHV-----PNEDWQCPIC 296
BLAST of mRNA_P-wetherbeei_contig20808.2.1 vs. uniprot
Match: UPI00096B650F (chromodomain-helicase-DNA-binding protein Mi-2 homolog isoform X1 n=2 Tax=Aethina tumida TaxID=116153 RepID=UPI00096B650F) HSP 1 Score: 54.3 bits (129), Expect = 2.730e-7 Identity = 22/46 (47.83%), Postives = 27/46 (58.70%), Query Frame = 1
Query: 1 VCDQGGSLLCCETCPDVYHQHCLPEGPWRTVLVFLRDDEDWYCPKC 138
VC GG LLCC++CP+ YH HCL P + D DW CP+C
Sbjct: 425 VCKDGGELLCCDSCPNAYHTHCL-NPPLSEI-----PDGDWKCPRC 464
BLAST of mRNA_P-wetherbeei_contig20808.2.1 vs. uniprot
Match: A0A6H5JJY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY6_9PHAE) HSP 1 Score: 54.3 bits (129), Expect = 2.730e-7 Identity = 20/47 (42.55%), Postives = 27/47 (57.45%), Query Frame = 1
Query: 1 VCDQGGSLLCCETCPDVYHQHCLPEGPWRTVLVFLRDDED-WYCPKC 138
C + G L CC+ CP V+H+ CLP G + + +ED WYCP C
Sbjct: 789 ACGESGDLTCCDECPRVFHEECLPIGTDSHLAANRQTEEDPWYCPSC 835
BLAST of mRNA_P-wetherbeei_contig20808.2.1 vs. uniprot
Match: E9FXE2_DAPPU (Uncharacterized protein n=5 Tax=Daphnia TaxID=6668 RepID=E9FXE2_DAPPU) HSP 1 Score: 54.3 bits (129), Expect = 2.730e-7 Identity = 25/46 (54.35%), Postives = 28/46 (60.87%), Query Frame = 1
Query: 1 VCDQGGSLLCCETCPDVYHQHCLPEGPWRTVLVFLRDDEDWYCPKC 138
VC + G LLCCETCP VYH HCL + P V +EDW CP C
Sbjct: 364 VCHKVGDLLCCETCPAVYHLHCL-DPPLEHV-----PNEDWQCPIC 403 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20808.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig20808.2.1 >prot_P-wetherbeei_contig20808.2.1 ID=prot_P-wetherbeei_contig20808.2.1|Name=mRNA_P-wetherbeei_contig20808.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=46bp VCDQGGSLLCCETCPDVYHQHCLPEGPWRTVLVFLRDDEDWYCPKCback to top mRNA from alignment at P-wetherbeei_contig20808:563..700+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig20808.2.1 ID=mRNA_P-wetherbeei_contig20808.2.1|Name=mRNA_P-wetherbeei_contig20808.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=138bp|location=Sequence derived from alignment at P-wetherbeei_contig20808:563..700+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig20808:563..700+ >mRNA_P-wetherbeei_contig20808.2.1 ID=mRNA_P-wetherbeei_contig20808.2.1|Name=mRNA_P-wetherbeei_contig20808.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=138bp|location=Sequence derived from alignment at P-wetherbeei_contig20808:563..700+ (Phaeothamnion wetherbeei SAG_119_79)back to top |