mRNA_P-wetherbeei_contig19805.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19805.1.1
Unique NamemRNA_P-wetherbeei_contig19805.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19805.1.1 vs. uniprot
Match: F0YHQ8_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHQ8_AURAN)

HSP 1 Score: 75.1 bits (183), Expect = 2.790e-13
Identity = 49/127 (38.58%), Postives = 68/127 (53.54%), Query Frame = 1 
Query:    4 FKHCIFQARARRVGSEQEACDFARVVAKGSQRGAYNSVAPMAFRVM-------KDGQREEGFDDYGDSGTGERLLCLLKNWNAYDIVIVVIRID-KGFMGASFIGARKFKLVVDRAKLLLESCYLQA 360
            FK   F   A  V S  +  +F     KG+QR       P A+R+         +G RE G DD GD G G++LL LL  W+  ++V+VV R D K  +G   +G R+FK+V+D AK +LE CYL +
Sbjct:   78 FKRSRFAGHAAPVASVGDV-EFVVAALKGAQR-----CVPYAYRLAGGAPGAPPEGARE-GRDDGGDVGVGDKLLHLLTQWDVENVVLVVTRDDSKSIVGGEALGVRRFKIVIDCAKSVLELCYLDS 197
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BLAST of mRNA_P-wetherbeei_contig19805.1.1 vs. uniprot
Match: A0A7S2CUC3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CUC3_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 4.330e-13
Identity = 38/88 (43.18%), Postives = 59/88 (67.05%), Query Frame = 1 
Query:  109 NSVAPMAFRVMKDGQREEGFDDYGDSGTGERLLCLLKNWNAYDIVIVVIRID-KGFMGASFI-----GARKFKLVVDRAKLLLESCYL 354
            ++V+P A+R+    + EEG DD+GD G GE+LL LL+ W+  +++IVV R D K   G SF+     G +++++V+ RAK +LE CYL
Sbjct:   76 SAVSPCAWRL----EAEEGHDDHGDLGAGEKLLGLLQRWDVRNVIIVVTRHDSKSLHGGSFLAPEKLGIQRYRIVLGRAKHVLEQCYL 159
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BLAST of mRNA_P-wetherbeei_contig19805.1.1 vs. uniprot
Match: A0A8J2SYM6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SYM6_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.820e-12
Identity = 41/117 (35.04%), Postives = 66/117 (56.41%), Query Frame = 1 
Query:    4 FKHCIFQARARRVGSEQEACDFARVVAKGSQRGAYNSVAPMAFRVMKDGQREEGFDDYGDSGTGERLLCLLKNWNAYDIVIVVIRID-KGFMGASFIGARKFKLVVDRAKLLLESCY 351
            F+   F+  A  V S+++   F       +       V+P AFR+   G   EG DD GD GTG++LL LL+ W+  ++ + V R D +  + +  +GA++FKL +D AK++LE+CY
Sbjct:   79 FRGMRFRGHAVPVVSDEDVAAFM------NDTSVAIGVSPCAFRLADGG---EGSDDNGDVGTGQKLLDLLRRWDVENVALCVTRDDSQSLVSSDVLGAKRFKLSLDCAKIVLEACY 186
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BLAST of mRNA_P-wetherbeei_contig19805.1.1 vs. uniprot
Match: A0A7S2W1G4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W1G4_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.010e-8
Identity = 41/123 (33.33%), Postives = 64/123 (52.03%), Query Frame = 1 
Query:    4 FKHCIFQARARRVGSEQEACDFARVVAKGSQRGAYNSVAPMAFRVMKDGQREEGFDDYGDSGTGERLLCLLKNWNAYDIVIVVIRIDK-GFMGASFI-----GARKFKLVVDRAKLLLESCYL 354
            F+   F   A  VGS  E       V  G +  A  +  P A+R+       E     GDSG+  +LL LL+ W+  +++I+V R D+ G  G SF+     G ++F+LV++RAK ++E CY+
Sbjct:   49 FRDSSFVGLAAAVGSPSEVLKVLEQVQHG-EPWASATAWPAAWRLTSG---VESVAANGDSGSAAKLLHLLRRWDVANVIIIVTRHDRWGAHGGSFLANERLGIQRFRLVLNRAKDVIEKCYV 167
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19805.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
F0YHQ8_AURAN2.790e-1338.58Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2CUC3_9STRA4.330e-1343.18Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A8J2SYM6_9STRA2.820e-1235.04Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2W1G4_9STRA2.010e-833.33Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19805contigP-wetherbeei_contig19805:728..1093 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog44056.XP_009039930.1
Preferred nameaguA
PFAMsGlyco_hydro_67C,Glyco_hydro_67M,Glyco_hydro_67N
Model size366
Max annot lvl2759|Eukaryota
KEGG koko:K01235
Hectar predicted targeting categoryother localisation
GOsGO:0000272,GO:0003674,GO:0003824,GO:0004553,GO:0005975,GO:0005976,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010383,GO:0010410,GO:0016052,GO:0016787,GO:0016798,GO:0043170,GO:0044036,GO:0044237,GO:0044238,GO:0044260,GO:0045491,GO:0045493,GO:0046559,GO:0071554,GO:0071704,GO:1901575
Exons1
Evalue4.58e-14
EggNOG OGsCOG3661@1|root,2QWS4@2759|Eukaryota
EC3.2.1.139
Descriptionalpha-glucuronidase activity
Cds size366
COG categoryG
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186181.8951752-CDS-P-wetherbeei_contig19805:727..10931683186181.8951752-CDS-P-wetherbeei_contig19805:727..1093Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19805 728..1093 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19805.1.1prot_P-wetherbeei_contig19805.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19805 728..1093 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19805.1.1

>prot_P-wetherbeei_contig19805.1.1 ID=prot_P-wetherbeei_contig19805.1.1|Name=mRNA_P-wetherbeei_contig19805.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=122bp
TFKHCIFQARARRVGSEQEACDFARVVAKGSQRGAYNSVAPMAFRVMKDG
QREEGFDDYGDSGTGERLLCLLKNWNAYDIVIVVIRIDKGFMGASFIGAR
KFKLVVDRAKLLLESCYLQARQ
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mRNA from alignment at P-wetherbeei_contig19805:728..1093+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19805.1.1 ID=mRNA_P-wetherbeei_contig19805.1.1|Name=mRNA_P-wetherbeei_contig19805.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig19805:728..1093+ (Phaeothamnion wetherbeei SAG_119_79)
ACCTTCAAGCACTGCATTTTTCAGGCGAGAGCGCGTCGTGTTGGCTCAGA
GCAGGAAGCCTGTGACTTCGCCAGGGTCGTCGCGAAAGGCAGTCAAAGAG
GTGCTTACAACAGCGTGGCTCCGATGGCTTTTCGTGTCATGAAAGACGGC
CAGAGAGAAGAAGGTTTCGACGACTATGGAGACAGCGGCACTGGCGAGCG
TCTTCTCTGCCTGCTGAAGAATTGGAACGCTTACGACATCGTCATTGTTG
TAATTCGCATCGATAAAGGCTTTATGGGCGCATCGTTCATCGGTGCGCGT
AAGTTTAAGCTTGTCGTCGACCGCGCCAAGCTGCTTCTAGAGAGTTGCTA
CTTGCAGGCTCGTCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19805:728..1093+

>mRNA_P-wetherbeei_contig19805.1.1 ID=mRNA_P-wetherbeei_contig19805.1.1|Name=mRNA_P-wetherbeei_contig19805.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig19805:728..1093+ (Phaeothamnion wetherbeei SAG_119_79)
ACCTTCAAGCACTGCATTTTTCAGGCGAGAGCGCGTCGTGTTGGCTCAGA
GCAGGAAGCCTGTGACTTCGCCAGGGTCGTCGCGAAAGGCAGTCAAAGAG
GTGCTTACAACAGCGTGGCTCCGATGGCTTTTCGTGTCATGAAAGACGGC
CAGAGAGAAGAAGGTTTCGACGACTATGGAGACAGCGGCACTGGCGAGCG
TCTTCTCTGCCTGCTGAAGAATTGGAACGCTTACGACATCGTCATTGTTG
TAATTCGCATCGATAAAGGCTTTATGGGCGCATCGTTCATCGGTGCGCGT
AAGTTTAAGCTTGTCGTCGACCGCGCCAAGCTGCTTCTAGAGAGTTGCTA
CTTGCAGGCTCGTCAG
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