mRNA_P-wetherbeei_contig199.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig199.5.1
Unique NamemRNA_P-wetherbeei_contig199.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig199.5.1 vs. uniprot
Match: D8LLE4_ECTSI (PRLI-interacting factor L-like (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLE4_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 4.960e-25
Identity = 43/83 (51.81%), Postives = 61/83 (73.49%), Query Frame = 1
Query:    1 FNDFMADLMGSVAPDLYRYKGVLSFDGQLPKFVFQGIHDQVDCQPSSHDWAEGEERVNRLVFIGHDLDQKSIEAGLRECMVAE 249
            FN FMA+ +   + +L+R KGVL+F  Q  KFVFQG+H+Q+DC+P+ + WAEGEERV+++VFIG DLD+  I    + C+V E
Sbjct:    2 FNKFMAEFLRENSANLFRSKGVLAFKDQERKFVFQGVHEQIDCEPAINGWAEGEERVSKIVFIGLDLDKDYITESFKACIVPE 84          
BLAST of mRNA_P-wetherbeei_contig199.5.1 vs. uniprot
Match: A0A7S2K368_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K368_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 5.640e-25
Identity = 48/85 (56.47%), Postives = 59/85 (69.41%), Query Frame = 1
Query:    1 FNDFMADLMGSVAPDLYRYKGVLSFDGQ-LPKFVFQGIHDQVDCQPSSHDWAEGEERVNRLVFIGHDLDQKSIEAGLRECMVAEE 252
            FN FM DL+   A DLYR KG+LSF GQ   KFVFQG+H+Q++  PS   W EGEER+NR VFIG +LD+  +  GL EC+  EE
Sbjct:   21 FNMFMMDLLKERAADLYRTKGLLSFQGQGNSKFVFQGVHEQINFGPSKKPWEEGEERLNRFVFIGKNLDRDELTKGLMECLYKEE 105          
BLAST of mRNA_P-wetherbeei_contig199.5.1 vs. uniprot
Match: A0A7S2SGY9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SGY9_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 3.610e-24
Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = 1
Query:    1 FNDFMADLMGSVAPDLYRYKGVLSFDGQ-LPKFVFQGIHDQVDCQPSSHDWAEGEERVNRLVFIGHDLDQKSIEAGLRECMVAEEA 255
            FN FM DL+   A DLYR KG+LSF GQ   KFVFQG+H+Q++  P+ + WAEGE R+N+ VFIG +LD+  +  GL EC+  EEA
Sbjct:   49 FNMFMMDLLRERAADLYRTKGLLSFHGQGNTKFVFQGVHEQINFGPAKNPWAEGETRLNKFVFIGKNLDRAELTKGLMECLYKEEA 134          
BLAST of mRNA_P-wetherbeei_contig199.5.1 vs. uniprot
Match: A0A7S0AEA3_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AEA3_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.280e-23
Identity = 46/85 (54.12%), Postives = 61/85 (71.76%), Query Frame = 1
Query:    1 FNDFMADLMGSVAPDLYRYKGVLSFDGQLP-KFVFQGIHDQVDCQPSSHDWAEGEERVNRLVFIGHDLDQKSIEAGLRECMVAEE 252
            FN FM DL+   A DLYR KG+LSF GQ   KFVFQG+H+Q++  P+ + WAEGEER+N+ VFIG +LD+K +   L EC+  E+
Sbjct:  120 FNMFMMDLLKDRAADLYRTKGLLSFHGQGDTKFVFQGVHEQINFGPAKNPWAEGEERINKFVFIGKNLDRKELTKSLMECIYKED 204          
BLAST of mRNA_P-wetherbeei_contig199.5.1 vs. uniprot
Match: A0A7S2K434_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K434_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 9.380e-23
Identity = 48/85 (56.47%), Postives = 59/85 (69.41%), Query Frame = 1
Query:    1 FNDFMADLMGSVAPDLYRYKGVLSFDGQ-LPKFVFQGIHDQVDCQPSSHDWAEGEERVNRLVFIGHDLDQKSIEAGLRECMVAEE 252
            FN FM DL+   A DLYR KG+LSF GQ   KFVFQG+H+Q++  PS   W EGEER+NR VFIG +LD+  +  GL EC+  EE
Sbjct:  259 FNMFMMDLLKERAADLYRTKGLLSFQGQGNSKFVFQGVHEQINFGPSKKPWEEGEERLNRFVFIGKNLDRDELTKGLMECLYKEE 343          
BLAST of mRNA_P-wetherbeei_contig199.5.1 vs. uniprot
Match: K0S4D8_THAOC (CobW C-terminal domain-containing protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S4D8_THAOC)

HSP 1 Score: 97.8 bits (242), Expect = 2.450e-22
Identity = 46/84 (54.76%), Postives = 59/84 (70.24%), Query Frame = 1
Query:    1 FNDFMADLMGSVAPDLYRYKGVLSFDGQ-LPKFVFQGIHDQVDCQPSSHDWAEGEERVNRLVFIGHDLDQKSIEAGLRECMVAE 249
            FN FM DL+   A DLYR KGVLSF GQ   KFVFQG+HDQ++  P+ + W E E+R+N+ VFIG +LD+K +  GL EC+  E
Sbjct:  280 FNMFMMDLLRERASDLYRTKGVLSFHGQGATKFVFQGVHDQINFGPAKNPWGEDEKRINKFVFIGKNLDRKELTEGLMECLYKE 363          
BLAST of mRNA_P-wetherbeei_contig199.5.1 vs. uniprot
Match: A0A7S2IJ00_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IJ00_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 3.780e-22
Identity = 46/85 (54.12%), Postives = 60/85 (70.59%), Query Frame = 1
Query:    1 FNDFMADLMGSVAPDLYRYKGVLSFDGQLP-KFVFQGIHDQVDCQPSSHDWAEGEERVNRLVFIGHDLDQKSIEAGLRECMVAEE 252
            FN FM DL+   A DLYR KG+LSF GQ   KFVFQG+H+Q++  P+   W EGEER+N+ VFIG +LD++ +  GL EC+  EE
Sbjct:  262 FNMFMMDLLRERAADLYRTKGMLSFHGQGDQKFVFQGVHEQINFGPAKKPWEEGEERINKFVFIGKNLDKQELTKGLMECLYKEE 346          
BLAST of mRNA_P-wetherbeei_contig199.5.1 vs. uniprot
Match: A0A6S8VW86_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8VW86_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 7.170e-22
Identity = 47/85 (55.29%), Postives = 58/85 (68.24%), Query Frame = 1
Query:    1 FNDFMADLMGSVAPDLYRYKGVLSFDGQLP-KFVFQGIHDQVDCQPSSHDWAEGEERVNRLVFIGHDLDQKSIEAGLRECMVAEE 252
            FN FM DL+   A DLYR KG+LSF GQ   KFVFQG+H+Q++  PS   W  GEERVN+ VFIG +LD+  +  GL EC+  EE
Sbjct:  260 FNMFMMDLLRERAADLYRTKGLLSFHGQGDTKFVFQGVHEQINFGPSKEPWKSGEERVNKFVFIGKNLDRTELTKGLMECLYKEE 344          
BLAST of mRNA_P-wetherbeei_contig199.5.1 vs. uniprot
Match: A0A7S2RIA0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RIA0_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.090e-21
Identity = 44/85 (51.76%), Postives = 58/85 (68.24%), Query Frame = 1
Query:    1 FNDFMADLMGSVAPDLYRYKGVLSFDGQLP-KFVFQGIHDQVDCQPSSHDWAEGEERVNRLVFIGHDLDQKSIEAGLRECMVAEE 252
            FN FM DL+   A DLYR KG+LSF GQ   KFVFQG+H+Q++  P+   W EGEER+N+ VFIG +L++  +   L EC+  EE
Sbjct:   80 FNMFMMDLLRERAADLYRTKGLLSFHGQGDTKFVFQGVHEQINFGPADKPWKEGEERINKFVFIGKNLNRDELTKSLMECLYKEE 164          
BLAST of mRNA_P-wetherbeei_contig199.5.1 vs. uniprot
Match: A0A6U1ZV79_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A6U1ZV79_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.330e-21
Identity = 46/85 (54.12%), Postives = 60/85 (70.59%), Query Frame = 1
Query:    1 FNDFMADLMGSVAPDLYRYKGVLSFDGQLP-KFVFQGIHDQVDCQPSSHDWAEGEERVNRLVFIGHDLDQKSIEAGLRECMVAEE 252
            FN FM DL+   A DLYR KG+LSF GQ   KFVFQG+H+Q++  P+   WAEGEERVN+ VFIG +L++K +   L EC+  E+
Sbjct:  256 FNMFMMDLLRERAEDLYRTKGLLSFHGQGDTKFVFQGVHEQINFGPAQKPWAEGEERVNKFVFIGKNLNRKELTKSLMECLYKED 340          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig199.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLE4_ECTSI4.960e-2551.81PRLI-interacting factor L-like (ISS) n=1 Tax=Ectoc... [more]
A0A7S2K368_9STRA5.640e-2556.47Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2SGY9_9STRA3.610e-2454.65Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0AEA3_9STRA2.280e-2354.12Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2K434_9STRA9.380e-2356.47Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
K0S4D8_THAOC2.450e-2254.76CobW C-terminal domain-containing protein n=2 Tax=... [more]
A0A7S2IJ00_9STRA3.780e-2254.12Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A6S8VW86_9STRA7.170e-2255.29Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2RIA0_9STRA1.090e-2151.76Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A6U1ZV79_9STRA1.330e-2154.12Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig199contigP-wetherbeei_contig199:10370..10979 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog242159.ABO94424
PFAMsCobW_C,WW,cobW
Model size261
Max annot lvl3041|Chlorophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.83e-21
EggNOG OGsCOG0523@1|root,KOG2743@2759|Eukaryota,37YU6@33090|Viridiplantae,34J43@3041|Chlorophyta
Ec32 ortholog descriptionCobalamin (vitamin B12) biosynthesis CobW-like, C-terminal
Ec32 orthologEc-27_002320.1
DescriptionCobalamin synthesis protein cobW C-terminal domain
Cds size249
COG categoryH
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186184.568183-CDS-P-wetherbeei_contig199:10369..105701683186184.568183-CDS-P-wetherbeei_contig199:10369..10570Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig199 10370..10570 -
1683186184.5784123-CDS-P-wetherbeei_contig199:10919..109671683186184.5784123-CDS-P-wetherbeei_contig199:10919..10967Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig199 10920..10967 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186184.5872734-UTR-P-wetherbeei_contig199:10967..109791683186184.5872734-UTR-P-wetherbeei_contig199:10967..10979Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig199 10968..10979 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig199.5.1prot_P-wetherbeei_contig199.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig199 10370..10967 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig199.5.1

>prot_P-wetherbeei_contig199.5.1 ID=prot_P-wetherbeei_contig199.5.1|Name=mRNA_P-wetherbeei_contig199.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=83bp
MADLMGSVAPDLYRYKGVLSFDGQLPKFVFQGIHDQVDCQPSSHDWAEGE
ERVNRLVFIGHDLDQKSIEAGLRECMVAEEAAA
back to top

mRNA from alignment at P-wetherbeei_contig199:10370..10979-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig199.5.1 ID=mRNA_P-wetherbeei_contig199.5.1|Name=mRNA_P-wetherbeei_contig199.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=610bp|location=Sequence derived from alignment at P-wetherbeei_contig199:10370..10979- (Phaeothamnion wetherbeei SAG_119_79)
TTCAACGACTTCATGGCGGACCTCATGGGCAGCGTCGCGCCCGACCTCTA CCGCTACAAGGTGAGACGAACGTCTAGACGAAGTGCGTGTGAGACAATAA GAAAGACATGATTGATGCGTTGCGTTTTTACTTTCCTGTTCGAATCTTCT ATAAGAAAGGTGGGCGCCGTCGGAACGAGGGCGGCGAAGCAGCAGCTCGG TCTGAAAATGCTTGTACATTCTGGAATTTACTTTACAATACTTCTCTTCC ATGTTATCAGCGACTGCTGATTTGGTAAGGTGCCGGCCTACTAGCCGGAT AAACGTTCACTTTGCCCTTCCTTAACCGCCTCGCGACGGCCAAACATGAC CTCTCTTCCGAGGAGAAACGACTGGACCTTCCGTTTATTCCGCCTATCGC GGCGACCAGGGCGTGCTGTCCTTCGACGGGCAGCTGCCCAAGTTCGTGTT CCAGGGCATTCATGACCAGGTGGACTGCCAGCCATCGTCGCATGACTGGG CCGAGGGCGAGGAGCGCGTCAACCGCCTCGTCTTCATCGGCCATGACCTT GACCAGAAGAGCATCGAGGCCGGCCTCAGGGAGTGCATGGTCGCCGAAGA GGCAGCGGCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig199:10370..10979-

>mRNA_P-wetherbeei_contig199.5.1 ID=mRNA_P-wetherbeei_contig199.5.1|Name=mRNA_P-wetherbeei_contig199.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=249bp|location=Sequence derived from alignment at P-wetherbeei_contig199:10370..10979- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGACCTCATGGGCAGCGTCGCGCCCGACCTCTACCGCTACAAGGG
CGTGCTGTCCTTCGACGGGCAGCTGCCCAAGTTCGTGTTCCAGGGCATTC
ATGACCAGGTGGACTGCCAGCCATCGTCGCATGACTGGGCCGAGGGCGAG
GAGCGCGTCAACCGCCTCGTCTTCATCGGCCATGACCTTGACCAGAAGAG
CATCGAGGCCGGCCTCAGGGAGTGCATGGTCGCCGAAGAGGCAGCGGCG
back to top