mRNA_P-wetherbeei_contig19980.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig19980.1.1 vs. uniprot
Match: A0A1N6YCD6_9RHOO (Predicted arabinose efflux permease, MFS family n=8 Tax=Rhodocyclales TaxID=206389 RepID=A0A1N6YCD6_9RHOO) HSP 1 Score: 300 bits (769), Expect = 4.130e-97 Identity = 149/253 (58.89%), Postives = 189/253 (74.70%), Query Frame = 1
Query: 7 ASREKQVAAAVLGNALEWYDFVVFGMLSVIIADLFFPGDDPYIRLLKTTATFGVGFVMRPIGGVVMGIYADKMGRKAAMQIIIALMTVSLLSIALAPTYSTIGYAAPAIIVFARLLQGFATGGQYAIATSFLVEVAPPGRRGLYGSMTQIGQALAALGGACAGMFLSVMLTPEQTAAWGWRLPFAIGLLIAPVGVYIARHLEESDAFLDHQKTAGKRLPLLTMLHENLRGVMVTFGLVICGTITYYVVLIYMP 765
A R +Q+ AAV+GNALEWYDF+VFG L+V+I+ LFFP D Y LL TATFGVGF MRP+GGV++GIYAD+ GRKAA+Q+IIA+MTVS+ IA AP Y+ IG AAP +IV ARLLQGFATGG++A ATSFL+E APP +RGLYGS GQ LA GA ++ L+PE AWGWR+PF IGLLI PVG++I RHLEE++AFL+ K ++ + ML +LR V G+ +CGT+ +YV+L+YMP
Sbjct: 7 APRARQIVAAVIGNALEWYDFIVFGFLAVVISRLFFPADSEYSSLLMATATFGVGFFMRPVGGVLLGIYADRKGRKAALQLIIAMMTVSIALIAFAPPYAAIGLAAPLLIVLARLLQGFATGGEFASATSFLIESAPPNKRGLYGSWQMFGQGLAVFAGAGVTALITRNLSPEALDAWGWRIPFMIGLLIGPVGLWIRRHLEETEAFLEAHKAPAEKQSIARMLRNHLREVFAVMGVTVCGTVGFYVILVYMP 259
BLAST of mRNA_P-wetherbeei_contig19980.1.1 vs. uniprot
Match: H0Q4I4_9RHOO (Major facilitator superfamily MFS_1 n=1 Tax=Azoarcus sp. KH32C TaxID=748247 RepID=H0Q4I4_9RHOO) HSP 1 Score: 295 bits (755), Expect = 5.180e-95 Identity = 147/253 (58.10%), Postives = 188/253 (74.31%), Query Frame = 1
Query: 7 ASREKQVAAAVLGNALEWYDFVVFGMLSVIIADLFFPGDDPYIRLLKTTATFGVGFVMRPIGGVVMGIYADKMGRKAAMQIIIALMTVSLLSIALAPTYSTIGYAAPAIIVFARLLQGFATGGQYAIATSFLVEVAPPGRRGLYGSMTQIGQALAALGGACAGMFLSVMLTPEQTAAWGWRLPFAIGLLIAPVGVYIARHLEESDAFLDHQKTAGKRLPLLTMLHENLRGVMVTFGLVICGTITYYVVLIYMP 765
A R Q+ AAV+GNALEWYDF+VFG L+V+I+ LFFP D Y LL TATFGVGF MRP+GG+++GIYAD+ GRKAA+Q+II +MTV++ IA AP Y+ IG AAP +IV ARLLQGFATGG++A ATSFL+E APP RRGLYGS GQ LA GA ++ L+PE AWGWR+PF IGLLI PVG++I RHLEE++AFL+ ++ ++ L ML +LR V G+ +CGT+ +YV+L+YMP
Sbjct: 7 APRTMQIVAAVIGNALEWYDFIVFGFLAVVISRLFFPADSEYSSLLMATATFGVGFFMRPVGGILLGIYADRKGRKAALQLIIGMMTVAIALIAFAPPYAAIGVAAPLLIVLARLLQGFATGGEFASATSFLIESAPPNRRGLYGSWQMFGQGLAVFCGASVTALVTRNLSPEALDAWGWRIPFMIGLLIGPVGLWIRRHLEETEAFLEARQAPAEKQSLGRMLRNHLREVFAVMGVTVCGTVGFYVILVYMP 259
BLAST of mRNA_P-wetherbeei_contig19980.1.1 vs. uniprot
Match: A0A010RPI2_PSEFL (Membrane protein n=1 Tax=Pseudomonas fluorescens HK44 TaxID=1042209 RepID=A0A010RPI2_PSEFL) HSP 1 Score: 295 bits (754), Expect = 7.540e-95 Identity = 145/253 (57.31%), Postives = 192/253 (75.89%), Query Frame = 1
Query: 7 ASREKQVAAAVLGNALEWYDFVVFGMLSVIIADLFFPGDDPYIRLLKTTATFGVGFVMRPIGGVVMGIYADKMGRKAAMQIIIALMTVSLLSIALAPTYSTIGYAAPAIIVFARLLQGFATGGQYAIATSFLVEVAPPGRRGLYGSMTQIGQALAALGGACAGMFLSVMLTPEQTAAWGWRLPFAIGLLIAPVGVYIARHLEESDAFLDHQKTAGKRLPLLTMLHENLRGVMVTFGLVICGTITYYVVLIYMP 765
A ++Q+ AAV+GNALEWYDF+VFG L+V+I+ LFFP + Y LL TTATFGVGF MRP+GGV++GIYAD+ GRKAA+Q+II +MTV++ IA AP Y+ IG AAP +IVFARLLQGFATGG++A ATSFL+E APP RRGLYGS GQ LA GA ++ L+PE AWGWR+PF IGL+I PVG++I RHL E++AFL+ ++ ++ L+ ML ++R V+ L +CGT+++YV+L+YMP
Sbjct: 7 APPKRQIVAAVIGNALEWYDFIVFGFLAVVISRLFFPAESEYSSLLMTTATFGVGFFMRPVGGVLLGIYADRRGRKAALQLIIGMMTVAIALIAFAPPYAAIGVAAPLLIVFARLLQGFATGGEFASATSFLIESAPPNRRGLYGSWQMFGQGLAVFCGAAITALVTRGLSPEALDAWGWRIPFIIGLIIGPVGLWIRRHLSETNAFLEARQAPKEKQSLVRMLRNHMREVITVMALTVCGTVSFYVILVYMP 259
BLAST of mRNA_P-wetherbeei_contig19980.1.1 vs. uniprot
Match: A0A1N6I8L1_9BURK (Predicted arabinose efflux permease, MFS family n=3 Tax=Burkholderiaceae TaxID=119060 RepID=A0A1N6I8L1_9BURK) HSP 1 Score: 294 bits (752), Expect = 1.030e-94 Identity = 146/249 (58.63%), Postives = 191/249 (76.71%), Query Frame = 1
Query: 19 KQVAAAVLGNALEWYDFVVFGMLSVIIADLFFPGDDPYIRLLKTTATFGVGFVMRPIGGVVMGIYADKMGRKAAMQIIIALMTVSLLSIALAPTYSTIGYAAPAIIVFARLLQGFATGGQYAIATSFLVEVAPPGRRGLYGSMTQIGQALAALGGACAGMFLSVMLTPEQTAAWGWRLPFAIGLLIAPVGVYIARHLEESDAFLDHQKTAGKRLPLLTMLHENLRGVMVTFGLVICGTITYYVVLIYMP 765
+QV AA++GNALEWYDF+V+G L+++I+ LFFP D Y LL TTATFGVGF MRP+GG+++G+YAD+ GRKAA+Q+II LMTVS+ IA PTY+ IG AP IIV AR+LQGFATGG++A +T+FLVE AP RRGLYGS GQALA LGGA G ++ L+PE AWGWR+PF GL+I PVG++I RHLEE++AF++ QK + L ++ E+ RGV+V+ L IC T+++YVVL+YMP
Sbjct: 15 RQVIAAIIGNALEWYDFIVYGFLTIVISKLFFPTDSEYGSLLLTTATFGVGFFMRPVGGILIGMYADRKGRKAALQLIIGLMTVSIAMIAFTPTYAAIGIGAPLIIVLARMLQGFATGGEFASSTAFLVESAPADRRGLYGSWQMFGQALAVLGGALVGALVTKGLSPEAVEAWGWRIPFLGGLVIGPVGLWIRRHLEETEAFIEAQKDTKSQQTLGSVFREHRRGVLVSMCLTICATVSFYVVLVYMP 263
BLAST of mRNA_P-wetherbeei_contig19980.1.1 vs. uniprot
Match: UPI00141270CA (citrate-proton symporter n=1 Tax=Pseudomonas sp. R5(2019) TaxID=2697566 RepID=UPI00141270CA) HSP 1 Score: 292 bits (747), Expect = 5.670e-94 Identity = 150/253 (59.29%), Postives = 191/253 (75.49%), Query Frame = 1
Query: 10 SREKQVAAAVLGNALEWYDFVVFGMLSVIIADLFFPGDDPYIRLLKTTATFGVGFVMRPIGGVVMGIYADKMGRKAAMQIIIALMTVSLLSIALAPTYSTIGYAAPAIIVFARLLQGFATGGQYAIATSFLVEVAPPGRRGLYGSMTQIGQALAALGGACAGMFLSVMLTPEQTAAWGWRLPFAIGLLIAPVGVYIARHLEESDAFLDHQKTA-GKRLPLLTMLHENLRGVMVTFGLVICGTITYYVVLIYMP 765
SR +QV AAV+GNALEWYDF+V+G LS IIA LFFP D+ Y LL ATFGVGF MRP+GGV++G+YAD+ GRKAAMQ+II LMT+++ IA AP Y+ IG AP +IV AR+LQGFATGG+YA AT+FLVE AP RRGLYG+ GQ LA GA G ++ +L+PE +WGWRLPF +GLLIAPVG+++ RH+EE+D F+D +K + K + LL +L E RGV+VT G I GT+T+YV+L+ MP
Sbjct: 9 SRTRQVTAAVIGNALEWYDFIVYGFLSSIIARLFFPSDNEYTSLLMALATFGVGFFMRPVGGVLLGLYADRKGRKAAMQLIILLMTLAIAMIAFAPDYAAIGIGAPVLIVVARMLQGFATGGEYASATAFLVESAPANRRGLYGAWQLFGQCLAVFAGAGMGALVTHLLSPEALDSWGWRLPFVVGLLIAPVGLWMRRHMEETDDFIDARKASTDKPMGLLDVLREYRRGVLVTMGSTISGTVTFYVMLVNMP 261
BLAST of mRNA_P-wetherbeei_contig19980.1.1 vs. uniprot
Match: UPI001FF3A7C6 (citrate-proton symporter n=1 Tax=Aromatoleum anaerobium TaxID=182180 RepID=UPI001FF3A7C6) HSP 1 Score: 292 bits (747), Expect = 8.810e-94 Identity = 146/253 (57.71%), Postives = 187/253 (73.91%), Query Frame = 1
Query: 7 ASREKQVAAAVLGNALEWYDFVVFGMLSVIIADLFFPGDDPYIRLLKTTATFGVGFVMRPIGGVVMGIYADKMGRKAAMQIIIALMTVSLLSIALAPTYSTIGYAAPAIIVFARLLQGFATGGQYAIATSFLVEVAPPGRRGLYGSMTQIGQALAALGGACAGMFLSVMLTPEQTAAWGWRLPFAIGLLIAPVGVYIARHLEESDAFLDHQKTAGKRLPLLTMLHENLRGVMVTFGLVICGTITYYVVLIYMP 765
A R QV AAV+GNALEWYDF+VFG L+V+I+ LFFP D Y LL TTATFGVGF MRP+GG+++GIYAD+ GRKAA+Q+II +MTV++ IA AP Y+ IG AAP ++V ARLLQGFATGG++A AT+FL+E APP RRGLYGS GQ LA GA ++ L+PE AWGWR+PF IGLLI PVG++I RHL E++AFL+ + ++ L ML +LR V G+ +CGT+ +YV+L+YMP
Sbjct: 9 APRTSQVIAAVIGNALEWYDFIVFGFLAVVISRLFFPSDSEYSSLLMTTATFGVGFFMRPVGGILLGIYADRKGRKAALQLIIGMMTVAIALIAFAPPYAAIGIAAPLVLVLARLLQGFATGGEFASATAFLIESAPPNRRGLYGSWQMFGQGLAVFCGAGVTALVTRGLSPEALDAWGWRIPFLIGLLIGPVGLWIRRHLSETEAFLEAHQAPKEKQSLARMLRNHLREVFAVMGVSVCGTVGFYVILVYMP 261
BLAST of mRNA_P-wetherbeei_contig19980.1.1 vs. uniprot
Match: A0A3N8KFN5_9BURK (MFS transporter n=2 Tax=unclassified Burkholderia TaxID=2613784 RepID=A0A3N8KFN5_9BURK) HSP 1 Score: 288 bits (738), Expect = 1.250e-92 Identity = 149/253 (58.89%), Postives = 192/253 (75.89%), Query Frame = 1
Query: 10 SREKQVAAAVLGNALEWYDFVVFGMLSVIIADLFFPGDDPYIRLLKTTATFGVGFVMRPIGGVVMGIYADKMGRKAAMQIIIALMTVSLLSIALAPTYSTIGYAAPAIIVFARLLQGFATGGQYAIATSFLVEVAPPGRRGLYGSMTQIGQALAALGGACAGMFLSVMLTPEQTAAWGWRLPFAIGLLIAPVGVYIARHLEESDAFLDHQKTAGK-RLPLLTMLHENLRGVMVTFGLVICGTITYYVVLIYMP 765
+R +QVAAAV+GN LEWYDF+V+G S IIA LFFP + Y LL + ATFGVGF MRP+GGV++G+YAD+ GRKAAMQ+II LMT+S+ IA APTY+TIG AAP +IV AR+LQGFATGG+YA +T+FLVE AP RRGLYGS IGQ L+ GA G + + L+P +WGWR+PFAIGLLI PVG++I RH+EE+DAFLD K AG+ + + +L +NLRGV+V+ G + GT +YV+L+ +P
Sbjct: 9 TRHRQVAAAVVGNTLEWYDFIVYGFFSGIIARLFFPAESQYASLLMSLATFGVGFFMRPVGGVLLGLYADRKGRKAAMQLIIFLMTLSIALIAFAPTYATIGPAAPVLIVAARMLQGFATGGEYASSTAFLVESAPAHRRGLYGSWQLIGQCLSVFAGAAMGAWATRNLSPGALDSWGWRVPFAIGLLIGPVGLWIRRHMEETDAFLDASKAAGQPAISVSGVLRDNLRGVLVSIGQTVTGTAVFYVMLVNLP 261
BLAST of mRNA_P-wetherbeei_contig19980.1.1 vs. uniprot
Match: A0A2R3ILF7_PSEAI (MFS transporter n=166 Tax=Bacteria TaxID=2 RepID=A0A2R3ILF7_PSEAI) HSP 1 Score: 288 bits (737), Expect = 1.720e-92 Identity = 148/252 (58.73%), Postives = 190/252 (75.40%), Query Frame = 1
Query: 10 SREKQVAAAVLGNALEWYDFVVFGMLSVIIADLFFPGDDPYIRLLKTTATFGVGFVMRPIGGVVMGIYADKMGRKAAMQIIIALMTVSLLSIALAPTYSTIGYAAPAIIVFARLLQGFATGGQYAIATSFLVEVAPPGRRGLYGSMTQIGQALAALGGACAGMFLSVMLTPEQTAAWGWRLPFAIGLLIAPVGVYIARHLEESDAFLDHQKTAGKRLPLLTMLHENLRGVMVTFGLVICGTITYYVVLIYMP 765
SR +QVAAAV+GNALEWYDF+V+G LS +IA LFFP D Y LL ATFGVGF MRP GGV++G+YAD+ GRKAAMQ+II LMT+S+ IALAPT++ IG AP +IV AR+LQGFATGG++A AT+FLVE APP RRGLYGS GQ LA GA G ++ L+ +WGWRLPF +GLLI PVG +I R++ E++AFL+ ++ G+RL LL +L + RGV+V+ GL + GT+++YVVL+ MP
Sbjct: 9 SRTRQVAAAVIGNALEWYDFIVYGFLSSLIARLFFPSGDDYTSLLMALATFGVGFFMRPAGGVLLGLYADRKGRKAAMQLIILLMTLSIALIALAPTHAAIGLGAPLLIVIARMLQGFATGGEFASATAFLVESAPPHRRGLYGSWQLFGQCLAVFTGAGMGALVTHCLSAAALESWGWRLPFLVGLLIGPVGFWIRRYMSETEAFLEARQAPGERLGLLGVLRRHRRGVLVSMGLTVIGTVSFYVVLVNMP 260
BLAST of mRNA_P-wetherbeei_contig19980.1.1 vs. uniprot
Match: A0A7D5I5Y1_9PSED (MFS transporter n=4 Tax=Pseudomonas TaxID=286 RepID=A0A7D5I5Y1_9PSED) HSP 1 Score: 288 bits (738), Expect = 1.940e-92 Identity = 145/253 (57.31%), Postives = 186/253 (73.52%), Query Frame = 1
Query: 7 ASREKQVAAAVLGNALEWYDFVVFGMLSVIIADLFFPGDDPYIRLLKTTATFGVGFVMRPIGGVVMGIYADKMGRKAAMQIIIALMTVSLLSIALAPTYSTIGYAAPAIIVFARLLQGFATGGQYAIATSFLVEVAPPGRRGLYGSMTQIGQALAALGGACAGMFLSVMLTPEQTAAWGWRLPFAIGLLIAPVGVYIARHLEESDAFLDHQKTAGKRLPLLTMLHENLRGVMVTFGLVICGTITYYVVLIYMP 765
A + QV AAV+GNALEWYDF+VFG L+V+I+ LFFP + Y LL TATFGVGF MRP+GG+++GIYAD+ GRKAA+Q+II +MTVS+ IA AP Y+ IG AAP +IV ARLLQGFATGG++A ATSFL+E AP RRGLYGS GQ LA GA ++ LTPE AWGWR+PF IGL+I PVG+++ RHL E+ AFL+ ++ ++ L ML +LR V+ GL +CGT+ +YV+L+YMP
Sbjct: 7 APPKHQVIAAVIGNALEWYDFIVFGFLAVVISRLFFPSESEYSSLLMATATFGVGFFMRPVGGILLGIYADRRGRKAALQLIIGMMTVSIAMIAFAPPYAAIGVAAPMLIVLARLLQGFATGGEFASATSFLIESAPANRRGLYGSWQMFGQGLAVFCGAAITALVTNGLTPEALDAWGWRIPFIIGLIIGPVGLWMRRHLSETSAFLEARQAPKEKQSLARMLRNHLREVITVMGLTVCGTVGFYVILVYMP 259
BLAST of mRNA_P-wetherbeei_contig19980.1.1 vs. uniprot
Match: A0A2D5VSG4_PSESP (MFS transporter n=1 Tax=Pseudomonas sp. TaxID=306 RepID=A0A2D5VSG4_PSESP) HSP 1 Score: 288 bits (737), Expect = 2.670e-92 Identity = 144/253 (56.92%), Postives = 187/253 (73.91%), Query Frame = 1
Query: 7 ASREKQVAAAVLGNALEWYDFVVFGMLSVIIADLFFPGDDPYIRLLKTTATFGVGFVMRPIGGVVMGIYADKMGRKAAMQIIIALMTVSLLSIALAPTYSTIGYAAPAIIVFARLLQGFATGGQYAIATSFLVEVAPPGRRGLYGSMTQIGQALAALGGACAGMFLSVMLTPEQTAAWGWRLPFAIGLLIAPVGVYIARHLEESDAFLDHQKTAGKRLPLLTMLHENLRGVMVTFGLVICGTITYYVVLIYMP 765
A QV AAV+GNALEWYDF++FG L+V+I+ LFFP + Y LL TATFGVGF MRP+GG+++GIYAD+ GRKAA+Q+IIA+MTVS+ IA AP ++ IG AAP +IVFARLLQGFATGG++A ATSFL+E AP RRGLYGS GQ LA GA ++ L+PE +WGWR+PF IGL+I PVG++I RHL E++AFL+ ++ ++ L ML +LRGV L +CGT+ +YV+L+YMP
Sbjct: 7 APPRNQVVAAVIGNALEWYDFIIFGFLAVVISRLFFPAESEYSSLLMATATFGVGFFMRPVGGILLGIYADRRGRKAALQLIIAMMTVSIALIAFAPPFAAIGIAAPLLIVFARLLQGFATGGEFASATSFLIESAPSNRRGLYGSWQMFGQGLAVFCGAGITALVTNGLSPEALDSWGWRIPFIIGLVIGPVGLWIRRHLSETEAFLEARQAPKEKQSLARMLRNHLRGVATVMALTVCGTVGFYVILVYMP 259 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19980.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig19980.1.1 >prot_P-wetherbeei_contig19980.1.1 ID=prot_P-wetherbeei_contig19980.1.1|Name=mRNA_P-wetherbeei_contig19980.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=255bp MPASREKQVAAAVLGNALEWYDFVVFGMLSVIIADLFFPGDDPYIRLLKTback to top mRNA from alignment at P-wetherbeei_contig19980:486..1250+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig19980.1.1 ID=mRNA_P-wetherbeei_contig19980.1.1|Name=mRNA_P-wetherbeei_contig19980.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=765bp|location=Sequence derived from alignment at P-wetherbeei_contig19980:486..1250+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig19980:486..1250+ >mRNA_P-wetherbeei_contig19980.1.1 ID=mRNA_P-wetherbeei_contig19980.1.1|Name=mRNA_P-wetherbeei_contig19980.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=765bp|location=Sequence derived from alignment at P-wetherbeei_contig19980:486..1250+ (Phaeothamnion wetherbeei SAG_119_79)back to top |