mRNA_P-wetherbeei_contig19794.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19794.1.1
Unique NamemRNA_P-wetherbeei_contig19794.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19794.1.1 vs. uniprot
Match: A0A836CC64_9STRA (Dus domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC64_9STRA)

HSP 1 Score: 179 bits (454), Expect = 5.390e-54
Identity = 94/143 (65.73%), Postives = 112/143 (78.32%), Query Frame = 1 
Query:    4 VSQGTLPMRTLALSYGADTVWGEEIIDRAIVKTRRHVNLMLGTVDYVNANGRSAVFQTCPAEHGRMVFQIGTSNAVTALAAAQYVERDVAAIDINMASGCPKRFSTQDGMGAALMVAPESAADIVATLRRNLAVPVTAKMRLL 432
            V  G+LP+R LAL YGADTVWGEE++DR +    RHVN  LGT+DYVN NG+S  F+TC AE GR+VFQ+GTS+A  A AAA+ V RDVAA+D+NM  GCPKRFS Q GMGAAL+  P+ A DI+ATLRR L VPVTAK+RLL
Sbjct:   11 VRAGSLPLRLLALQYGADTVWGEELVDRRVSAAVRHVNHHLGTIDYVN-NGKSVAFRTCDAERGRVVFQLGTSDAARARAAAEAVARDVAAVDVNM--GCPKRFSIQGGMGAALLTNPDVACDIIATLRRALPVPVTAKIRLL 150
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BLAST of mRNA_P-wetherbeei_contig19794.1.1 vs. uniprot
Match: A0A072TSA3_MEDTR (tRNA-dihydrouridine synthase n=2 Tax=Medicago truncatula TaxID=3880 RepID=A0A072TSA3_MEDTR)

HSP 1 Score: 164 bits (416), Expect = 4.740e-48
Identity = 88/148 (59.46%), Postives = 104/148 (70.27%), Query Frame = 1 
Query:    4 VSQGTLPMRTLALSYGADTVWGEEIIDRAIVKTRRHVNLMLGTVDYVNANGRSAVFQTCPAEHGRMVFQIGTSNAVTALAAAQYVERDVAAIDINMASGCPKRFSTQDGMGAALMVAPESAADIVATLRRNLAVPVTAKMRLLASEHD 447
            V  GTLP+R LA  YGAD  +GEEI+D  I+K  R +N  LG+ D+V     S VF+TC  E  R+VFQIGTSNAV AL AAQ V  DVAA+DINM  GCPK FS   GMGAAL+  PE  +DI+ TLRRNL++PVT K+RLL S HD
Sbjct:   13 VRVGTLPLRLLAAEYGADITYGEEIVDHKIIKCERRINEHLGSTDFVEKGTESVVFRTCDQEKNRVVFQIGTSNAVRALTAAQLVCNDVAAVDINM--GCPKAFSLSGGMGAALLSKPELISDILTTLRRNLSLPVTCKIRLLKSPHD 158
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BLAST of mRNA_P-wetherbeei_contig19794.1.1 vs. uniprot
Match: A0A3R7JYU6_9STRA (U1-type domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JYU6_9STRA)

HSP 1 Score: 170 bits (431), Expect = 8.100e-48
Identity = 89/148 (60.14%), Postives = 111/148 (75.00%), Query Frame = 1 
Query:    4 VSQGTLPMRTLALSYGADTVWGEEIIDRAIVKTRRHVNLMLGTVDYVNANGRSAVFQTCPAEHGRMVFQIGTSNAVTALAAAQYVERDVAAIDINMASGCPKRFSTQDGMGAALMVAPESAADIVATLRRNLAVPVTAKMRLLASEHD 447
            V  GTLP+R L+L YGAD V+GEEI+D+ I+   R  N +L TVD+V+ NG S VF+TCP E G++VFQIGT++AV AL AA+ V RDVAA+DINM  GCPK FS Q GMGAAL+  PE A DI+ TLRRNL +PV+ K+RLL+   D
Sbjct:   15 VRSGTLPLRLLSLRYGADLVYGEEIVDKRIISAVRVPNAVLDTVDFVSRNGDSVVFRTCPEETGKVVFQIGTADAVLALKAAEQVARDVAAVDINM--GCPKHFSVQGGMGAALLRKPEVACDIIKTLRRNLNIPVSCKIRLLSETQD 160
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BLAST of mRNA_P-wetherbeei_contig19794.1.1 vs. uniprot
Match: D8LPM6_ECTSI (Dus domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM6_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 1.100e-47
Identity = 95/147 (64.63%), Postives = 111/147 (75.51%), Query Frame = 1 
Query:    4 VSQGTLPMRTLALSYGADTVWGEEIIDRAIVKTRRHVNLMLGTVDYVNANGRSAV---FQTCPA-EHGRMVFQIGTSNAVTALAAAQYVERDVAAIDINMASGCPKRFSTQDGMGAALMVAPESAADIVATLRRNLAVPVTAKMRLL 432
            V  GTLP R LAL YGADTV+ EE+IDR +V   R  N +LGTVDYV   G+  +   FQTCPA E GR+V+QIGT +A  AL AAQ+VERDVAA+DINM  GCPKRFS Q GMGAAL+  P+ AADIV TLRRNL+VPV+ K+RLL
Sbjct:   21 VRAGTLPFRALALRYGADTVFTEEVIDRRVVNAVRTENPVLGTVDYVEKRGKKGIATPFQTCPALERGRLVYQIGTGDATNALRAAQHVERDVAAVDINM--GCPKRFSLQGGMGAALLKQPQVAADIVGTLRRNLSVPVSVKIRLL 165
[Close]
BLAST of mRNA_P-wetherbeei_contig19794.1.1 vs. uniprot
Match: A0A396GKI1_MEDTR (tRNA-dihydrouridine synthase n=2 Tax=Medicago truncatula TaxID=3880 RepID=A0A396GKI1_MEDTR)

HSP 1 Score: 164 bits (416), Expect = 2.680e-47
Identity = 88/148 (59.46%), Postives = 104/148 (70.27%), Query Frame = 1 
Query:    4 VSQGTLPMRTLALSYGADTVWGEEIIDRAIVKTRRHVNLMLGTVDYVNANGRSAVFQTCPAEHGRMVFQIGTSNAVTALAAAQYVERDVAAIDINMASGCPKRFSTQDGMGAALMVAPESAADIVATLRRNLAVPVTAKMRLLASEHD 447
            V  GTLP+R LA  YGAD  +GEEI+D  I+K  R +N  LG+ D+V     S VF+TC  E  R+VFQIGTSNAV AL AAQ V  DVAA+DINM  GCPK FS   GMGAAL+  PE  +DI+ TLRRNL++PVT K+RLL S HD
Sbjct:   13 VRVGTLPLRLLAAEYGADITYGEEIVDHKIIKCERRINEHLGSTDFVEKGTESVVFRTCDQEKNRVVFQIGTSNAVRALTAAQLVCNDVAAVDINM--GCPKAFSLSGGMGAALLSKPELISDILTTLRRNLSLPVTCKIRLLKSPHD 158
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BLAST of mRNA_P-wetherbeei_contig19794.1.1 vs. uniprot
Match: A0A803L1Z1_CHEQI (tRNA-dihydrouridine synthase n=3 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803L1Z1_CHEQI)

HSP 1 Score: 163 bits (412), Expect = 6.570e-47
Identity = 88/148 (59.46%), Postives = 105/148 (70.95%), Query Frame = 1 
Query:    4 VSQGTLPMRTLALSYGADTVWGEEIIDRAIVKTRRHVNLMLGTVDYVNANGRSAVFQTCPAEHGRMVFQIGTSNAVTALAAAQYVERDVAAIDINMASGCPKRFSTQDGMGAALMVAPESAADIVATLRRNLAVPVTAKMRLLASEHD 447
            V  GTLP+R LA  YGAD  +GEEIID  +VK  R VN  LGT+D V    +S VF+TCP EH R+VFQ+GTS+AV AL AAQ V  DVAA+DINM  GCP+ FS   GMGAAL+  PE+  DI+ TL+RNL  PVT K+RLL + HD
Sbjct:   13 VRVGTLPLRLLAAEYGADITYGEEIIDHKLVKCDRIVNDYLGTIDVVEKGTQSVVFRTCPEEHNRVVFQMGTSDAVRALKAAQLVCNDVAAVDINM--GCPRSFSISGGMGAALLSKPETIHDILTTLKRNLNTPVTCKIRLLKTSHD 158
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BLAST of mRNA_P-wetherbeei_contig19794.1.1 vs. uniprot
Match: A0A6H5KTF8_9PHAE (Dus domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTF8_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 1.500e-46
Identity = 93/147 (63.27%), Postives = 110/147 (74.83%), Query Frame = 1 
Query:    4 VSQGTLPMRTLALSYGADTVWGEEIIDRAIVKTRRHVNLMLGTVDYVNANGRSAV---FQTCPA-EHGRMVFQIGTSNAVTALAAAQYVERDVAAIDINMASGCPKRFSTQDGMGAALMVAPESAADIVATLRRNLAVPVTAKMRLL 432
            V  GTLP R LAL YGADTV+ EE+IDR +V   R  N +LGTVDYV   G+  +   FQTCPA E GR+V+QIGT +A  AL AAQ+VERDVAA+DINM  GCPK+FS Q GMGAAL+  P+ AADIV  LRRNL+VPV+ K+RLL
Sbjct:   21 VRAGTLPFRALALRYGADTVFTEEVIDRRVVNAVRTENPVLGTVDYVEKRGKKGIATPFQTCPALERGRLVYQIGTGDATNALRAAQHVERDVAAVDINM--GCPKKFSLQGGMGAALLKQPQVAADIVGILRRNLSVPVSVKIRLL 165
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BLAST of mRNA_P-wetherbeei_contig19794.1.1 vs. uniprot
Match: H3GYM5_PHYRM (U1-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GYM5_PHYRM)

HSP 1 Score: 166 bits (420), Expect = 3.080e-46
Identity = 87/148 (58.78%), Postives = 110/148 (74.32%), Query Frame = 1 
Query:    4 VSQGTLPMRTLALSYGADTVWGEEIIDRAIVKTRRHVNLMLGTVDYVNANGRSAVFQTCPAEHGRMVFQIGTSNAVTALAAAQYVERDVAAIDINMASGCPKRFSTQDGMGAALMVAPESAADIVATLRRNLAVPVTAKMRLLASEHD 447
            V  GTLP+R L+L YGAD V+GEEI+D+ I+   R  N ++ +VD+V+ NG S VF+TCP E G++VFQIGT++AV AL AA+ V RDVAA+DINM  GCPK FS Q GMGAAL+  PE A DI+ TLRRNL +PV+ K+RLL    D
Sbjct:   15 VRSGTLPLRLLSLRYGADLVYGEEIVDKRIISAVRMKNEVINSVDFVSRNGDSVVFRTCPEEAGKVVFQIGTADAVLALKAAEAVARDVAAVDINM--GCPKHFSVQGGMGAALLRKPEVACDIIKTLRRNLNIPVSCKIRLLPEIQD 160
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BLAST of mRNA_P-wetherbeei_contig19794.1.1 vs. uniprot
Match: A0A2Z6MVM0_TRISU (tRNA-dihydrouridine synthase n=2 Tax=Trifolium TaxID=3898 RepID=A0A2Z6MVM0_TRISU)

HSP 1 Score: 162 bits (409), Expect = 3.750e-46
Identity = 88/148 (59.46%), Postives = 104/148 (70.27%), Query Frame = 1 
Query:    4 VSQGTLPMRTLALSYGADTVWGEEIIDRAIVKTRRHVNLMLGTVDYVNANGRSAVFQTCPAEHGRMVFQIGTSNAVTALAAAQYVERDVAAIDINMASGCPKRFSTQDGMGAALMVAPESAADIVATLRRNLAVPVTAKMRLLASEHD 447
            V  GTLP+R LA  YGAD  +GEEI+D  IVK  R +N +LG+ D+V     S VF+TC  E  ++VFQIGTS+AV AL AAQ V  DVAAIDINM  GCPK FS   GMGAAL+  PE  +DI+ TLRRNL +PVT K+RLL S HD
Sbjct:   13 VRVGTLPLRLLAAEYGADITYGEEIVDHKIVKCDRRINELLGSTDFVEKGTESVVFRTCDQEKDKVVFQIGTSDAVRALTAAQLVCNDVAAIDINM--GCPKPFSLSGGMGAALLSKPELISDILTTLRRNLTLPVTCKIRLLKSPHD 158
[Close]
BLAST of mRNA_P-wetherbeei_contig19794.1.1 vs. uniprot
Match: A0A1S2YTM0_CICAR (tRNA-dihydrouridine(20) synthase [NAD(P)+]-like n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S2YTM0_CICAR)

HSP 1 Score: 161 bits (408), Expect = 4.450e-46
Identity = 85/148 (57.43%), Postives = 105/148 (70.95%), Query Frame = 1 
Query:    4 VSQGTLPMRTLALSYGADTVWGEEIIDRAIVKTRRHVNLMLGTVDYVNANGRSAVFQTCPAEHGRMVFQIGTSNAVTALAAAQYVERDVAAIDINMASGCPKRFSTQDGMGAALMVAPESAADIVATLRRNLAVPVTAKMRLLASEHD 447
            V  GTLP+R LA  YGAD ++GEEI+D  IVK  R +N +LG++D+V     + VF+TC  E  ++VFQIGTS+A  AL AAQ +  DVAAIDINM  GCPK FS   GMGAAL+  PE   DI+ TLRRNL++PVT K+RLL S HD
Sbjct:   13 VRVGTLPLRLLAAEYGADIIYGEEIVDHKIVKCERRINELLGSIDFVEKGSEAVVFRTCDQEKDKVVFQIGTSDAARALTAAQLLCNDVAAIDINM--GCPKAFSLSGGMGAALLSKPELIHDILTTLRRNLSLPVTCKIRLLKSPHD 158
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19794.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CC64_9STRA5.390e-5465.73Dus domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A072TSA3_MEDTR4.740e-4859.46tRNA-dihydrouridine synthase n=2 Tax=Medicago trun... [more]
A0A3R7JYU6_9STRA8.100e-4860.14U1-type domain-containing protein n=3 Tax=Phytopht... [more]
D8LPM6_ECTSI1.100e-4764.63Dus domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A396GKI1_MEDTR2.680e-4759.46tRNA-dihydrouridine synthase n=2 Tax=Medicago trun... [more]
A0A803L1Z1_CHEQI6.570e-4759.46tRNA-dihydrouridine synthase n=3 Tax=Chenopodium q... [more]
A0A6H5KTF8_9PHAE1.500e-4663.27Dus domain-containing protein n=1 Tax=Ectocarpus s... [more]
H3GYM5_PHYRM3.080e-4658.78U1-type domain-containing protein n=1 Tax=Phytopht... [more]
A0A2Z6MVM0_TRISU3.750e-4659.46tRNA-dihydrouridine synthase n=2 Tax=Trifolium Tax... [more]
A0A1S2YTM0_CICAR4.450e-4657.43tRNA-dihydrouridine(20) synthase [NAD(P)+]-like n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19794contigP-wetherbeei_contig19794:243..1165 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LPM6
PFAMsDus,zf-met
Model size456
Max annot lvl2759|Eukaryota
KEGG koko:K05543
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.81e-45
EggNOG OGsCOG0042@1|root,KOG2334@2759|Eukaryota
EC1.3.1.91
DescriptiontRNA-dihydrouridine20 synthase activity
Cds size432
COG categoryJ
BRITEko00000,ko01000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186181.3581052-CDS-P-wetherbeei_contig19794:242..4011683186181.3581052-CDS-P-wetherbeei_contig19794:242..401Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19794 243..401 -
1683186181.3691092-CDS-P-wetherbeei_contig19794:653..6981683186181.3691092-CDS-P-wetherbeei_contig19794:653..698Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19794 654..698 -
1683186181.3786492-CDS-P-wetherbeei_contig19794:913..11411683186181.3786492-CDS-P-wetherbeei_contig19794:913..1141Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19794 914..1141 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186181.3910964-UTR-P-wetherbeei_contig19794:1141..11651683186181.3910964-UTR-P-wetherbeei_contig19794:1141..1165Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19794 1142..1165 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19794.1.1prot_P-wetherbeei_contig19794.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19794 243..1141 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19794.1.1

>prot_P-wetherbeei_contig19794.1.1 ID=prot_P-wetherbeei_contig19794.1.1|Name=mRNA_P-wetherbeei_contig19794.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=144bp
MRTLALSYGADTVWGEEIIDRAIVKTRRHVNLMLGTVDYVNANGRSAVFQ
TCPAEHGRMVFQIGTSNAVTALAAAQYVERDVAAIDINMASGCPKRFSTQ
DGMGAALMVAPESAADIVATLRRNLAVPVTAKMRLLASEHDVR*
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mRNA from alignment at P-wetherbeei_contig19794:243..1165-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19794.1.1 ID=mRNA_P-wetherbeei_contig19794.1.1|Name=mRNA_P-wetherbeei_contig19794.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=923bp|location=Sequence derived from alignment at P-wetherbeei_contig19794:243..1165- (Phaeothamnion wetherbeei SAG_119_79)
TTCGTCTCTCAGGGAACGTTGCCGATGAGGACATTGGCTCTGAGCTACGG
AGCCGACACTGTGTGGGGAGAAGAAATCATTGACCGTGCTATTGTGAAGA
CCCGGCGGCACGTGAACCTGATGCTTGGGACCGTCGACTATGTCAACGCC
AACGGGCGCTCGGCTGTCTTCCAAACGTGTCCGGCCGAGCACGGTAGGAT
GGTGTTTCAGATTGGCACGTCCAACGCTGTGACGGCGCTCGCGGCGGCGC
AGGTGAGCTTGCACGGCTTTCTCATTTCCGCAAGCACCCATGCTTTTGCG
GTGAAAGTCACCTAGAGCTTTCCCCTCTGACGAAGAGAATTGCAATTTCA
TTCGACACTCCAGCACCCGTGAGAGAACGCTACCGTAACGGAATCTGGAG
GCGCTACCGTCCCTCGCTTTCCCTTCCGCCTTGTCGCCGCCACATCTCCC
GTTCCGCCTGGTTACAGTATGTGGAGCGCGACGTGGCTGCCATCGACATT
AACATGGCGAGTGTCCGCTTTTCTATGTATAGCACGATTCGCTTATCACT
CTTTTTTCGAACAAATTTGCGGCACTGGGCAAGCAGCGCCTTGTGATCCG
AATCCGGCCAAGTGAAAATTTTGGTTTGTAGACGGAAAAAAGGAAGAAAT
GCGCTTTATTATAGTGTTCTTGGGAAAAAATCCTGTGACGAGTCGTCGCC
GTTCGCCCCTGCTCTCCCCCGCCCGCCGCTTGCCTCTGCGTGGAACGCAA
CAACGCCGCCTCAGGGCTGCCCGAAGCGGTTCTCGACGCAGGACGGCATG
GGCGCGGCGCTCATGGTGGCCCCGGAAAGCGCCGCCGACATCGTGGCGAC
GCTGCGGCGGAACCTCGCCGTGCCCGTCACGGCCAAGATGCGCTTGCTGG
CCTCTGAACACGATGTGAGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19794:243..1165-

>mRNA_P-wetherbeei_contig19794.1.1 ID=mRNA_P-wetherbeei_contig19794.1.1|Name=mRNA_P-wetherbeei_contig19794.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig19794:243..1165- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGGACATTGGCTCTGAGCTACGGAGCCGACACTGTGTGGGGAGAAGA
AATCATTGACCGTGCTATTGTGAAGACCCGGCGGCACGTGAACCTGATGC
TTGGGACCGTCGACTATGTCAACGCCAACGGGCGCTCGGCTGTCTTCCAA
ACGTGTCCGGCCGAGCACGGTAGGATGGTGTTTCAGATTGGCACGTCCAA
CGCTGTGACGGCGCTCGCGGCGGCGCAGTATGTGGAGCGCGACGTGGCTG
CCATCGACATTAACATGGCGAGTGGCTGCCCGAAGCGGTTCTCGACGCAG
GACGGCATGGGCGCGGCGCTCATGGTGGCCCCGGAAAGCGCCGCCGACAT
CGTGGCGACGCTGCGGCGGAACCTCGCCGTGCCCGTCACGGCCAAGATGC
GCTTGCTGGCCTCTGAACACGATGTGAGGTGA
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