mRNA_P-wetherbeei_contig19812.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19812.1.1
Unique NamemRNA_P-wetherbeei_contig19812.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19812.1.1 vs. uniprot
Match: A0A7X9KIX2_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X9KIX2_9ACTN)

HSP 1 Score: 81.6 bits (200), Expect = 8.110e-15
Identity = 46/106 (43.40%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  205 LAQRIVEVNLGRTMNDGARFVTGALIEPGWQLNVPANAPPPGP--STHTVQAGDSYWAVSEHHLDEELHREATNREVLEYVHRMMDQNAPLLHHRDPALIIPGEVL 516
            L  RI+E+N GR    G +   G +   G ++ +P     P P    H V AGDSYW +++ HL   L R+AT  EVL+Y   +M  N PLL HR+PALIIPGE++
Sbjct:  185 LRDRIIELNAGR-FGPGGQQWQGGVFPAGMEVVLPQEQAVPTPLGPAHAVIAGDSYWEIADDHLSTALARQATPAEVLDYTLDLMSYNHPLLGHREPALIIPGELV 289          
BLAST of mRNA_P-wetherbeei_contig19812.1.1 vs. uniprot
Match: A0A812JVD8_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812JVD8_9DINO)

HSP 1 Score: 75.5 bits (184), Expect = 1.160e-12
Identity = 48/126 (38.10%), Postives = 67/126 (53.17%), Query Frame = 1
Query:   40 PALAVAPAISISHEATVSSVPQTLAPVGHTVE--VVRAGDSVWSIAERVAGGGD--VSVLAQRIVEVNLGRTMNDGARFVTGALIEPGWQLNVPANAPPPGPST-----HTVQAGDSYWAVSEHHL 390
            P +A APA+  + EA  +  P+  AP         VR GDSV+ IAER+AG     +S LA  I+++NLG+ M DG  F   A I+ GW L +P   P P   T     H V  G++ W+++E  L
Sbjct:  531 PTVAAAPAVGGNVEA--APAPERSAPASDATGSYTVRPGDSVYGIAERLAGPDQAAISALANGILDLNLGQRMVDGQMFSNAAYIDVGWVLQLPPGTPSPSSDTVTAAAHVVDEGETLWSIAEDEL 654          
BLAST of mRNA_P-wetherbeei_contig19812.1.1 vs. uniprot
Match: UPI0011612A98 (LysM peptidoglycan-binding domain-containing protein n=1 Tax=Streptomyces sp. CB02009 TaxID=1703938 RepID=UPI0011612A98)

HSP 1 Score: 73.9 bits (180), Expect = 2.860e-12
Identity = 56/145 (38.62%), Postives = 76/145 (52.41%), Query Frame = 1
Query:  124 HTVEVVRAGDSVWSIAERVAGGGDVSVLAQRIVEVNLGRTMNDGARFVTGALIEPGWQLNVP------ANAPPPGPS--THTVQAGDSYWAVSEHHLDEELHREATNREVLEYVHRMMDQNAPLLH---HRDPALIIPGEVLQFP 525
            +TV   R  +S+WSIAE+V G G+   L  +I + N GR M DG+ F   A I+PGW L +P      A A P  PS  ++TVQ GD+ W V+E    EEL       E+ E      ++ AP        +P LI+PG+VL  P
Sbjct:  171 YTVRDARPAESLWSIAEKVYGHGE---LYTKIADANEGRQMTDGSTFHADAPIQPGWILALPEAPTTQAPAAPSQPSGGSYTVQGGDTLWNVAE----EELGDGERYGELFE-----ANKGAPTPDGGTFDNPDLIVPGQVLDLP 303          
BLAST of mRNA_P-wetherbeei_contig19812.1.1 vs. uniprot
Match: A0A2G6KFH6_9ACTN (LysM domain-containing protein n=1 Tax=Ilumatobacter coccineus TaxID=467094 RepID=A0A2G6KFH6_9ACTN)

HSP 1 Score: 72.4 bits (176), Expect = 1.330e-11
Identity = 55/141 (39.01%), Postives = 72/141 (51.06%), Query Frame = 1
Query:  136 VVRAGDSVWSIAERVAGGGDVSV--LAQRIVEVNLGRTMNDGARFVTGALIEPGWQLNVP-----ANAP---PPGPSTHTVQAGDSYWAVSEHHLDEELHREATNREVLEYVH-RMMDQNAPLLHHRDPALIIPGEVLQFP 525
            VVR+GDS++ IA+R+AG    ++   A  I+E NLGR M DG RFV  A I+ GW L +P     A AP   P GP  H V  G+S W+++     + L      RE+ +    R  D    L    DP LI PG  L  P
Sbjct:  303 VVRSGDSIYGIAQRLAGPDAKAIDRFASAIIEANLGREMGDGQRFVNAAFIDVGWVLQLPPLPSLAQAPTLAPVGP-VHLVTEGESLWSIAA----DRLGAGERWREIFDLNQSRQFDDGRQL---DDPDLIHPGWELYLP 435          
BLAST of mRNA_P-wetherbeei_contig19812.1.1 vs. uniprot
Match: A0A4R7HW13_9ACTN (Two-component SAPR family response regulator n=1 Tax=Ilumatobacter fluminis TaxID=467091 RepID=A0A4R7HW13_9ACTN)

HSP 1 Score: 72.0 bits (175), Expect = 1.790e-11
Identity = 38/91 (41.76%), Postives = 52/91 (57.14%), Query Frame = 1
Query:  139 VRAGDSVWSIAERVAGG--GDVSVLAQRIVEVNLGRTMNDGARFVTGALIEPGWQLNVPANAPPPGPST-----HTVQAGDSYWAVSEHHL 390
            VR GDSV+ IAER+AG     +S LA  I+++NLG+ M DG  F   A I+ GW L +P   P P   T     H V  G++ W+++E  L
Sbjct:  206 VRPGDSVYGIAERLAGPDQASISALANSILDLNLGQRMVDGQMFSNAAYIDVGWVLQLPPGTPSPSSDTVTAAAHVVDEGETLWSIAEDEL 296          
BLAST of mRNA_P-wetherbeei_contig19812.1.1 vs. uniprot
Match: UPI0018F72F85 (LysM peptidoglycan-binding domain-containing protein n=1 Tax=Streptomyces sp. N35 TaxID=2795730 RepID=UPI0018F72F85)

HSP 1 Score: 71.6 bits (174), Expect = 2.460e-11
Identity = 57/158 (36.08%), Postives = 73/158 (46.20%), Query Frame = 1
Query:  115 PVGHTVEVVRAGDSVWSIAERVAGGGDVSVLAQRIVEVNLGRTMNDGARFVTGALIEPGWQLNVPANAPPPGPSTHTVQAG------DSYWAVSEHH-------------LDEELHREATNREVLEYVHRMMDQNAPLLH-HRDPALIIPGEVLQFPP 528
            P  +TV+  R  +S+WSIAE++ G G++  L   +V+ N GRTM DG RFV  A I PGWQL +PA+ P    S  + Q G      D   A  EH              LDE  +  A      E       +  P  H   DP LI PG+ L  PP
Sbjct:  173 PPTYTVQDARPAESLWSIAEKLYGRGELYTL---LVDANEGRTMVDGQRFVAEAPIRPGWQLALPADVPLAEESRISAQGGSVSVTADDVPAGGEHERVVAPGDSLSGIALDETGNAHAWP----ELFEENQGEEQPYGHTFTDPDLIYPGQKLTLPP 323          
BLAST of mRNA_P-wetherbeei_contig19812.1.1 vs. uniprot
Match: A0A3R9WCL2_9ACTN (LysM peptidoglycan-binding domain-containing protein n=1 Tax=Streptomyces sp. WAC01280 TaxID=2487424 RepID=A0A3R9WCL2_9ACTN)

HSP 1 Score: 70.1 bits (170), Expect = 8.330e-11
Identity = 48/128 (37.50%), Postives = 66/128 (51.56%), Query Frame = 1
Query:   40 PALAVAPAISISHEATVSSVPQTLAPVGHTVEVVRAGDSVWSIAERVAGGGDVSVLAQRIVEVNLGRTMNDGARFVTGALIEPGWQLNVP-----------ANAPPPGPSTHTVQAGDSYWAVSEHHL 390
            P  A APA    H A  +   +T A   +TV+  R  +S+WSIAE++ G G+   L  +I + N GR M DG+ F   A I PGW L +P           A +   GP+ +TVQ GD+ W V+E  L
Sbjct:  144 PDAAAAPA---EHSAQTTGTERTAART-YTVQDARPAESLWSIAEKLYGHGE---LYTKIADANEGRRMADGSVFRADAPIHPGWILTLPDAPATRTDDPDAPSRQAGPAAYTVQGGDTLWKVAEEEL 264          
BLAST of mRNA_P-wetherbeei_contig19812.1.1 vs. uniprot
Match: A0A6N2DFZ4_9ACTN (LysM peptidoglycan-binding domain-containing protein n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A6N2DFZ4_9ACTN)

HSP 1 Score: 69.3 bits (168), Expect = 1.530e-10
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 1
Query:  139 VRAGDSVWSIAERVAGGGDVSV--LAQRIVEVNLGRTMNDGARFVTGALIEPGWQLNVPANAPPPGPSTHTVQAGDSYWA 372
            V  GDSV++IAER+AG    S   +A+ I+++NLG  M DG RF   A IEPGW L++P +A     S H+  AG + W+
Sbjct:  192 VAPGDSVYAIAERLAGADRSSTVSIAEEILDLNLGAVMPDGQRFTNAAYIEPGWVLHLPVSASGTIDSAHSRSAGANGWS 271          
BLAST of mRNA_P-wetherbeei_contig19812.1.1 vs. uniprot
Match: UPI00165C69A9 (LysM peptidoglycan-binding domain-containing protein n=1 Tax=Streptomyces sp. TRM68367 TaxID=2758415 RepID=UPI00165C69A9)

HSP 1 Score: 63.5 bits (153), Expect = 1.210e-8
Identity = 37/108 (34.26%), Postives = 55/108 (50.93%), Query Frame = 1
Query:  124 HTVEVVRAGDSVWSIAERVAGGGDVSVLAQRIVEVNLGRTMNDGARFVTGALIEPGWQLNVP--------------ANAPPPGPSTHTVQAGDSYWAVSEHHLDEELH 405
            +TV+  R  +S+WSIAE++ G G+   L  +I + N G  M DG+ F     I+PGW L +P              A A   G  ++TV AGD+ W ++E  L +  H
Sbjct:  177 YTVQDARPAESLWSIAEKLYGHGE---LYTKIADANEGHQMADGSVFHANEPIQPGWTLLLPDDPTTGLDAQLEQTAPAQSAGTESYTVHAGDTLWGIAEDELGDGAH 281          
BLAST of mRNA_P-wetherbeei_contig19812.1.1 vs. uniprot
Match: UPI001C26E7B0 (LysM peptidoglycan-binding domain-containing protein n=1 Tax=Streptomyces sp. AC555_RSS877 TaxID=2823688 RepID=UPI001C26E7B0)

HSP 1 Score: 60.1 bits (144), Expect = 2.390e-7
Identity = 35/86 (40.70%), Postives = 47/86 (54.65%), Query Frame = 1
Query:  124 HTVEVVRAGDSVWSIAERVAGGGDVSVLAQRIVEVNLGRTMNDGARFVTGALIEPGWQLNVPANAPPPGPSTHTVQAGDSYWAVSE 381
            +TV  +R  +S+W IAER  G G+   L + I  +N GRTM DG  F   + ++PGWQL +P  A P G      Q GDS  A  +
Sbjct:  173 YTVRDMRPAESLWGIAERELGDGE---LWREIASLNEGRTMVDGQVFRANSFLQPGWQLKMPDTANPVGGVR--TQLGDSAPAAGQ 253          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19812.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A7X9KIX2_9ACTN8.110e-1543.40Uncharacterized protein (Fragment) n=1 Tax=Actinom... [more]
A0A812JVD8_9DINO1.160e-1238.10Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
UPI0011612A982.860e-1238.62LysM peptidoglycan-binding domain-containing prote... [more]
A0A2G6KFH6_9ACTN1.330e-1139.01LysM domain-containing protein n=1 Tax=Ilumatobact... [more]
A0A4R7HW13_9ACTN1.790e-1141.76Two-component SAPR family response regulator n=1 T... [more]
UPI0018F72F852.460e-1136.08LysM peptidoglycan-binding domain-containing prote... [more]
A0A3R9WCL2_9ACTN8.330e-1137.50LysM peptidoglycan-binding domain-containing prote... [more]
A0A6N2DFZ4_9ACTN1.530e-1045.00LysM peptidoglycan-binding domain-containing prote... [more]
UPI00165C69A91.210e-834.26LysM peptidoglycan-binding domain-containing prote... [more]
UPI001C26E7B02.390e-740.70LysM peptidoglycan-binding domain-containing prote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19812contigP-wetherbeei_contig19812:3..530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog436229.JOEH01000006_gene2917
PFAMsBTAD,LysM
Model size528
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.86e-11
EggNOG OGsCOG1652@1|root,COG3629@1|root,COG1652@2|Bacteria,COG3629@2|Bacteria,2I8YV@201174|Actinobacteria,2NG09@228398|Streptacidiphilus
DescriptionLysM domain
Cds size528
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186182.2719386-CDS-P-wetherbeei_contig19812:2..5301683186182.2719386-CDS-P-wetherbeei_contig19812:2..530Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19812 3..530 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19812.1.1prot_P-wetherbeei_contig19812.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19812 3..530 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19812.1.1

>prot_P-wetherbeei_contig19812.1.1 ID=prot_P-wetherbeei_contig19812.1.1|Name=mRNA_P-wetherbeei_contig19812.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=176bp
GLVGVLPVAGAAAPALAVAPAISISHEATVSSVPQTLAPVGHTVEVVRAG
DSVWSIAERVAGGGDVSVLAQRIVEVNLGRTMNDGARFVTGALIEPGWQL
NVPANAPPPGPSTHTVQAGDSYWAVSEHHLDEELHREATNREVLEYVHRM
MDQNAPLLHHRDPALIIPGEVLQFPP
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mRNA from alignment at P-wetherbeei_contig19812:3..530-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19812.1.1 ID=mRNA_P-wetherbeei_contig19812.1.1|Name=mRNA_P-wetherbeei_contig19812.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=528bp|location=Sequence derived from alignment at P-wetherbeei_contig19812:3..530- (Phaeothamnion wetherbeei SAG_119_79)
GGGTTGGTCGGCGTGCTGCCGGTCGCCGGTGCCGCGGCGCCTGCGTTGGC CGTCGCTCCGGCGATCAGCATCTCCCACGAAGCAACCGTGTCGTCCGTAC CGCAGACCCTCGCGCCCGTCGGGCACACCGTGGAGGTGGTCCGTGCCGGC GACTCGGTGTGGTCGATCGCCGAGCGAGTTGCGGGTGGTGGCGACGTCAG CGTGCTTGCGCAACGCATCGTCGAGGTGAACCTCGGTCGGACGATGAACG ACGGCGCCCGGTTCGTCACCGGCGCCCTCATCGAGCCCGGCTGGCAGCTG AACGTCCCCGCGAACGCCCCGCCGCCCGGGCCGTCGACGCACACCGTTCA AGCTGGCGACTCGTACTGGGCCGTGTCCGAACATCACCTCGACGAGGAGC TGCACCGCGAAGCGACCAACCGTGAGGTGCTCGAGTACGTGCACCGGATG ATGGATCAGAACGCGCCGCTCCTGCACCATCGCGATCCGGCGTTGATCAT CCCCGGCGAGGTGCTGCAGTTCCCGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19812:3..530-

>mRNA_P-wetherbeei_contig19812.1.1 ID=mRNA_P-wetherbeei_contig19812.1.1|Name=mRNA_P-wetherbeei_contig19812.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=528bp|location=Sequence derived from alignment at P-wetherbeei_contig19812:3..530- (Phaeothamnion wetherbeei SAG_119_79)
GGGTTGGTCGGCGTGCTGCCGGTCGCCGGTGCCGCGGCGCCTGCGTTGGC
CGTCGCTCCGGCGATCAGCATCTCCCACGAAGCAACCGTGTCGTCCGTAC
CGCAGACCCTCGCGCCCGTCGGGCACACCGTGGAGGTGGTCCGTGCCGGC
GACTCGGTGTGGTCGATCGCCGAGCGAGTTGCGGGTGGTGGCGACGTCAG
CGTGCTTGCGCAACGCATCGTCGAGGTGAACCTCGGTCGGACGATGAACG
ACGGCGCCCGGTTCGTCACCGGCGCCCTCATCGAGCCCGGCTGGCAGCTG
AACGTCCCCGCGAACGCCCCGCCGCCCGGGCCGTCGACGCACACCGTTCA
AGCTGGCGACTCGTACTGGGCCGTGTCCGAACATCACCTCGACGAGGAGC
TGCACCGCGAAGCGACCAACCGTGAGGTGCTCGAGTACGTGCACCGGATG
ATGGATCAGAACGCGCCGCTCCTGCACCATCGCGATCCGGCGTTGATCAT
CCCCGGCGAGGTGCTGCAGTTCCCGCCG
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