mRNA_P-wetherbeei_contig19735.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19735.1.1
Unique NamemRNA_P-wetherbeei_contig19735.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19735.1.1 vs. uniprot
Match: A0A1Z9UBS6_9GAMM (Uncharacterized protein n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1Z9UBS6_9GAMM)

HSP 1 Score: 269 bits (688), Expect = 5.230e-89
Identity = 134/171 (78.36%), Postives = 147/171 (85.96%), Query Frame = 1
Query:    1 PEDAYAYVVYQTGALQAALRVHGMKLHHIKPHGAFYSVLRTNEALAEAVADAIVAIADQPMLYWPAPTDAAMPVAARKRGIRVVGEIYPDLSYAPDGALVLQRAKHVTDTEFAAAQVRRYVETGKVLANDGSLLALDAESLCIHGDGPNATEVGAAVRAALAEIGCRIAPV 513
            PEDA+AY VYQTGALQAAL+  GMKLHH+KPHGA YSVLRT+EALA AVADAI  + D PMLYWPAPTDAAMPVAARK+GIRVVGEIYPDL YA DG LV+QR KH TD  FA +QV+RYVETGKV A DGSL+ LDAE+LCIHGDGPNAT+VGAA+R  L EIGC IAPV
Sbjct:   78 PEDAFAYTVYQTGALQAALKTAGMKLHHVKPHGALYSVLRTDEALATAVADAISLLTDNPMLYWPAPTDAAMPVAARKKGIRVVGEIYPDLQYAADGTLVIQREKHETDVGFAVSQVKRYVETGKVEAIDGSLVTLDAEALCIHGDGPNATDVGAAIRLTLGEIGCEIAPV 248          
BLAST of mRNA_P-wetherbeei_contig19735.1.1 vs. uniprot
Match: A0A3D5DG85_9GAMM (LamB/YcsF family protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DG85_9GAMM)

HSP 1 Score: 251 bits (641), Expect = 7.520e-82
Identity = 126/172 (73.26%), Postives = 143/172 (83.14%), Query Frame = 1
Query:    1 PEDAYAYVVYQTGALQAALRVHGMKLHHIKPHGAFYSVLRTNEALAEAVADAIVAIADQPMLYWPAPTDAAMPVAARKRGIRVVGEIYPDLSYAPDGALVLQRAKHVTDTEFAAAQVRRYVETGKVLANDGSLLALDAESLCIHGDGPNATEVGAAVRAALAEIGCRIAPVM 516
            PEDAYAYVVYQ GALQ AL   GM+LHHIKPHGAFYSVL+T+E LA AVA AI  +++ P+LYWPAPT AAMP AA+K GIRVVGEIYPDL YAPDG+L+LQR KH TD +FAA+QV+RYVETGKV ANDGSL+ LDAESLCIHGDGPN+  V  A+R  L  IGC+I PVM
Sbjct:   78 PEDAYAYVVYQVGALQGALATQGMQLHHIKPHGAFYSVLKTDEDLATAVAAAIKELSEDPILYWPAPTTAAMPSAAKKLGIRVVGEIYPDLMYAPDGSLILQREKHETDVKFAASQVQRYVETGKVEANDGSLVELDAESLCIHGDGPNSVSVADAIRETLDGIGCKIDPVM 249          
BLAST of mRNA_P-wetherbeei_contig19735.1.1 vs. uniprot
Match: A0A7Y3M6T2_9DELT (5-oxoprolinase subunit PxpA n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y3M6T2_9DELT)

HSP 1 Score: 235 bits (600), Expect = 1.540e-75
Identity = 115/173 (66.47%), Postives = 136/173 (78.61%), Query Frame = 1
Query:    1 PEDAYAYVVYQTGALQAALRVHGMKLHHIKPHGAFYSVLRTNEALAEAVADAIVAIADQPMLYWPAPTDAAMPVAARKRGIRVVGEIYPDLSYAPDGALVLQRAKHVTDTEFAAAQVRRYVETGKVLANDGSLLALDAESLCIHGDGPNATEVGAAVRAALAEIGCRIAPVMA 519
            PEDA+AYVVYQ+GALQ AL +HG+ LHHIKPHGAFYS+LRT E LA AVA+A+  +   P+LYWPAPTD+A+P A +K+GIRVVGEIYPDL YAPDG+L+LQRAKH TD   A AQV RYV +G+V A DGS +ALDAESLCIHGDGPN  EV  A+R  L  + C + P  A
Sbjct:   85 PEDAHAYVVYQSGALQGALTMHGLSLHHIKPHGAFYSILRTEEDLAAAVAEAVGKLTADPVLYWPAPTDSALPAACKKKGIRVVGEIYPDLEYAPDGSLILQRAKHETDVAQACAQVERYVTSGEVEAIDGSRIALDAESLCIHGDGPNCVEVVTAIRQTLKNLECEVKPATA 257          
BLAST of mRNA_P-wetherbeei_contig19735.1.1 vs. uniprot
Match: A0A4R4XSF7_9ACTN (LamB/YcsF family protein n=1 Tax=Actinomadura sp. KC06 TaxID=2530369 RepID=A0A4R4XSF7_9ACTN)

HSP 1 Score: 169 bits (427), Expect = 2.360e-49
Identity = 87/172 (50.58%), Postives = 115/172 (66.86%), Query Frame = 1
Query:    1 PEDAYAYVVYQTGALQAALRVHGMKLHHIKPHGAFYSVLRTNEALAEAVADAIVAIADQPMLYWPAPT-DAAMPVAARKRGIRVVGEIYPDLSYAPDGALVLQRAKHVTDTEFAAAQVRRYVETGKVLANDGSLLALDAESLCIHGDGPNATEVGAAVRAALAEIGCRIAPV 513
            PEDAYAY VYQ GA+QAAL   GM+LHH+KPHG+F S++   EA A+AV  A+      PM+Y  AP  D  +  AA   G+RVV E+YPDL YA DG++++QR KH TD E A  Q++R +  G+VL   G  L++ AES+C+HGDGPNA EV  A+   + E G R++ V
Sbjct:   84 PEDAYAYTVYQVGAVQAALAAEGMELHHVKPHGSFMSMVMYEEATAQAVMSAVKNTCRSPMVYVTAPVRDTELEAAAEAHGVRVVQEVYPDLEYADDGSVIVQRRKHETDIEKAQDQLKRVLNDGEVLTVTGKRLSVQAESVCVHGDGPNALEVAQALLDVVGESGRRVSAV 255          
BLAST of mRNA_P-wetherbeei_contig19735.1.1 vs. uniprot
Match: A0A1G6A8L8_9HYPH (UPF0271 protein n=1 Tax=Bauldia litoralis TaxID=665467 RepID=A0A1G6A8L8_9HYPH)

HSP 1 Score: 164 bits (414), Expect = 2.770e-47
Identity = 85/166 (51.20%), Postives = 114/166 (68.67%), Query Frame = 1
Query:    1 PEDAYAYVVYQTGALQAALRVHGMKLHHIKPHGAFYSVLRTNEALAEAVADAIVAIADQPMLYWPAPTDA-AMPVAARKRGIRVVGEIYPDLSYAPDGALVLQRAKHVTDTEFAAAQVRRYVETGKVLANDGSLLALDAESLCIHGDGPNATEVGAAVRAALAEIG 495
            P +AYA VVYQ GAL+  L   GM LHH+KPHGA Y +L   + LA AVA+AI      P+LYWPAP +  A+P AA K GI VVGE+Y DLSY+ +  L+++R K V D +  A+++RRY++ G+V++  G  + LDA+++CIHGDGPNA E+   VRA L E G
Sbjct:   82 PAEAYAAVVYQVGALKGFLAPLGMTLHHVKPHGALYGMLNDQDDLAAAVAEAIRDTCPSPLLYWPAPVERHALPRAAAKLGIPVVGEVYFDLSYSDEANLMVERKKSVKDLDDVASRLRRYLDKGEVVSVSGKAIPLDAQTICIHGDGPNAVEIAQRVRAVLEEDG 247          
BLAST of mRNA_P-wetherbeei_contig19735.1.1 vs. uniprot
Match: UPI0003F66183 (LamB/YcsF family protein n=1 Tax=Pseudonocardia spinosispora TaxID=103441 RepID=UPI0003F66183)

HSP 1 Score: 160 bits (404), Expect = 7.510e-46
Identity = 83/172 (48.26%), Postives = 110/172 (63.95%), Query Frame = 1
Query:    1 PEDAYAYVVYQTGALQAALRVHGMKLHHIKPHGAFYSVLRTNEALAEAVADAIVAIADQPMLYWPAPTD-AAMPVAARKRGIRVVGEIYPDLSYAPDGALVLQRAKHVTDTEFAAAQVRRYVETGKVLANDGSLLALDAESLCIHGDGPNATEVGAAVRAALAEIGCRIAPV 513
            PE+  A + YQ GAL   L    M LHH+KPHGAFY+ LR NE    A A A+  IA + ++YWPAP   AA        G +V+ EIYPDLSY+P+G L++QR K  TD  FA++QV+R++  G V A DG+ +  +A S+CIH DGPNA +V   VRAA+ E+G  IA +
Sbjct:   87 PEEVAAIITYQVGALTGFLTARNMPLHHVKPHGAFYAYLRDNETAGAAAAAAVHRIAPETLVYWPAPAQGAAFCEELGALGHQVITEIYPDLSYSPEGKLIIQRRKLKTDLAFASSQVKRFLTEGVVAAEDGTPIRHEASSVCIHSDGPNAVDVAHTVRAAITEVGSSIAAI 258          
BLAST of mRNA_P-wetherbeei_contig19735.1.1 vs. uniprot
Match: A0A2E9M8Z4_9CHLR (Uncharacterized protein n=1 Tax=Dehalococcoidales bacterium TaxID=2026733 RepID=A0A2E9M8Z4_9CHLR)

HSP 1 Score: 155 bits (393), Expect = 4.330e-44
Identity = 79/172 (45.93%), Postives = 107/172 (62.21%), Query Frame = 1
Query:    1 PEDAYAYVVYQTGALQAALRVHGMKLHHIKPHGAFYSVLRTNEALAEAVADAIVAIADQPMLYWPAPTDA-AMPVAARKRGIRVVGEIYPDLSYAPDGALVLQRAKHVTDTEFAAAQVRRYVETGKVLANDGSLLALDAESLCIHGDGPNATEVGAAVRAALAEIGCRIAPV 513
            PE+AYAY++YQ GAL+A L  H M LHHIKPHGA Y +L  +  LA  V  AI  +  QP +YWP P D   +P  AR  GI VV E+Y D  Y  DG L++ R +   D +  + +VR ++ + +V+  D   L +DA S+C+HGDGPNA E+ AA++  LAE  CR+  V
Sbjct:   94 PEEAYAYILYQVGALRAILNSHNMTLHHIKPHGALYMMLNDDVDLARPVVRAIQELCPQPRMYWPGPVDGLVLPELARDAGIEVVSEVYFDREYDNDGRLIVPREQSAIDLDTISERVRIFLHSNEVITIDNDRLKIDARSICVHGDGPNARELLAAIKVVLAEEECRVEAV 265          
BLAST of mRNA_P-wetherbeei_contig19735.1.1 vs. uniprot
Match: A0A2S6R3D6_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium MarineAlpha10_Bin2 TaxID=2013104 RepID=A0A2S6R3D6_9PROT)

HSP 1 Score: 154 bits (390), Expect = 1.100e-43
Identity = 79/173 (45.66%), Postives = 115/173 (66.47%), Query Frame = 1
Query:    1 PEDAYAYVVYQTGALQAALRVHGMKLHHIKPHGAFYSVLRTNEALAEAVADAIVAIADQPMLYWPAPTDA-AMPVAARKRGIRVVGEIYPDLSYAPDGALVLQRAKHVTDTEFAAAQVRRYVETGKVLANDGSLLALDAESLCIHGDGPNATEVGAAVRAALAEIGCRIAPVM 516
            PE+ YA  +YQ GAL A LR HGM+LHHIKPHGA YS+L  +E L+EA A A++ +  QPM+Y+PAP +  ++   A   GI VV E+Y DLSY  +G LVL+RA    D +    ++ R++E G+V++ +G  +A+ A S+C+HGDGPNA ++  A+   LA     +AP++
Sbjct:   82 PEEVYADTLYQAGALSAVLRAHGMELHHIKPHGALYSMLSVSEPLSEAFARAVIEVCPQPMIYYPAPAEKHSVTRIAADMGIDVVPELYFDLSYDDEGGLVLKRANEGADLDDTKQRLARFLEHGEVVSVNGKAVAMTARSICLHGDGPNAVDLARAIGDGLAAADYTLAPLV 254          
BLAST of mRNA_P-wetherbeei_contig19735.1.1 vs. uniprot
Match: A0A2E8QZU6_9PROT (Uncharacterized protein (Fragment) n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E8QZU6_9PROT)

HSP 1 Score: 152 bits (383), Expect = 1.530e-42
Identity = 78/159 (49.06%), Postives = 109/159 (68.55%), Query Frame = 1
Query:    1 PEDAYAYVVYQTGALQAALRVHGMKLHHIKPHGAFYSVLRTNEALAEAVADAIVAIADQPMLYWPAPTD--AAMPVAARKRGIRVVGEIYPDLSYAPDGALVLQRAKHVTDTEFAAAQVRRYVETGKVLANDGSLLALDAESLCIHGDGPNATEVGAAV 471
            PE+ YA  +YQ GAL A L  H M+LHH+KPHGA YS+L  +E LAEA   A++ +  +PM+Y+PAP +  AA  +AA KRGI VV E+Y DLSY  +G LVL+RA    D E    ++  ++E G+VL+ +G+ +AL+A S+C+HGDGPNA ++   V
Sbjct:   82 PEEVYADTLYQVGALTAVLNAHDMELHHVKPHGALYSMLSKSEPLAEAFVQAVIELCPRPMIYYPAPAERHAATRIAA-KRGIDVVSELYFDLSYDDEGGLVLKRANEGADLEDTKRRLAHFLEKGEVLSVNGNPVALEARSVCLHGDGPNAVDLARTV 239          
BLAST of mRNA_P-wetherbeei_contig19735.1.1 vs. uniprot
Match: UPI001C00718A (5-oxoprolinase subunit PxpA n=1 Tax=Nocardioides sp. LMS-CY TaxID=2840457 RepID=UPI001C00718A)

HSP 1 Score: 149 bits (377), Expect = 9.850e-42
Identity = 76/153 (49.67%), Postives = 104/153 (67.97%), Query Frame = 1
Query:    4 EDAYAYVVYQTGALQAALRVHGMKLHHIKPHGAFYSVLRTNEALAEAVADAIVAIADQPMLYWPAPT-DAAMPVAARKRGIRVVGEIYPDLSYAPDGALVLQRAKHVTDTEFAAAQVRRYVETGKVLANDGSLLALDAESLCIHGDGPNATEV 459
            +DAYA VVYQ GA+QAALR  G  LHH+KPHG   S+   ++ +A+AV  AI  + D P++Y  +PT   A+  AAR  G+ VV E+YPDL Y+ DGA+++QR K  T    A AQ+RR++ +G V + +G  + L+AESLC+HGD PNA EV
Sbjct:   88 DDAYALVVYQVGAVQAALRAQGASLHHVKPHGTLMSMTMYDDHIADAVLGAIADVCDAPLVYATSPTAGTALERAARSHGVAVVREVYPDLEYSDDGAVIVQRRKLATHVPTAQAQLRRFLRSGVVRSVNGIEIPLEAESLCVHGDSPNALEV 240          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19735.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Z9UBS6_9GAMM5.230e-8978.36Uncharacterized protein n=3 Tax=Gammaproteobacteri... [more]
A0A3D5DG85_9GAMM7.520e-8273.26LamB/YcsF family protein n=1 Tax=Gammaproteobacter... [more]
A0A7Y3M6T2_9DELT1.540e-7566.475-oxoprolinase subunit PxpA n=1 Tax=Myxococcales b... [more]
A0A4R4XSF7_9ACTN2.360e-4950.58LamB/YcsF family protein n=1 Tax=Actinomadura sp. ... [more]
A0A1G6A8L8_9HYPH2.770e-4751.20UPF0271 protein n=1 Tax=Bauldia litoralis TaxID=66... [more]
UPI0003F661837.510e-4648.26LamB/YcsF family protein n=1 Tax=Pseudonocardia sp... [more]
A0A2E9M8Z4_9CHLR4.330e-4445.93Uncharacterized protein n=1 Tax=Dehalococcoidales ... [more]
A0A2S6R3D6_9PROT1.100e-4345.66Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A2E8QZU6_9PROT1.530e-4249.06Uncharacterized protein (Fragment) n=2 Tax=Rhodosp... [more]
UPI001C00718A9.850e-4249.675-oxoprolinase subunit PxpA n=1 Tax=Nocardioides s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19735contigP-wetherbeei_contig19735:3..524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog670487.Ocepr_1111
Preferred namelamB
PFAMsLamB_YcsF
Model size522
Max annot lvl1297|Deinococcus-Thermus
KEGG koko:K07160
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.24e-32
EggNOG OGsCOG1540@1|root,COG1540@2|Bacteria,1WIZ6@1297|Deinococcus-Thermus
DescriptionBelongs to the UPF0271 (lamB) family
Cds size522
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186180.2181542-CDS-P-wetherbeei_contig19735:2..5241683186180.2181542-CDS-P-wetherbeei_contig19735:2..524Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19735 3..524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19735.1.1prot_P-wetherbeei_contig19735.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19735 3..524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19735.1.1

>prot_P-wetherbeei_contig19735.1.1 ID=prot_P-wetherbeei_contig19735.1.1|Name=mRNA_P-wetherbeei_contig19735.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=174bp
PEDAYAYVVYQTGALQAALRVHGMKLHHIKPHGAFYSVLRTNEALAEAVA
DAIVAIADQPMLYWPAPTDAAMPVAARKRGIRVVGEIYPDLSYAPDGALV
LQRAKHVTDTEFAAAQVRRYVETGKVLANDGSLLALDAESLCIHGDGPNA
TEVGAAVRAALAEIGCRIAPVMA*
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mRNA from alignment at P-wetherbeei_contig19735:3..524+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19735.1.1 ID=mRNA_P-wetherbeei_contig19735.1.1|Name=mRNA_P-wetherbeei_contig19735.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig19735:3..524+ (Phaeothamnion wetherbeei SAG_119_79)
CCCGAGGACGCTTACGCCTACGTGGTCTATCAAACTGGCGCGCTGCAGGC GGCGCTGCGTGTGCACGGCATGAAGTTGCACCACATCAAGCCCCACGGTG CTTTCTATTCGGTATTGCGCACCAACGAGGCGCTGGCCGAGGCGGTGGCG GACGCCATCGTCGCGATTGCGGATCAGCCGATGCTTTATTGGCCGGCACC GACCGATGCGGCGATGCCGGTAGCGGCGCGCAAGCGCGGTATCCGCGTGG TTGGCGAGATTTATCCTGATTTGAGTTATGCGCCCGACGGTGCGCTGGTG TTGCAGCGGGCCAAGCATGTCACAGACACCGAATTTGCCGCGGCCCAGGT CAGGCGTTATGTCGAGACCGGCAAGGTGCTGGCCAATGATGGTTCGCTGC TGGCCCTGGATGCCGAGAGTCTGTGTATTCACGGCGATGGCCCGAATGCC ACCGAGGTCGGCGCGGCAGTGCGCGCGGCCTTGGCCGAGATCGGTTGCAG GATTGCGCCCGTGATGGCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19735:3..524+

>mRNA_P-wetherbeei_contig19735.1.1 ID=mRNA_P-wetherbeei_contig19735.1.1|Name=mRNA_P-wetherbeei_contig19735.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig19735:3..524+ (Phaeothamnion wetherbeei SAG_119_79)
CCCGAGGACGCTTACGCCTACGTGGTCTATCAAACTGGCGCGCTGCAGGC
GGCGCTGCGTGTGCACGGCATGAAGTTGCACCACATCAAGCCCCACGGTG
CTTTCTATTCGGTATTGCGCACCAACGAGGCGCTGGCCGAGGCGGTGGCG
GACGCCATCGTCGCGATTGCGGATCAGCCGATGCTTTATTGGCCGGCACC
GACCGATGCGGCGATGCCGGTAGCGGCGCGCAAGCGCGGTATCCGCGTGG
TTGGCGAGATTTATCCTGATTTGAGTTATGCGCCCGACGGTGCGCTGGTG
TTGCAGCGGGCCAAGCATGTCACAGACACCGAATTTGCCGCGGCCCAGGT
CAGGCGTTATGTCGAGACCGGCAAGGTGCTGGCCAATGATGGTTCGCTGC
TGGCCCTGGATGCCGAGAGTCTGTGTATTCACGGCGATGGCCCGAATGCC
ACCGAGGTCGGCGCGGCAGTGCGCGCGGCCTTGGCCGAGATCGGTTGCAG
GATTGCGCCCGTGATGGCCTGA
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