mRNA_P-wetherbeei_contig2027.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2027.3.1
Unique NamemRNA_P-wetherbeei_contig2027.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig2027.3.1 vs. uniprot
Match: A0A6H5KSX2_9PHAE (RRM Nup35-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSX2_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 4.320e-11
Identity = 40/75 (53.33%), Postives = 52/75 (69.33%), Query Frame = 2 
Query:  704 AEWVMVYGFHAAAASEVFRRFQGLGSVVEQRAGPG-NWLFLRYATPLQADKVAAAGPYAMLSDHIMLGVQK-LDD 922
            A WV+V+G     +++V  RF   G VVEQR  PG NWL+L+YAT LQA+K  AAG  + L+D +MLGVQ+ LDD
Sbjct:  236 ATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQPGSNWLYLKYATRLQAEKALAAGHGSRLTDTVMLGVQRVLDD 310
[Close]
BLAST of mRNA_P-wetherbeei_contig2027.3.1 vs. uniprot
Match: A0A6A0H629_HYAAZ (Nucleoporin NUP35 n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A6A0H629_HYAAZ)

HSP 1 Score: 61.2 bits (147), Expect = 6.100e-7
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 2 
Query:  707 EWVMVYGFHAAAASEVFRRFQGLGSVVEQRA-GPGNWLFLRYATPLQADKVAAAGPYAMLSDHIMLGV 907
            EWV V+GF  A+AS +  +F  +G++ +QR  G GNW+ LRY TPL+A K  A     +LS  IM+GV
Sbjct:  147 EWVTVFGFPVASASFILTQFAQVGTIADQRLPGSGNWMHLRYQTPLEARKALALNG-KILSSSIMIGV 213
[Close]
BLAST of mRNA_P-wetherbeei_contig2027.3.1 vs. uniprot
Match: A0A8B7NKM8_HYAAZ (Nucleoporin NUP53 n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A8B7NKM8_HYAAZ)

HSP 1 Score: 61.2 bits (147), Expect = 6.800e-7
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 2 
Query:  707 EWVMVYGFHAAAASEVFRRFQGLGSVVEQRA-GPGNWLFLRYATPLQADKVAAAGPYAMLSDHIMLGV 907
            EWV V+GF  A+AS +  +F  +G++ +QR  G GNW+ LRY TPL+A K  A     +LS  IM+GV
Sbjct:  163 EWVTVFGFPVASASFILTQFAQVGTIADQRLPGSGNWMHLRYQTPLEARKALALNG-KILSSSIMIGV 229
[Close]
BLAST of mRNA_P-wetherbeei_contig2027.3.1 vs. uniprot
Match: A0A7S2Y0G3_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0G3_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 4.780e-6
Identity = 29/71 (40.85%), Postives = 44/71 (61.97%), Query Frame = 2 
Query:  746 SEVFRRFQGLGSVVEQRAGPGNWLFLRYATPLQADKVAAAGPYAMLSDHIMLGVQKLDDRTARRVGMTLAD 958
            +E+   F   G + E R G GNWLFLRYAT L A+K A      +L+   ++GV ++D+R A+R+G+ + D
Sbjct:    2 AELVESFARHGDLREHRLGAGNWLFLRYATRLHAEK-ALCQSGMLLNPTTVIGVARVDERVAQRLGLDVVD 71
[Close]
BLAST of mRNA_P-wetherbeei_contig2027.3.1 vs. uniprot
Match: M1UT25_CYAM1 (RRM Nup35-type domain-containing protein n=2 Tax=cellular organisms TaxID=131567 RepID=M1UT25_CYAM1)

HSP 1 Score: 55.5 bits (132), Expect = 6.470e-5
Identity = 28/75 (37.33%), Postives = 42/75 (56.00%), Query Frame = 2 
Query:  683 PRLDDPWAEWVMVYGFHAAAASEVFRRFQGLGSVVEQRAGPGNWLFLRYATPLQADKVAAAGPYAMLSDHIMLGV 907
            P  +   A WV V+GF     S+V R  +  G V+E R   GNW+ +RY +PLQA + A +    +L+D  M+G+
Sbjct:  189 PLQESELACWVTVFGFAPGQQSQVLRELRSFGPVLEHRLRKGNWMHVRYESPLQA-QAACSRSSRLLNDVTMIGI 262
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2027.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KSX2_9PHAE4.320e-1153.33RRM Nup35-type domain-containing protein n=1 Tax=E... [more]
A0A6A0H629_HYAAZ6.100e-747.06Nucleoporin NUP35 n=1 Tax=Hyalella azteca TaxID=29... [more]
A0A8B7NKM8_HYAAZ6.800e-747.06Nucleoporin NUP53 n=1 Tax=Hyalella azteca TaxID=29... [more]
A0A7S2Y0G3_9STRA4.780e-640.85Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
M1UT25_CYAM16.470e-537.33RRM Nup35-type domain-containing protein n=2 Tax=c... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2027contigP-wetherbeei_contig2027:1193..2270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog115417.EPrPW00000016742
PFAMsNup35_RRM
Model size1080
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.68e-09
EggNOG OGsKOG4285@1|root,KOG4285@2759|Eukaryota,1MF6B@121069|Pythiales
DescriptionNup53). Source PGD
Cds size582
COG categoryD
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186195.184799-UTR-P-wetherbeei_contig2027:1192..16881683186195.184799-UTR-P-wetherbeei_contig2027:1192..1688Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2027 1193..1688 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186195.193706-CDS-P-wetherbeei_contig2027:1688..22701683186195.193706-CDS-P-wetherbeei_contig2027:1688..2270Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2027 1689..2270 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2027.3.1prot_P-wetherbeei_contig2027.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2027 1689..2270 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2027.3.1

>prot_P-wetherbeei_contig2027.3.1 ID=prot_P-wetherbeei_contig2027.3.1|Name=mRNA_P-wetherbeei_contig2027.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=194bp
MPQRETPQQDYGLRQRRGGGGGDSASTPIFGKGSGLGGGGGGAFSASGAS
AGPPLLAPALPGPRLDDPWAEWVMVYGFHAAAASEVFRRFQGLGSVVEQR
AGPGNWLFLRYATPLQADKVAAAGPYAMLSDHIMLGVQKLDDRTARRVGM
TLADNGSVLLGGAAGTGAIPTDRTAWIPQPHGAAGNGVGGGFEG
back to top

mRNA from alignment at P-wetherbeei_contig2027:1193..2270+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2027.3.1 ID=mRNA_P-wetherbeei_contig2027.3.1|Name=mRNA_P-wetherbeei_contig2027.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1078bp|location=Sequence derived from alignment at P-wetherbeei_contig2027:1193..2270+ (Phaeothamnion wetherbeei SAG_119_79)
GCAGGACTACGGCCAGCAAGGCGGCGGCGGCGGCGGCAACGGTGGCGGTG
GTGGCGGAAGTTTTGAAGACGAGTTGTTTGGTCCCTCGGTGAGCCTCACA
TAAGCTTTTCGCAGCCTAAGAAACCTGTGTAAAGCCATTTTGTCGCATCC
CCGGCTTCCTCGTAGCATATCAGCTGTGTCAGTGTCCACTTTTGCGTCTT
GTAATGCCCAAATCTTCAAAACCCGGCAGCAAACAACGACGCAACAGGGG
CAGCCAGGCCGGAGCTACAACGGCGGAGCGGGATGGGCTTCGAGCGGGAC
AGATAGATATTCTCGGCGTCGTCTCGGCGGCGCGGCAGAAGCGTCAGGAT
TCTCCAGCCCCTTTAGCACTGGAAGAAGCAGGCCTCCTGCGCAGAGCCTC
TCAACAAACGGCAAGGGCACCGGCAACGGACGGCTGACGGACGATACGCC
GCCTCAAAAATCCATCTACGACGCTCCGGATGCCTACCCGGCCCTCATGC
CGCAGCGGGAGACGCCGCAGCAGGATTACGGCCTGCGGCAACGCCGCGGC
GGCGGCGGGGGCGACAGCGCCAGCACCCCCATCTTCGGCAAAGGCAGCGG
CCTCGGCGGCGGTGGCGGCGGCGCATTCTCCGCGTCAGGAGCCAGCGCCG
GTCCGCCGCTGCTCGCGCCGGCGCTGCCCGGCCCCCGCCTTGACGACCCC
TGGGCGGAGTGGGTCATGGTGTACGGCTTTCACGCCGCCGCCGCCTCGGA
GGTCTTCCGCCGCTTCCAGGGGCTCGGCAGCGTCGTGGAGCAGCGCGCCG
GACCGGGAAACTGGCTCTTTCTGCGCTACGCGACGCCGTTGCAGGCCGAT
AAGGTCGCGGCAGCGGGACCCTACGCTATGCTCTCGGACCACATCATGCT
CGGCGTACAAAAGCTCGATGATCGCACCGCCCGCCGCGTCGGCATGACGC
TCGCCGACAATGGCTCCGTCTTGCTCGGTGGCGCTGCCGGCACTGGCGCC
ATACCCACCGATCGGACGGCATGGATCCCGCAGCCGCACGGCGCCGCCGG
CAACGGCGTCGGCGGCGGCTTCGAGGGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig2027:1193..2270+

>mRNA_P-wetherbeei_contig2027.3.1 ID=mRNA_P-wetherbeei_contig2027.3.1|Name=mRNA_P-wetherbeei_contig2027.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=582bp|location=Sequence derived from alignment at P-wetherbeei_contig2027:1193..2270+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCAGCGGGAGACGCCGCAGCAGGATTACGGCCTGCGGCAACGCCG
CGGCGGCGGCGGGGGCGACAGCGCCAGCACCCCCATCTTCGGCAAAGGCA
GCGGCCTCGGCGGCGGTGGCGGCGGCGCATTCTCCGCGTCAGGAGCCAGC
GCCGGTCCGCCGCTGCTCGCGCCGGCGCTGCCCGGCCCCCGCCTTGACGA
CCCCTGGGCGGAGTGGGTCATGGTGTACGGCTTTCACGCCGCCGCCGCCT
CGGAGGTCTTCCGCCGCTTCCAGGGGCTCGGCAGCGTCGTGGAGCAGCGC
GCCGGACCGGGAAACTGGCTCTTTCTGCGCTACGCGACGCCGTTGCAGGC
CGATAAGGTCGCGGCAGCGGGACCCTACGCTATGCTCTCGGACCACATCA
TGCTCGGCGTACAAAAGCTCGATGATCGCACCGCCCGCCGCGTCGGCATG
ACGCTCGCCGACAATGGCTCCGTCTTGCTCGGTGGCGCTGCCGGCACTGG
CGCCATACCCACCGATCGGACGGCATGGATCCCGCAGCCGCACGGCGCCG
CCGGCAACGGCGTCGGCGGCGGCTTCGAGGGC
back to top