mRNA_P-wetherbeei_contig20808.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20808.2.1
Unique NamemRNA_P-wetherbeei_contig20808.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20808.2.1 vs. uniprot
Match: E9GSG7_DAPPU (PHD-type domain-containing protein (Fragment) n=1 Tax=Daphnia pulex TaxID=6669 RepID=E9GSG7_DAPPU)

HSP 1 Score: 54.3 bits (129), Expect = 1.010e-8
Identity = 25/46 (54.35%), Postives = 28/46 (60.87%), Query Frame = 1
Query:    1 VCDQGGSLLCCETCPDVYHQHCLPEGPWRTVLVFLRDDEDWYCPKC 138
            VC + G LLCCETCP VYH HCL + P   V      +EDW CP C
Sbjct:   12 VCHKVGDLLCCETCPAVYHLHCL-DPPLEHV-----PNEDWQCPIC 51          
BLAST of mRNA_P-wetherbeei_contig20808.2.1 vs. uniprot
Match: A0A7J7CHN6_TRIWF (Chromatin remodeling complex subunit n=3 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7CHN6_TRIWF)

HSP 1 Score: 57.0 bits (136), Expect = 3.050e-8
Identity = 24/46 (52.17%), Postives = 29/46 (63.04%), Query Frame = 1
Query:    1 VCDQGGSLLCCETCPDVYHQHCLPEGPWRTVLVFLRDDEDWYCPKC 138
            VCD+GGSLLCCE+CP  YH HCL + P + +         W CPKC
Sbjct:   79 VCDRGGSLLCCESCPQTYHIHCL-DPPLKRIPTGT-----WKCPKC 118          
BLAST of mRNA_P-wetherbeei_contig20808.2.1 vs. uniprot
Match: A0A7S1EPL3_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EPL3_9RHOD)

HSP 1 Score: 55.8 bits (133), Expect = 7.790e-8
Identity = 23/46 (50.00%), Postives = 30/46 (65.22%), Query Frame = 1
Query:    1 VCDQGGSLLCCETCPDVYHQHCLPEGPWRTVLVFLRDDEDWYCPKC 138
            VC +GG ++CC+ CPD YHQ CL E   + ++  LRDD  WYC  C
Sbjct:  197 VCFKGGDVVCCDGCPDAYHQACLGEN-MKQLIDKLRDDR-WYCSDC 240          
BLAST of mRNA_P-wetherbeei_contig20808.2.1 vs. uniprot
Match: A0A7S4D894_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D894_HETAK)

HSP 1 Score: 53.9 bits (128), Expect = 1.200e-7
Identity = 22/46 (47.83%), Postives = 27/46 (58.70%), Query Frame = 1
Query:    1 VCDQGGSLLCCETCPDVYHQHCLPEGPWRTVLVFLRDDEDWYCPKC 138
            +C+ GG L+CCE C DVYH  CL   P  + L     + DWYCP C
Sbjct:   90 ICNDGGDLICCEACDDVYHMECL--DPPLSALP----EGDWYCPTC 129          
BLAST of mRNA_P-wetherbeei_contig20808.2.1 vs. uniprot
Match: X6M4J6_RETFI (PHD finger domain protein (Fragment) n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6M4J6_RETFI)

HSP 1 Score: 55.1 bits (131), Expect = 1.460e-7
Identity = 22/46 (47.83%), Postives = 29/46 (63.04%), Query Frame = 1
Query:    1 VCDQGGSLLCCETCPDVYHQHCLPEGPWRTVLVFLRDDEDWYCPKC 138
            VC  GGSLLCCE CP V+H  CL   P + ++  L   ++W+CP C
Sbjct:  433 VCRLGGSLLCCEGCPAVFHYRCLRPKPNKKLIEKL---DEWFCPSC 475          
BLAST of mRNA_P-wetherbeei_contig20808.2.1 vs. uniprot
Match: A0A0P5ZVV0_9CRUS (Nucleosome-remodeling factor subunit NURF301 n=2 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5ZVV0_9CRUS)

HSP 1 Score: 55.1 bits (131), Expect = 1.460e-7
Identity = 25/46 (54.35%), Postives = 28/46 (60.87%), Query Frame = 1
Query:    1 VCDQGGSLLCCETCPDVYHQHCLPEGPWRTVLVFLRDDEDWYCPKC 138
            VC + G LLCCETCP VYH HCL + P   V      +EDW CP C
Sbjct:  364 VCHKVGDLLCCETCPAVYHLHCL-DPPLENV-----PNEDWQCPIC 403          
BLAST of mRNA_P-wetherbeei_contig20808.2.1 vs. uniprot
Match: E9HRJ4_DAPPU (Uncharacterized protein (Fragment) n=2 Tax=Daphnia pulex TaxID=6669 RepID=E9HRJ4_DAPPU)

HSP 1 Score: 54.3 bits (129), Expect = 2.730e-7
Identity = 25/46 (54.35%), Postives = 28/46 (60.87%), Query Frame = 1
Query:    1 VCDQGGSLLCCETCPDVYHQHCLPEGPWRTVLVFLRDDEDWYCPKC 138
            VC + G LLCCETCP VYH HCL + P   V      +EDW CP C
Sbjct:  257 VCHKVGDLLCCETCPAVYHLHCL-DPPLEHV-----PNEDWQCPIC 296          
BLAST of mRNA_P-wetherbeei_contig20808.2.1 vs. uniprot
Match: UPI00096B650F (chromodomain-helicase-DNA-binding protein Mi-2 homolog isoform X1 n=2 Tax=Aethina tumida TaxID=116153 RepID=UPI00096B650F)

HSP 1 Score: 54.3 bits (129), Expect = 2.730e-7
Identity = 22/46 (47.83%), Postives = 27/46 (58.70%), Query Frame = 1
Query:    1 VCDQGGSLLCCETCPDVYHQHCLPEGPWRTVLVFLRDDEDWYCPKC 138
            VC  GG LLCC++CP+ YH HCL   P   +      D DW CP+C
Sbjct:  425 VCKDGGELLCCDSCPNAYHTHCL-NPPLSEI-----PDGDWKCPRC 464          
BLAST of mRNA_P-wetherbeei_contig20808.2.1 vs. uniprot
Match: A0A6H5JJY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY6_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 2.730e-7
Identity = 20/47 (42.55%), Postives = 27/47 (57.45%), Query Frame = 1
Query:    1 VCDQGGSLLCCETCPDVYHQHCLPEGPWRTVLVFLRDDED-WYCPKC 138
             C + G L CC+ CP V+H+ CLP G    +    + +ED WYCP C
Sbjct:  789 ACGESGDLTCCDECPRVFHEECLPIGTDSHLAANRQTEEDPWYCPSC 835          
BLAST of mRNA_P-wetherbeei_contig20808.2.1 vs. uniprot
Match: E9FXE2_DAPPU (Uncharacterized protein n=5 Tax=Daphnia TaxID=6668 RepID=E9FXE2_DAPPU)

HSP 1 Score: 54.3 bits (129), Expect = 2.730e-7
Identity = 25/46 (54.35%), Postives = 28/46 (60.87%), Query Frame = 1
Query:    1 VCDQGGSLLCCETCPDVYHQHCLPEGPWRTVLVFLRDDEDWYCPKC 138
            VC + G LLCCETCP VYH HCL + P   V      +EDW CP C
Sbjct:  364 VCHKVGDLLCCETCPAVYHLHCL-DPPLEHV-----PNEDWQCPIC 403          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20808.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
E9GSG7_DAPPU1.010e-854.35PHD-type domain-containing protein (Fragment) n=1 ... [more]
A0A7J7CHN6_TRIWF3.050e-852.17Chromatin remodeling complex subunit n=3 Tax=Tript... [more]
A0A7S1EPL3_9RHOD7.790e-850.00Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A7S4D894_HETAK1.200e-747.83Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
X6M4J6_RETFI1.460e-747.83PHD finger domain protein (Fragment) n=1 Tax=Retic... [more]
A0A0P5ZVV0_9CRUS1.460e-754.35Nucleosome-remodeling factor subunit NURF301 n=2 T... [more]
E9HRJ4_DAPPU2.730e-754.35Uncharacterized protein (Fragment) n=2 Tax=Daphnia... [more]
UPI00096B650F2.730e-747.83chromodomain-helicase-DNA-binding protein Mi-2 hom... [more]
A0A6H5JJY6_9PHAE2.730e-742.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
E9FXE2_DAPPU2.730e-754.35Uncharacterized protein n=5 Tax=Daphnia TaxID=6668... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20808contigP-wetherbeei_contig20808:563..700 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2903.EOD22166
PFAMsNHL,PHD
Model size138
Max annot lvl2759|Eukaryota
KEGG koko:K12035
KEGG Pathwayko05206,map05206
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue4.06e-11
EggNOG OGsKOG2177@1|root,KOG2177@2759|Eukaryota
EC2.3.2.27
Descriptionzinc ion binding
Cds size138
COG categoryO
BRITEko00000,ko00001,ko01000,ko03019,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186209.2706943-CDS-P-wetherbeei_contig20808:562..7001683186209.2706943-CDS-P-wetherbeei_contig20808:562..700Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20808 563..700 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20808.2.1prot_P-wetherbeei_contig20808.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20808 563..700 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20808.2.1

>prot_P-wetherbeei_contig20808.2.1 ID=prot_P-wetherbeei_contig20808.2.1|Name=mRNA_P-wetherbeei_contig20808.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=46bp
VCDQGGSLLCCETCPDVYHQHCLPEGPWRTVLVFLRDDEDWYCPKC
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mRNA from alignment at P-wetherbeei_contig20808:563..700+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20808.2.1 ID=mRNA_P-wetherbeei_contig20808.2.1|Name=mRNA_P-wetherbeei_contig20808.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=138bp|location=Sequence derived from alignment at P-wetherbeei_contig20808:563..700+ (Phaeothamnion wetherbeei SAG_119_79)
GTCTGCGATCAGGGCGGCTCCCTGCTGTGCTGCGAGACATGCCCGGACGT CTACCACCAGCACTGCCTCCCGGAGGGTCCGTGGCGGACCGTGCTGGTTT TCCTGCGGGACGATGAGGACTGGTACTGCCCGAAGTGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20808:563..700+

>mRNA_P-wetherbeei_contig20808.2.1 ID=mRNA_P-wetherbeei_contig20808.2.1|Name=mRNA_P-wetherbeei_contig20808.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=138bp|location=Sequence derived from alignment at P-wetherbeei_contig20808:563..700+ (Phaeothamnion wetherbeei SAG_119_79)
GTCTGCGATCAGGGCGGCTCCCTGCTGTGCTGCGAGACATGCCCGGACGT
CTACCACCAGCACTGCCTCCCGGAGGGTCCGTGGCGGACCGTGCTGGTTT
TCCTGCGGGACGATGAGGACTGGTACTGCCCGAAGTGT
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