prot_P-wetherbeei_contig2027.3.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig2027.3.1
Unique Nameprot_P-wetherbeei_contig2027.3.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length194
Homology
BLAST of mRNA_P-wetherbeei_contig2027.3.1 vs. uniprot
Match: A0A6H5KSX2_9PHAE (RRM Nup35-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSX2_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 3.180e-12
Identity = 40/75 (53.33%), Postives = 52/75 (69.33%), Query Frame = 0
Query:   70 AEWVMVYGFHAAAASEVFRRFQGLGSVVEQRAGPG-NWLFLRYATPLQADKVAAAGPYAMLSDHIMLGVQK-LDD 142
            A WV+V+G     +++V  RF   G VVEQR  PG NWL+L+YAT LQA+K  AAG  + L+D +MLGVQ+ LDD
Sbjct:  236 ATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQPGSNWLYLKYATRLQAEKALAAGHGSRLTDTVMLGVQRVLDD 310          
BLAST of mRNA_P-wetherbeei_contig2027.3.1 vs. uniprot
Match: A0A6A0H629_HYAAZ (Nucleoporin NUP35 n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A6A0H629_HYAAZ)

HSP 1 Score: 61.2 bits (147), Expect = 8.360e-8
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 0
Query:   71 EWVMVYGFHAAAASEVFRRFQGLGSVVEQRA-GPGNWLFLRYATPLQADKVAAAGPYAMLSDHIMLGV 137
            EWV V+GF  A+AS +  +F  +G++ +QR  G GNW+ LRY TPL+A K  A     +LS  IM+GV
Sbjct:  147 EWVTVFGFPVASASFILTQFAQVGTIADQRLPGSGNWMHLRYQTPLEARKALALNG-KILSSSIMIGV 213          
BLAST of mRNA_P-wetherbeei_contig2027.3.1 vs. uniprot
Match: A0A8B7NKM8_HYAAZ (Nucleoporin NUP53 n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A8B7NKM8_HYAAZ)

HSP 1 Score: 61.2 bits (147), Expect = 9.060e-8
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 0
Query:   71 EWVMVYGFHAAAASEVFRRFQGLGSVVEQRA-GPGNWLFLRYATPLQADKVAAAGPYAMLSDHIMLGV 137
            EWV V+GF  A+AS +  +F  +G++ +QR  G GNW+ LRY TPL+A K  A     +LS  IM+GV
Sbjct:  163 EWVTVFGFPVASASFILTQFAQVGTIADQRLPGSGNWMHLRYQTPLEARKALALNG-KILSSSIMIGV 229          
BLAST of mRNA_P-wetherbeei_contig2027.3.1 vs. uniprot
Match: A0A7S2Y0G3_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0G3_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.070e-6
Identity = 29/71 (40.85%), Postives = 44/71 (61.97%), Query Frame = 0
Query:   84 SEVFRRFQGLGSVVEQRAGPGNWLFLRYATPLQADKVAAAGPYAMLSDHIMLGVQKLDDRTARRVGMTLAD 154
            +E+   F   G + E R G GNWLFLRYAT L A+K A      +L+   ++GV ++D+R A+R+G+ + D
Sbjct:    2 AELVESFARHGDLREHRLGAGNWLFLRYATRLHAEK-ALCQSGMLLNPTTVIGVARVDERVAQRLGLDVVD 71          
BLAST of mRNA_P-wetherbeei_contig2027.3.1 vs. uniprot
Match: M1UT25_CYAM1 (RRM Nup35-type domain-containing protein n=2 Tax=cellular organisms TaxID=131567 RepID=M1UT25_CYAM1)

HSP 1 Score: 55.5 bits (132), Expect = 1.020e-5
Identity = 28/75 (37.33%), Postives = 42/75 (56.00%), Query Frame = 0
Query:   63 PRLDDPWAEWVMVYGFHAAAASEVFRRFQGLGSVVEQRAGPGNWLFLRYATPLQADKVAAAGPYAMLSDHIMLGV 137
            P  +   A WV V+GF     S+V R  +  G V+E R   GNW+ +RY +PLQA + A +    +L+D  M+G+
Sbjct:  189 PLQESELACWVTVFGFAPGQQSQVLRELRSFGPVLEHRLRKGNWMHVRYESPLQA-QAACSRSSRLLNDVTMIGI 262          
BLAST of mRNA_P-wetherbeei_contig2027.3.1 vs. uniprot
Match: A0A7J7IF51_9RHOD (Nucleoporin n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IF51_9RHOD)

HSP 1 Score: 54.3 bits (129), Expect = 2.530e-5
Identity = 25/75 (33.33%), Postives = 43/75 (57.33%), Query Frame = 0
Query:   63 PRLDDPWAEWVMVYGFHAAAASEVFRRFQGLGSVVEQRAGPGNWLFLRYATPLQADKVAAAGPYAMLSDHIMLGV 137
            P  +   + WV V+GF     S+V R  +  G V+E R   GNW+ +R+ +PLQA + A +    +++D +M+G+
Sbjct:  187 PLQEGELSRWVTVFGFAPGQQSQVLRELRSFGQVLEHRLRKGNWMHVRFESPLQA-QAACSRSSRLVNDAMMIGI 260          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2027.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KSX2_9PHAE3.180e-1253.33RRM Nup35-type domain-containing protein n=1 Tax=E... [more]
A0A6A0H629_HYAAZ8.360e-847.06Nucleoporin NUP35 n=1 Tax=Hyalella azteca TaxID=29... [more]
A0A8B7NKM8_HYAAZ9.060e-847.06Nucleoporin NUP53 n=1 Tax=Hyalella azteca TaxID=29... [more]
A0A7S2Y0G3_9STRA1.070e-640.85Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
M1UT25_CYAM11.020e-537.33RRM Nup35-type domain-containing protein n=2 Tax=c... [more]
A0A7J7IF51_9RHOD2.530e-533.33Nucleoporin n=1 Tax=Cyanidiococcus yangmingshanens... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 69..139
e-value: 1.2E-12
score: 49.6
IPR007846RNA-recognition motif (RRM) Nup35-type domainPFAMPF05172Nup35_RRMcoord: 71..142
e-value: 4.7E-7
score: 29.7
IPR007846RNA-recognition motif (RRM) Nup35-type domainPROSITEPS51472RRM_NUP35coord: 67..147
score: 16.666885
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2027contigP-wetherbeei_contig2027:1689..2270 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2027.3.1mRNA_P-wetherbeei_contig2027.3.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig2027 1193..2270 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig2027.3.1 ID=prot_P-wetherbeei_contig2027.3.1|Name=mRNA_P-wetherbeei_contig2027.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=194bp
MPQRETPQQDYGLRQRRGGGGGDSASTPIFGKGSGLGGGGGGAFSASGAS
AGPPLLAPALPGPRLDDPWAEWVMVYGFHAAAASEVFRRFQGLGSVVEQR
AGPGNWLFLRYATPLQADKVAAAGPYAMLSDHIMLGVQKLDDRTARRVGM
TLADNGSVLLGGAAGTGAIPTDRTAWIPQPHGAAGNGVGGGFEG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR007846RRM_NUP35_dom