mRNA_P-wetherbeei_contig2004.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2004.4.1
Unique NamemRNA_P-wetherbeei_contig2004.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig2004.4.1 vs. uniprot
Match: A0A836C9Q5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9Q5_9STRA)

HSP 1 Score: 141 bits (355), Expect = 1.730e-38
Identity = 71/130 (54.62%), Postives = 97/130 (74.62%), Query Frame = 1
Query:  244 PVSAAVGEGDLPDGARQFLNVLNAQRDWVALGKTVAERKGELSESEWKNVQLFLRKFYQACDDMAFMAKGLAAPLKKEALSLIDAMKKEVKAADKPAAARDDDGFLAAQSSVASKLDIFLQLFNDVPDEL 633
            P  AAVGEG+LPD A  FL ++  Q+DW A+GKTV ER+ +++  EW+NVQL+LRK YQ  +++  MAKG A P + +AL+L++A++ E +AADKPA ARD D FLAAQ S+ +K+  F+ LF DVPDEL
Sbjct:    7 PAFAAVGEGNLPDEAYAFLKLIQLQKDWAAIGKTVRERE-DVAGDEWQNVQLYLRKMYQQGEELKGMAKGFAEPKRAQALALVEAVRAEARAADKPAGARDRDAFLAAQRSIEAKIGEFVDLFQDVPDEL 135          
BLAST of mRNA_P-wetherbeei_contig2004.4.1 vs. uniprot
Match: D8LPW5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPW5_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 2.410e-31
Identity = 62/125 (49.60%), Postives = 87/125 (69.60%), Query Frame = 1
Query:  259 VGEGDLPDGARQFLNVLNAQRDWVALGKTVAERKGELSESEWKNVQLFLRKFYQACDDMAFMAKGLAAPLKKEALSLIDAMKKEVKAADKPAAARDDDGFLAAQSSVASKLDIFLQLFNDVPDEL 633
            VGEG LPDGARQF N++  Q+DW ALGK++  +  +++  EWKNV LFLRK YQ   ++ ++A       KK AL+L+ +++KEV+AAD PA  +D   F+ AQ+SV  K + F++LFNDVP EL
Sbjct:  121 VGEGGLPDGARQFSNLVKVQKDWAALGKSIERQGADVTADEWKNVALFLRKVYQLGGELEYLAGTFPPDKKKSALALVRSIQKEVQAADVPAREKDAAAFMKAQASVQKKFEDFMELFNDVPSEL 245          
BLAST of mRNA_P-wetherbeei_contig2004.4.1 vs. uniprot
Match: A0A7S2SX15_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SX15_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.590e-30
Identity = 75/159 (47.17%), Postives = 103/159 (64.78%), Query Frame = 1
Query:  163 EMETSRQELLQRTALFVSTVGAAAIPKPVSAA--VGEGDLPDGARQFLNVLNAQRDWVALGKTVAERKGELSESEWKNVQLFLRKFYQACDDMAFMAKGLAAPLKKEALSLIDAMKKEVKAADKPAAARDDDGFLAAQSSVASKLDIFLQLFNDVPDEL 633
            E   SR+ LLQ  A + S   A A P  VSAA  VGEG LP+GARQF NVL  + +W  +GKTV + + ELS ++W+N+Q FLR+ YQ  +DM F+AKG++   +  A   ++A++K ++ ADKPA   D   FL AQ  VA ++  FL+L +DVPDEL
Sbjct:   19 EPSLSRRSLLQLPA-WASAGLALAGPARVSAAAPVGEGGLPEGARQFDNVLRMRVEWDVMGKTVQDSE-ELSAAQWRNIQGFLRRAYQVGNDMKFVAKGVSKDKQAAAFKAVEAIQKSIEGADKPAQQNDRAAFLVAQKDVARQIADFLELISDVPDEL 175          
BLAST of mRNA_P-wetherbeei_contig2004.4.1 vs. uniprot
Match: A0A7S2H2F6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H2F6_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.300e-29
Identity = 65/141 (46.10%), Postives = 90/141 (63.83%), Query Frame = 1
Query:  217 TVGAAAIPKPVSAAVGEGDLPDGARQFLNVLNAQRDWVALGKTVAERKGELSESEWKNVQLFLRKFYQACDDMAFMAKGLAAPLKKEALSLIDAMKKEVKAADKPAAARDDDGFLAAQSSVASKLDIFLQLFND--VPDEL 633
            TV  +A+ KPV    GEG LPDGARQF N++ AQRDW+ LGK V  R  E ++ EWKNV  +LRK Y   DDM F+++ + A  K +A +L+ + K++VK A KP   +D + F+A +   +S+L  FL L +   VPDEL
Sbjct:   79 TVATSAMAKPV----GEGGLPDGARQFDNLVRAQRDWIKLGKAVESRHEEFTDEEWKNVGFYLRKLYSVGDDMTFLSQNMEAAKKTDAAALVKSFKQKVKDAAKPVETKDWEAFVAVEKETSSQLSTFLGLLSSGSVPDEL 215          
BLAST of mRNA_P-wetherbeei_contig2004.4.1 vs. uniprot
Match: A0A7S1XVU1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVU1_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.580e-29
Identity = 63/135 (46.67%), Postives = 82/135 (60.74%), Query Frame = 1
Query:  229 AAIPKPVSAAVGEGDLPDGARQFLNVLNAQRDWVALGKTVAERKGELSESEWKNVQLFLRKFYQACDDMAFMAKGLAAPLKKEALSLIDAMKKEVKAADKPAAARDDDGFLAAQSSVASKLDIFLQLFNDVPDEL 633
            AA P P  AAVGEGDLP+GARQF NVL AQ+ W  LGK V +R  +  + EW NVQ  LR  YQ  DDM  +AKG     +K+  +L+  M+ +++ AD+PA  +D   FL A + +      F  L +DVPDEL
Sbjct:    4 AAAPAPTLAAVGEGDLPEGARQFQNVLKAQKTWAELGKAVKDRGSQFDDKEWVNVQTLLRSVYQVGDDMKAVAKGNGN--EKQLFALVKEMQGKIQGADEPAKQKDAAAFLVAVTDIGKSFTSFFDLLSDVPDEL 136          
BLAST of mRNA_P-wetherbeei_contig2004.4.1 vs. uniprot
Match: A0A7S2H2F4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H2F4_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.600e-18
Identity = 44/85 (51.76%), Postives = 56/85 (65.88%), Query Frame = 1
Query:  217 TVGAAAIPKPVSAAVGEGDLPDGARQFLNVLNAQRDWVALGKTVAERKGELSESEWKNVQLFLRKFYQACDDMAFMAKGLAAPLK 471
            TV  +A+ KPV    GEG LPDGARQF N++ AQRDW+ LGK V  R  E ++ EWKNV  +LRK Y   DDM F+++ + A  K
Sbjct:   79 TVATSAMAKPV----GEGGLPDGARQFDNLVRAQRDWIKLGKAVESRHEEFTDEEWKNVGFYLRKLYSVGDDMTFLSQNMEAAKK 159          
BLAST of mRNA_P-wetherbeei_contig2004.4.1 vs. uniprot
Match: L1ISU0_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1ISU0_GUITC)

HSP 1 Score: 85.9 bits (211), Expect = 2.080e-16
Identity = 51/154 (33.12%), Postives = 81/154 (52.60%), Query Frame = 1
Query:  205 LFVSTVGAAAIPKPVSAA-VGEGDLPDGARQFLNVLNAQRDWVALGKTVAERKGELSESEWKNVQLFLRKFYQACDDMAFMAKGLAAPLKKEALSLIDAMKKEVKAADKPAAARDDDGFLAAQSSVASKLDIFLQLFND----------VPDEL 633
            + ++T G  A  K V A  V +G LP G  ++++++ +++ W  +G  V+    E+SE EWKNVQ +LRKF+    DM  +AK  +   +K    +    +K VK  DKPAAA+D + F+A    +   +D F  + +           VPDEL
Sbjct:   61 IMLATAGMLAQTKDVGAKDVADGGLPGGLAEYMSIIKSKKQWGEIGNRVSNGHAEMSEEEWKNVQGYLRKFFDTGKDMEVVAKAFSPEEQKAVAEVSKEFRKAVKGIDKPAAAKDWETFMAQHKVILGYIDEFQDIRSGKKKIQSNAQYVPDEL 214          
BLAST of mRNA_P-wetherbeei_contig2004.4.1 vs. uniprot
Match: A0A7S3NJV4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJV4_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 3.250e-16
Identity = 50/149 (33.56%), Postives = 77/149 (51.68%), Query Frame = 1
Query:  187 LLQRTALFVSTVGAAAIPKPVSAAVGEGDLPDGARQFLNVLNAQRDWVALGKTVAERKGELSESEWKNVQLFLRKFYQACDDMAFMAKGLAAPLKKEALSLIDAMKKEVKAADKPAAARDDDGFLAAQSSVASKLDIFLQLFNDVPDEL 633
            ++ R+ +  +++GA   P  +S A  EGDLPDGA QF   +  Q +W   G  + +    +   EW+ V LFLRK Y   +DM F+ + L    +  A  +    +  VK ADKP   +D    + A +  ++ +  FL+L  DVPDEL
Sbjct:   27 VVTRSQVLRASLGATLTPL-ISNARNEGDLPDGAFQFDRFIKVQSEWNRFGSRLKDESQVIDAKEWEAVGLFLRKLYDEGEDMIFITQNLDKTKQNAAKEIATRFRSSVKGADKPVREQDRPVVIYAYNETSALMRSFLELLQDVPDEL 174          
BLAST of mRNA_P-wetherbeei_contig2004.4.1 vs. uniprot
Match: A0A7S2CQC3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CQC3_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 3.640e-15
Identity = 41/76 (53.95%), Postives = 52/76 (68.42%), Query Frame = 1
Query:  226 AAAIPKPVSAAVGEGDLPDGARQFLNVLNAQRDWVALGKTVAERKGELSESEWKNVQLFLRKFYQACDDMAFMAKG 453
            AAA+P      VGEG LPDGA+QF +++ A+R+W  LGK++A R  E S  EWKNV LFLR+ Y   DDM FMA+ 
Sbjct:  106 AAALP------VGEGGLPDGAKQFESLVRAKREWNKLGKSIATRHEEYSAEEWKNVALFLRQLYSTGDDMNFMARS 175          
BLAST of mRNA_P-wetherbeei_contig2004.4.1 vs. uniprot
Match: A0A813F4Q6_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813F4Q6_POLGL)

HSP 1 Score: 81.6 bits (200), Expect = 1.090e-14
Identity = 56/177 (31.64%), Postives = 87/177 (49.15%), Query Frame = 1
Query:  172 TSRQELLQRTALFVSTVGAAAIPKPVSAAVGEGDLPDGARQFLNVLNAQRDWV--------ALGKTVAERKGE-------LSESEWKNVQLFLRKFYQACDDMAFMAKGLAAPLKKE-ALSLIDAMKKEVKAADKPAAARDDDGFLAAQSSVASKLDIFLQLFNDVPDEL*TGVVSD 654
            TSR+++L      +   G  A P+  SA VGEGDLP GA+Q   +      W         A+    A ++G+        +  EW+N   FLR+ Y   DDM ++++G     KKE A +LI+  KK+VK  DKP  A+D + FL   + +   ++ F  L  D  ++L +   +D
Sbjct:   56 TSRRDVLAAVLPLLGVGGLGAAPQSASAQVGEGDLPQGAKQEDRIRKGLEAWKKLPAKISDAVAAEAAAKEGDNATAATAAAAKEWENAVGFLRRLYGLNDDMTYLSRGFKPAEKKEKAETLINKFKKQVKLTDKPVKAKDYEKFLTFHTEITGYIEEFNSLLLDAEEDLSSAEATD 232          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2004.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A836C9Q5_9STRA1.730e-3854.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LPW5_ECTSI2.410e-3149.60Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2SX15_9STRA1.590e-3047.17Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2H2F6_9STRA1.300e-2946.10Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1XVU1_9STRA1.580e-2946.67Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2H2F4_9STRA1.600e-1851.76Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
L1ISU0_GUITC2.080e-1633.12Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
A0A7S3NJV4_9STRA3.250e-1633.56Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2CQC3_9STRA3.640e-1553.95Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A813F4Q6_POLGL1.090e-1431.64Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2004contigP-wetherbeei_contig2004:3912..5114 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LPW5
Model size863
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons2
Evalue2.47e-33
EggNOG OGs2E2BQ@1|root,2S9JQ@2759|Eukaryota
Ec32 ortholog descriptionPsbQ-like domain
Ec32 orthologEc-15_001890.1
Cds size609
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186189.1246402-UTR-P-wetherbeei_contig2004:3911..41381683186189.1246402-UTR-P-wetherbeei_contig2004:3911..4138Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2004 3912..4138 -
1683186189.1562657-UTR-P-wetherbeei_contig2004:5087..51141683186189.1562657-UTR-P-wetherbeei_contig2004:5087..5114Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2004 5088..5114 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186189.1328733-CDS-P-wetherbeei_contig2004:4138..43541683186189.1328733-CDS-P-wetherbeei_contig2004:4138..4354Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2004 4139..4354 -
1683186189.141403-CDS-P-wetherbeei_contig2004:4694..50871683186189.141403-CDS-P-wetherbeei_contig2004:4694..5087Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2004 4695..5087 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2004.4.1prot_P-wetherbeei_contig2004.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2004 4139..5087 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2004.4.1

>prot_P-wetherbeei_contig2004.4.1 ID=prot_P-wetherbeei_contig2004.4.1|Name=mRNA_P-wetherbeei_contig2004.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=203bp
MTLFSLALVALAVLHETDAFATIHPRPAAKAGQRSVFRTVSVMSTEMETS
RQELLQRTALFVSTVGAAAIPKPVSAAVGEGDLPDGARQFLNVLNAQRDW
VALGKTVAERKGELSESEWKNVQLFLRKFYQACDDMAFMAKGLAAPLKKE
ALSLIDAMKKEVKAADKPAAARDDDGFLAAQSSVASKLDIFLQLFNDVPD
EL*
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mRNA from alignment at P-wetherbeei_contig2004:3912..5114-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2004.4.1 ID=mRNA_P-wetherbeei_contig2004.4.1|Name=mRNA_P-wetherbeei_contig2004.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1203bp|location=Sequence derived from alignment at P-wetherbeei_contig2004:3912..5114- (Phaeothamnion wetherbeei SAG_119_79)
AACGGTTCCGCTCCCCACGAGCAAATCATGACTCTCTTCTCCCTCGCGCT CGTAGCTCTTGCTGTTCTGCATGAAACGGATGCCTTCGCGACGATACATC CCCGTCCTGCCGCAAAGGCTGGCCAACGCAGTGTATTTCGAACGGTCTCG GTGATGAGCACCGAGATGGAGACCTCGAGGCAGGAACTGCTACAGAGAAC AGCGCTCTTCGTTTCCACGGTCGGTGCCGCGGCGATTCCCAAGCCGGTGT CAGCCGCCGTGGGCGAGGGAGACCTGCCTGACGGAGCGAGACAGTTCCTC AACGTGCTGAACGCGCAAAGGGATTGGGTTGCGCTGGGCAAGACAGTCGC AGAACGAAAGGGGGAGCTTTCCGAGTCTGAGTGGAAGAATGTTCAGCTCT TTTTGCGAAAGTTTTATCAGGTGAGGCTTGCCTTGTGGTATCAAAGCCAT GGCTGCTGACGAGAGAACGTCCTGGCCACAAATCGTCGTCTTTAAAGTCT TTCCGAAGAAAGAGGTCTTGGCCGGTGCGGTTTTAACTATGGTCTTTCCG ACAATCCTGACAAGACCGATTTGTCAAGGCCAACACAATTGAATTCTGTG ATTAGTTACTTGAACTTCGCGCTTGCCGAAAGGTTGCAGAAATATTGACG GACGCCGTCCTTTACCCTCCTCCCGGCATCCCCCCTTTTGTTGCTCTCAT AACGCAATTGCTTCGATTGCTCCCTGCCTTCTTTTCTCCTCCCGCCCCCG GTCCCGCCAGGCGTGTGACGATATGGCCTTCATGGCAAAGGGCCTCGCCG CCCCGCTTAAGAAGGAAGCGCTGTCGCTGATCGACGCCATGAAGAAGGAG GTCAAGGCCGCCGACAAGCCCGCCGCCGCCCGCGACGACGACGGCTTTTT GGCGGCGCAGTCCTCCGTCGCCAGCAAGCTCGACATCTTTTTGCAGCTCT TCAACGACGTCCCGGACGAACTTTAGACCGGCGTCGTTTCGGACGAGGTC CTTGAGTTGGCTGGGGCGACGGCTGGTATTAGGAGAATGTCGGGGATAGT AGAGGCAACTATATGTGTCGGTGCGAGAGTGGAGGAGGCGTGCTTTCTAA GCCCTGCATCAAGCGTCGAGCCGCCTGAACGAGTAAACCGATCAAAAGGG GCGTCCAGACACGAGGGACTTTACAGCAGAAGATTGCAACAGATCGACAC GGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2004:3912..5114-

>mRNA_P-wetherbeei_contig2004.4.1 ID=mRNA_P-wetherbeei_contig2004.4.1|Name=mRNA_P-wetherbeei_contig2004.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=609bp|location=Sequence derived from alignment at P-wetherbeei_contig2004:3912..5114- (Phaeothamnion wetherbeei SAG_119_79)
ATGACTCTCTTCTCCCTCGCGCTCGTAGCTCTTGCTGTTCTGCATGAAAC
GGATGCCTTCGCGACGATACATCCCCGTCCTGCCGCAAAGGCTGGCCAAC
GCAGTGTATTTCGAACGGTCTCGGTGATGAGCACCGAGATGGAGACCTCG
AGGCAGGAACTGCTACAGAGAACAGCGCTCTTCGTTTCCACGGTCGGTGC
CGCGGCGATTCCCAAGCCGGTGTCAGCCGCCGTGGGCGAGGGAGACCTGC
CTGACGGAGCGAGACAGTTCCTCAACGTGCTGAACGCGCAAAGGGATTGG
GTTGCGCTGGGCAAGACAGTCGCAGAACGAAAGGGGGAGCTTTCCGAGTC
TGAGTGGAAGAATGTTCAGCTCTTTTTGCGAAAGTTTTATCAGGCGTGTG
ACGATATGGCCTTCATGGCAAAGGGCCTCGCCGCCCCGCTTAAGAAGGAA
GCGCTGTCGCTGATCGACGCCATGAAGAAGGAGGTCAAGGCCGCCGACAA
GCCCGCCGCCGCCCGCGACGACGACGGCTTTTTGGCGGCGCAGTCCTCCG
TCGCCAGCAAGCTCGACATCTTTTTGCAGCTCTTCAACGACGTCCCGGAC
GAACTTTAG
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