mRNA_P-wetherbeei_contig20093.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20093.1.1
Unique NamemRNA_P-wetherbeei_contig20093.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20093.1.1 vs. uniprot
Match: A0A847ZSL4_9HYPH (DeoR/GlpR transcriptional regulator n=1 Tax=Phyllobacteriaceae bacterium TaxID=1871068 RepID=A0A847ZSL4_9HYPH)

HSP 1 Score: 333 bits (853), Expect = 2.770e-112
Identity = 163/258 (63.18%), Postives = 208/258 (80.62%), Query Frame = 1
Query:    1 MHERERWQMILGAIKDRAVVTVRELIARTGASPATLRRDLAKLEEAGQIKRVHGGVEALNFDDRPHLETRAFEASQSMRASAKRAISRAAAGLCQDNDSIIINAGTTTFQMVDFLRDRKMQIITNSFPIAEALVAQSENRIIMPGGEIYREQGIVLSPFDGDASQHYTASKMFMSCFSFGPLGVIEGDALIARAEAKLLGRADKLIVLADSSKFETRGSMAVCPLSRVHTLITDDEAPEAVLDQVRQAGVNVIVVSAE 774
            MHERERWQ+IL  +++R V+ +REL+  T ASPATLRRD+ KLEE GQ++RVHGG+E +    + +L TRAF  SQ++ A+ KRA++RAAA +CQD +SIIINAG+TT+ M ++LR+ ++QI+TNSFPIA+ L+    NRI++PGGEIYREQGI+LSPFD DA QH+TASKMFMSC++   +G+IEGD LIARAEAKLL RA+ L+VLADSSKFE RGSMAVC  SRVHTLITD+ AP A+LD +R  GV VI+   E
Sbjct:    1 MHERERWQLILKQVRERGVIRLRELVTLTHASPATLRRDVTKLEEMGQLRRVHGGIEVIEAAQQTNLATRAFGVSQTINATRKRALARAAAAMCQDGESIIINAGSTTWFMAEYLRESRLQILTNSFPIAQELIVTGNNRIVVPGGEIYREQGIILSPFDEDAIQHFTASKMFMSCYAITQMGIIEGDPLIARAEAKLLSRAEHLVVLADSSKFEPRGSMAVCQFSRVHTLITDNGAPAALLDHIRSRGVQVIIAEDE 258          
BLAST of mRNA_P-wetherbeei_contig20093.1.1 vs. uniprot
Match: UPI001BC2C7F6 (DeoR/GlpR transcriptional regulator n=5 Tax=Rhodobacteraceae TaxID=31989 RepID=UPI001BC2C7F6)

HSP 1 Score: 315 bits (808), Expect = 2.590e-105
Identity = 159/266 (59.77%), Postives = 205/266 (77.07%), Query Frame = 1
Query:    1 MHERERWQMILGAIKDRAVVTVRELIARTGASPATLRRDLAKLEEAGQIKRVHGGVEALNFDDRPHLETRAFEASQSMRASAKRAISRAAAGLCQDNDSIIINAGTTTFQMVDFLRDRKMQIITNSFPIAEALVAQSENRIIMPGGEIYREQGIVLSPFDGDASQHYTASKMFMSCFSFGPLGVIEGDALIARAEAKLLGRADKLIVLADSSKFETRGSMAVCPLSRVHTLITDDEAPEAVLDQVRQAGVNVIVVSAERADVSFAA 798
            MHERERWQ+IL  ++DR +V V +L+  TGAS ATLRRDLAKLE+ GQ++RVHGG E++     P L   +F+ASQ++ A  K+A+++ AA LCQD DSII+NAG+TT+ M   LR  +MQ++TNSFPIA+ L+A S NR+++PGGE+YRE GI+LSPFD DA QH+ ASKMFMSC+S  PLG+IE D L+ARAEAKLL R + LIV+ADSSKFE RG+M VCPL+RV TL+TD  AP  +LD +RQ GV VI++  + A V  AA
Sbjct:   11 MHERERWQLILTRLRDRGIVRVADLVGVTGASVATLRRDLAKLEDTGQLRRVHGGAESVASGQTP-LTAPSFDASQTLNADLKQAVAQGAANLCQDGDSIILNAGSTTWFMAQCLRGHRMQVLTNSFPIAQELIAHSMNRVVLPGGELYREAGIILSPFDEDAIQHFAASKMFMSCYSITPLGIIESDPLVARAEAKLLTRTENLIVVADSSKFEARGNMVVCPLTRVSTLVTDTGAPPHMLDHLRQLGVEVILIDPKAAKVLTAA 275          
BLAST of mRNA_P-wetherbeei_contig20093.1.1 vs. uniprot
Match: UPI001D083148 (DeoR/GlpR family DNA-binding transcription regulator n=1 Tax=Rhodobacter sp. Har01 TaxID=2883999 RepID=UPI001D083148)

HSP 1 Score: 308 bits (789), Expect = 1.470e-102
Identity = 152/266 (57.14%), Postives = 200/266 (75.19%), Query Frame = 1
Query:    1 MHERERWQMILGAIKDRAVVTVRELIARTGASPATLRRDLAKLEEAGQIKRVHGGVEALNFDDRPHLETRAFEASQSMRASAKRAISRAAAGLCQDNDSIIINAGTTTFQMVDFLRDRKMQIITNSFPIAEALVAQSENRIIMPGGEIYREQGIVLSPFDGDASQHYTASKMFMSCFSFGPLGVIEGDALIARAEAKLLGRADKLIVLADSSKFETRGSMAVCPLSRVHTLITDDEAPEAVLDQVRQAGVNVIVVSAERADVSFAA 798
            MHERERW +IL  +++R +V + +L A TGAS ATLRRDLAKLE++GQ++RVHGG E      +  L   +F ASQ+  A+ KRA++  AAGLC+D DSII+NAG+TT+ +   LR  +MQ++TNSFPIA+ L+A S NR+++PGGE+YRE GI+LSPFD DA QH+ ASKMFMSC++  PLGVIE D LIARAEAKLL R ++LIV+ADSSKFE RG+M VCPLSRV T++TD  AP  +++ +R  GV V++   +   V  AA
Sbjct:    1 MHERERWHLILNRLRERGIVRIGDLAALTGASVATLRRDLAKLEDSGQLRRVHGGAEGAGVSGQNELTATSFGASQTQHATEKRAVAALAAGLCEDGDSIILNAGSTTWFLAQCLRGHRMQVLTNSFPIAQELIAHSANRVVLPGGELYREPGIILSPFDEDAIQHFAASKMFMSCYAITPLGVIESDPLIARAEAKLLTRTERLIVVADSSKFEARGNMVVCPLSRVSTVVTDTGAPPQMVEHLRSVGVEVLIADPQERKVLTAA 266          
BLAST of mRNA_P-wetherbeei_contig20093.1.1 vs. uniprot
Match: A0A317I2H3_9PROT (DeoR family transcriptional regulator n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A317I2H3_9PROT)

HSP 1 Score: 305 bits (780), Expect = 3.910e-101
Identity = 150/263 (57.03%), Postives = 203/263 (77.19%), Query Frame = 1
Query:    1 MHERERWQMILGAIKDRAVVTVRELIARTGASPATLRRDLAKLEEAGQIKRVHGGVEALNFD-----DRPHLETRAFEASQSMRASAKRAISRAAAGLCQDNDSIIINAGTTTFQMVDFLRDRKMQIITNSFPIAEALVAQSENRIIMPGGEIYREQGIVLSPFDGDASQHYTASKMFMSCFSFGPLGVIEGDALIARAEAKLLGRADKLIVLADSSKFETRGSMAVCPLSRVHTLITDDEAPEAVLDQVRQAGVNVIVVSAE 774
            MHERERWQ+I   +++R++V + +    TGAS AT+RRD A L E G   RVHGG+EAL+       D P L TR+F+ SQ++   AKRAI+++A  LC D ++IIIN GTTT+QM ++LR+R+++++TNS+P+AE L+  S+ R+ +PGGE+YREQG+++SPFD DA QHY+A++MFMS  S GPLGVIEGD L+ARAE+KLL RADKLIVLADSSKF +RGS+ VCPLSR+HTL+TD  AP   LD +R  GV+++VV A+
Sbjct:    1 MHERERWQVIKALLRERSLVRIADACRATGASEATVRRDFASLAEQGVAVRVHGGLEALHDTANARGDVPSLATRSFDVSQTLNIDAKRAIAKSAVALCIDGETIIINGGTTTYQMGEYLRERRLKVLTNSYPLAEILIHHSKCRVALPGGEVYREQGMIVSPFDEDAIQHYSATRMFMSAISIGPLGVIEGDPLLARAESKLLKRADKLIVLADSSKFVSRGSLVVCPLSRIHTLVTDSGAPRPALDMLRDNGVHIVVVDAD 263          
BLAST of mRNA_P-wetherbeei_contig20093.1.1 vs. uniprot
Match: V7EQY4_9RHOB (DeoR faimly transcriptional regulator n=1 Tax=Rhodobacter sp. CACIA14H1 TaxID=1408890 RepID=V7EQY4_9RHOB)

HSP 1 Score: 303 bits (777), Expect = 9.750e-101
Identity = 154/266 (57.89%), Postives = 201/266 (75.56%), Query Frame = 1
Query:    1 MHERERWQMILGAIKDRAVVTVRELIARTGASPATLRRDLAKLEEAGQIKRVHGGVEALNFDDRPHLETRAFEASQSMRASAKRAISRAAAGLCQDNDSIIINAGTTTFQMVDFLRDRKMQIITNSFPIAEALVAQSENRIIMPGGEIYREQGIVLSPFDGDASQHYTASKMFMSCFSFGPLGVIEGDALIARAEAKLLGRADKLIVLADSSKFETRGSMAVCPLSRVHTLITDDEAPEAVLDQVRQAGVNVIVVSAERADVSFAA 798
            MHERERW +IL  +++R +V V +L   TGAS ATLRRDLAKLE++GQ++RVHGG E      +  L   +F ASQ++ A+ K+AI+ AAAGLC+D DSII+NAG+TT+ M   LR ++MQ++TNSFPIA+ L+A S NR+++PGGE+YRE GI+LSPFD DA QH+ ASKMFMS ++  PLGVIE D LIARAEAKLL R ++LIVL DSSKFE RG++ VCPL+RV T+ITD  AP+ ++D +R  GV VI+   +   V  AA
Sbjct:    1 MHERERWTLILTKLRERGIVRVSDLALWTGASVATLRRDLAKLEDSGQLRRVHGGAEQAEVSGQNELTATSFGASQTIHATEKQAIAAAAAGLCEDGDSIILNAGSTTWFMAQCLRAKRMQVLTNSFPIAQELIANSANRVVLPGGELYREPGIILSPFDEDAIQHFAASKMFMSAYAITPLGVIESDPLIARAEAKLLSRTERLIVLVDSSKFEARGNIVVCPLTRVSTVITDTGAPQHMVDHLRGVGVEVILTDPKDVKVPAAA 266          
BLAST of mRNA_P-wetherbeei_contig20093.1.1 vs. uniprot
Match: A0A2S9QHG1_9HYPH (DeoR family transcriptional regulator n=4 Tax=Labrys TaxID=204476 RepID=A0A2S9QHG1_9HYPH)

HSP 1 Score: 303 bits (776), Expect = 1.130e-100
Identity = 157/255 (61.57%), Postives = 193/255 (75.69%), Query Frame = 1
Query:    1 MHERERWQMILGAIKDRAVVTVRELIARTGASPATLRRDLAKLEEAGQIKRVHGGVEALNFDDRPHLETRAFEASQSMRASAKRAISRAAAGLCQDNDSIIINAGTTTFQMVDFLRDRKMQIITNSFPIAEALVAQSENRIIMPGGEIYREQGIVLSPFDGDASQHYTASKMFMSCFSFGPLGVIEGDALIARAEAKLLGRADKLIVLADSSKFETRGSMAVCPLSRVHTLITDDEAPEAVLDQVRQAGVNVIVV 765
            MHE+ERWQ I+  +++R+V++ REL A T ASPAT+RRDL  L   G ++R+HGGV AL   +   LE R F  SQ++ A  KRA++  AA LC+D +SIIIN G+TTF MV+FLR  ++QI+TNSFPIA AL+  S+NRII+PGGEIYR+Q ++LSPFD D+ QHYTASKMFMS  S GPLG+IE D LIARAEAKLL RA  LIVLADSSKFE RGSMAV PLSR+  LITDD  P A  D + +AGV V +V
Sbjct:    1 MHEQERWQAIVRLVQERSVISARELAAVTRASPATIRRDLTHLAAQGMVRRMHGGVRALASPEGSTLEARRFGVSQALNAGRKRAVAERAAALCRDGESIIINGGSTTFHMVEFLRTSRLQILTNSFPIAAALMQDSDNRIILPGGEIYRDQSLILSPFDQDSIQHYTASKMFMSAASIGPLGLIESDPLIARAEAKLLTRAADLIVLADSSKFEPRGSMAVAPLSRIRRLITDDGIPPAARDMLAEAGVEVEIV 255          
BLAST of mRNA_P-wetherbeei_contig20093.1.1 vs. uniprot
Match: UPI00131C5B89 (DeoR/GlpR family DNA-binding transcription regulator n=1 Tax=Methylocapsa sp. S129 TaxID=1641869 RepID=UPI00131C5B89)

HSP 1 Score: 301 bits (771), Expect = 1.040e-99
Identity = 152/268 (56.72%), Postives = 203/268 (75.75%), Query Frame = 1
Query:    1 MHERERWQMILGAIKDRAVVTVRELIARTGASPATLRRDLAKLEEAGQIKRVHGGVEA-----LNFDDRPHLETRAFEASQSMRASAKRAISRAAAGLCQDNDSIIINAGTTTFQMVDFLRDRKMQIITNSFPIAEALVAQSENRIIMPGGEIYREQGIVLSPFDGDASQHYTASKMFMSCFSFGPLGVIEGDALIARAEAKLLGRADKLIVLADSSKFETRGSMAVCPLSRVHTLITDDEAPEAVLDQVRQAGVNVIVVSAERADVS 789
            MHERERWQ+I   +K+  +V + ++   TGAS A++RRD A+L E G   RVHGG+EA     L  +D P L TR+FE S+++  +AKRAI++AA  LC D D+IIIN GTTTF+M +FLR+R+++++TNS+P+AE L+  S+ R+ +PGGE+YREQ +++SPF+ DA QHY+AS+MFMS  S GPLGVIEGD LIARAE KLL RADKL+VLADSSKF +RGS+ VCPLSR+  LITD+ A  A LD +R+AGV V +V  + A +S
Sbjct:    1 MHERERWQVIKAMLKEHTLVRIADVCRATGASEASVRRDFARLAELGSATRVHGGLEAIPGSQLASNDAPALATRSFEISKTLNVAAKRAIAKAAVALCSDGDAIIINGGTTTFEMGEFLRERRLKVLTNSYPLAETLIHDSKCRVALPGGEVYREQKLIVSPFEEDAIQHYSASRMFMSAISIGPLGVIEGDPLIARAETKLLKRADKLVVLADSSKFASRGSLVVCPLSRIDILITDNGASAAALDMLREAGVQVQLVDIDAAGLS 268          
BLAST of mRNA_P-wetherbeei_contig20093.1.1 vs. uniprot
Match: A0A2M7YA25_9RHOB (DeoR family transcriptional regulator n=3 Tax=unclassified Rhodobacterales TaxID=285892 RepID=A0A2M7YA25_9RHOB)

HSP 1 Score: 297 bits (760), Expect = 3.720e-98
Identity = 160/266 (60.15%), Postives = 194/266 (72.93%), Query Frame = 1
Query:    1 MHERERWQMILGAIKDRAVVTVRELIARTGASPATLRRDLAKLEEAGQIKRVHGGVEALNFDDRPHLETRAFEASQSMRASAKRAISRAAAGLCQDNDSIIINAGTTTFQMVDFLRDRKMQIITNSFPIAEALVAQSENRIIMPGGEIYREQGIVLSPFDGDASQHYTASKMFMSCFSFGPLGVIEGDALIARAEAKLLGRADKLIVLADSSKFETRGSMAVCPLSRVHTLITDDEAPEAVLDQVRQAGVNVIVVSAERADVSFAA 798
            M E ER +MI   +  R    VR+L   TGASPATLRRDLAKL  AG ++RVHGGVEA   D RP L T  F+  Q+   +AKRAI+RAAA LC D ++II+NAG+TTFQM  FLR+R++QI+TNSFP+A ALV  S+NR+++PGGEIYREQGIVLSPFD DA +H  A +MFMS  + GPLGVIEGD LIARAEAKLL RA +L+VL DS KF   G++AVCPL+RV  LITDD AP   L  +R AGV V VV+ +  D +  A
Sbjct:    1 MVESERVRMIAALVAARGFAAVRDLTEATGASPATLRRDLAKLAAAGAVRRVHGGVEAA--DARPRLATSPFDIGQTRAVAAKRAIARAAAALCADGETIIVNAGSTTFQMAAFLRERRLQIVTNSFPMAAALVETSDNRVLIPGGEIYREQGIVLSPFDDDALRHVAACRMFMSAVTVGPLGVIEGDPLIARAEAKLLDRAPELVVLLDSGKFARHGALAVCPLARVSRLITDDAAPPEALAMLRDAGVAVTVVAPDAEDRALGA 264          
BLAST of mRNA_P-wetherbeei_contig20093.1.1 vs. uniprot
Match: H0TVP3_9BRAD (Transcriptional regulator, DeoR family n=1 Tax=Bradyrhizobium sp. STM 3843 TaxID=551947 RepID=H0TVP3_9BRAD)

HSP 1 Score: 297 bits (760), Expect = 4.250e-98
Identity = 151/265 (56.98%), Postives = 197/265 (74.34%), Query Frame = 1
Query:    1 MHERERWQMILGAIKDRAVVTVRELIARTGASPATLRRDLAKLEEAGQIKRVHGGVEALNFDDRPH--------LETRAFEASQSMRASAKRAISRAAAGLCQDNDSIIINAGTTTFQMVDFLRDRKMQIITNSFPIAEALVAQSENRIIMPGGEIYREQGIVLSPFDGDASQHYTASKMFMSCFSFGPLGVIEGDALIARAEAKLLGRADKLIVLADSSKFETRGSMAVCPLSRVHTLITDDEAPEAVLDQVRQAGVNVIVVSA 771
            MHERERWQ+I   +++R++V + +    TGAS A++RRD A L   G   RV GG+EAL     PH        L TR+F+ SQ++   AKR I++AA  LC D D+IIIN GTTT+QM D+LRDR+++++TNS+P+AE L+  S+ R+ +PGGEIYREQG+++SPF+ DA QHY+A++MFMS  S GPLGVIEGD L+ARAE+KLL RA+KLIVLADSSKF  RGS+ VCPLSR+HTL+TD  AP   +D +RQ GV VIVV A
Sbjct:    1 MHERERWQVIKTLLRERSLVRIVDACRATGASEASVRRDFASLAAQGVASRVRGGLEALAA---PHPTPGDVVTLATRSFDVSQTLNIDAKRTIAKAAVALCTDGDTIIINGGTTTYQMGDYLRDRRLKVLTNSYPLAEILIHHSKCRVALPGGEIYREQGVIVSPFEEDAIQHYSATRMFMSAISIGPLGVIEGDPLLARAESKLLKRAEKLIVLADSSKFAARGSLVVCPLSRIHTLVTDSGAPHTAIDMLRQHGVEVIVVDA 262          
BLAST of mRNA_P-wetherbeei_contig20093.1.1 vs. uniprot
Match: UPI001FEFC3B0 (DeoR/GlpR family DNA-binding transcription regulator n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=UPI001FEFC3B0)

HSP 1 Score: 296 bits (758), Expect = 6.110e-98
Identity = 147/244 (60.25%), Postives = 185/244 (75.82%), Query Frame = 1
Query:   31 LGAIKDRAVVTVRELIARTGASPATLRRDLAKLEEAGQIKRVHGGVEALNFDDRPHLETRAFEASQSMRASAKRAISRAAAGLCQDNDSIIINAGTTTFQMVDFLRDRKMQIITNSFPIAEALVAQSENRIIMPGGEIYREQGIVLSPFDGDASQHYTASKMFMSCFSFGPLGVIEGDALIARAEAKLLGRADKLIVLADSSKFETRGSMAVCPLSRVHTLITDDEAPEAVLDQVRQAGVNVIV 762
            +  ++ R V+ VR+L+  TGAS AT+RRDL KL E GQI R+HGG+E     ++PHL TRAF  SQ +  + KRA++ AAA LC D +SII+NAG+T + M +FLR +++QI+TNSFPIA+ L+A S NRII+ GGE+YREQGI+LSPFD DA Q +TASKMFMSC S   +GVIEGD L+ R+E KLL RADKLIV+ADSSKFE RGSM VC  SRVHTLITD+ AP  +L  +R  GV VI+
Sbjct:    1 MAQVRQRGVIRVRDLVNATGASSATIRRDLTKLMEMGQINRIHGGIEMREMPEQPHLATRAFGVSQGLNVAKKRAVAAAAAQLCNDGESIILNAGSTMWYMAEFLRQKQLQILTNSFPIAQELIATSNNRIILAGGEVYREQGIILSPFDEDAIQQFTASKMFMSCSSITSMGVIEGDPLVTRSETKLLSRADKLIVVADSSKFEPRGSMVVCKFSRVHTLITDEGAPAELLKHIRDQGVEVII 244          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20093.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A847ZSL4_9HYPH2.770e-11263.18DeoR/GlpR transcriptional regulator n=1 Tax=Phyllo... [more]
UPI001BC2C7F62.590e-10559.77DeoR/GlpR transcriptional regulator n=5 Tax=Rhodob... [more]
UPI001D0831481.470e-10257.14DeoR/GlpR family DNA-binding transcription regulat... [more]
A0A317I2H3_9PROT3.910e-10157.03DeoR family transcriptional regulator n=1 Tax=Prot... [more]
V7EQY4_9RHOB9.750e-10157.89DeoR faimly transcriptional regulator n=1 Tax=Rhod... [more]
A0A2S9QHG1_9HYPH1.130e-10061.57DeoR family transcriptional regulator n=4 Tax=Labr... [more]
UPI00131C5B891.040e-9956.72DeoR/GlpR family DNA-binding transcription regulat... [more]
A0A2M7YA25_9RHOB3.720e-9860.15DeoR family transcriptional regulator n=3 Tax=uncl... [more]
H0TVP3_9BRAD4.250e-9856.98Transcriptional regulator, DeoR family n=1 Tax=Bra... [more]
UPI001FEFC3B06.110e-9860.25DeoR/GlpR family DNA-binding transcription regulat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20093contigP-wetherbeei_contig20093:26..826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1245469.S58_53260
Preferred nameulaR
PFAMsDeoRC,HTH_DeoR
Model size801
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03477
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.82e-98
EggNOG OGsCOG1349@1|root,COG1349@2|Bacteria,1QM4U@1224|Proteobacteria,2TU6A@28211|Alphaproteobacteria,3JTZE@41294|Bradyrhizobiaceae
DescriptionDeoR C terminal sensor domain
Cds size801
COG categoryGK
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186190.5365987-CDS-P-wetherbeei_contig20093:25..8261683186190.5365987-CDS-P-wetherbeei_contig20093:25..826Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20093 26..826 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20093.1.1prot_P-wetherbeei_contig20093.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20093 26..826 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20093.1.1

>prot_P-wetherbeei_contig20093.1.1 ID=prot_P-wetherbeei_contig20093.1.1|Name=mRNA_P-wetherbeei_contig20093.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=267bp
MHERERWQMILGAIKDRAVVTVRELIARTGASPATLRRDLAKLEEAGQIK
RVHGGVEALNFDDRPHLETRAFEASQSMRASAKRAISRAAAGLCQDNDSI
IINAGTTTFQMVDFLRDRKMQIITNSFPIAEALVAQSENRIIMPGGEIYR
EQGIVLSPFDGDASQHYTASKMFMSCFSFGPLGVIEGDALIARAEAKLLG
RADKLIVLADSSKFETRGSMAVCPLSRVHTLITDDEAPEAVLDQVRQAGV
NVIVVSAERADVSFAA*
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mRNA from alignment at P-wetherbeei_contig20093:26..826-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20093.1.1 ID=mRNA_P-wetherbeei_contig20093.1.1|Name=mRNA_P-wetherbeei_contig20093.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=801bp|location=Sequence derived from alignment at P-wetherbeei_contig20093:26..826- (Phaeothamnion wetherbeei SAG_119_79)
ATGCACGAACGGGAACGCTGGCAGATGATACTCGGAGCGATCAAGGATCG CGCCGTTGTCACGGTGCGCGAACTCATCGCGCGGACCGGCGCTTCACCTG CTACGCTGCGGCGGGATCTGGCCAAGCTTGAAGAGGCGGGACAGATCAAG CGGGTGCACGGCGGGGTCGAGGCCCTCAATTTTGATGACCGCCCACACCT GGAAACGCGGGCTTTCGAGGCGAGCCAGTCAATGCGGGCCTCAGCCAAGC GGGCGATCAGCCGGGCGGCGGCGGGGCTTTGTCAGGATAATGACTCAATC ATCATCAATGCTGGCACAACCACCTTTCAAATGGTTGACTTCCTGCGTGA CCGCAAAATGCAAATCATCACCAATTCATTTCCGATTGCCGAAGCCCTCG TGGCGCAGAGCGAAAACCGCATCATCATGCCGGGAGGTGAAATCTACCGT GAGCAGGGCATTGTGCTGTCGCCCTTTGATGGCGATGCCTCCCAGCATTA TACGGCATCCAAAATGTTCATGAGCTGCTTTTCCTTTGGCCCGCTTGGGG TGATTGAAGGCGATGCCCTGATTGCGCGCGCTGAAGCCAAGCTTCTGGGC CGCGCCGACAAGCTCATCGTGCTTGCCGATTCTTCGAAGTTTGAAACCCG GGGCAGCATGGCGGTTTGCCCGCTGAGCCGGGTTCATACACTCATCACCG ACGACGAGGCCCCCGAAGCTGTTCTGGATCAAGTCCGGCAGGCAGGGGTG AATGTCATTGTTGTCAGTGCCGAGCGCGCCGATGTTTCTTTTGCTGCTTG A
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20093:26..826-

>mRNA_P-wetherbeei_contig20093.1.1 ID=mRNA_P-wetherbeei_contig20093.1.1|Name=mRNA_P-wetherbeei_contig20093.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=801bp|location=Sequence derived from alignment at P-wetherbeei_contig20093:26..826- (Phaeothamnion wetherbeei SAG_119_79)
ATGCACGAACGGGAACGCTGGCAGATGATACTCGGAGCGATCAAGGATCG
CGCCGTTGTCACGGTGCGCGAACTCATCGCGCGGACCGGCGCTTCACCTG
CTACGCTGCGGCGGGATCTGGCCAAGCTTGAAGAGGCGGGACAGATCAAG
CGGGTGCACGGCGGGGTCGAGGCCCTCAATTTTGATGACCGCCCACACCT
GGAAACGCGGGCTTTCGAGGCGAGCCAGTCAATGCGGGCCTCAGCCAAGC
GGGCGATCAGCCGGGCGGCGGCGGGGCTTTGTCAGGATAATGACTCAATC
ATCATCAATGCTGGCACAACCACCTTTCAAATGGTTGACTTCCTGCGTGA
CCGCAAAATGCAAATCATCACCAATTCATTTCCGATTGCCGAAGCCCTCG
TGGCGCAGAGCGAAAACCGCATCATCATGCCGGGAGGTGAAATCTACCGT
GAGCAGGGCATTGTGCTGTCGCCCTTTGATGGCGATGCCTCCCAGCATTA
TACGGCATCCAAAATGTTCATGAGCTGCTTTTCCTTTGGCCCGCTTGGGG
TGATTGAAGGCGATGCCCTGATTGCGCGCGCTGAAGCCAAGCTTCTGGGC
CGCGCCGACAAGCTCATCGTGCTTGCCGATTCTTCGAAGTTTGAAACCCG
GGGCAGCATGGCGGTTTGCCCGCTGAGCCGGGTTCATACACTCATCACCG
ACGACGAGGCCCCCGAAGCTGTTCTGGATCAAGTCCGGCAGGCAGGGGTG
AATGTCATTGTTGTCAGTGCCGAGCGCGCCGATGTTTCTTTTGCTGCTTG
A
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