mRNA_P-wetherbeei_contig19728.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19728.1.1
Unique NamemRNA_P-wetherbeei_contig19728.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19728.1.1 vs. uniprot
Match: A0A7Y4XGJ2_HYPSQ (Recombinase family protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A7Y4XGJ2_HYPSQ)

HSP 1 Score: 213 bits (543), Expect = 3.080e-64
Identity = 105/142 (73.94%), Postives = 125/142 (88.03%), Query Frame = 1
Query:    1 MRAAIYARFSSDLQDERSITDQIALARRYIETRGLTLIQIYQDAAISGASTMNRPGLQNLLADALVGRFNIIVTESLDRLSRGQADIAALYERLTFLGIRIETLADGAVSEIHIGLKGTMAALFLKDLAQKTRRGQVGRKRA 426
            M AAIYARFSSDLQD RSITDQ+A+AR+Y +TRGL  I +Y+DAAISGAS +NRPGLQ L++DA  GR  +++TESLDRLSR QADIAALY+RL FLG+ IETLADG V+E+H+GLKGTM+ALFLKDLAQKTRRGQ+GR +A
Sbjct:    1 MLAAIYARFSSDLQDNRSITDQVAMARKYADTRGLKQIAVYEDAAISGASVINRPGLQRLMSDAAAGRIQVLITESLDRLSRNQADIAALYQRLDFLGVHIETLADGLVNEMHVGLKGTMSALFLKDLAQKTRRGQMGRVKA 142          
BLAST of mRNA_P-wetherbeei_contig19728.1.1 vs. uniprot
Match: UPI000B4C088D (recombinase family protein n=1 Tax=Rhodomicrobium TaxID=1068 RepID=UPI000B4C088D)

HSP 1 Score: 213 bits (542), Expect = 5.480e-64
Identity = 105/142 (73.94%), Postives = 124/142 (87.32%), Query Frame = 1
Query:    1 MRAAIYARFSSDLQDERSITDQIALARRYIETRGLTLIQIYQDAAISGASTMNRPGLQNLLADALVGRFNIIVTESLDRLSRGQADIAALYERLTFLGIRIETLADGAVSEIHIGLKGTMAALFLKDLAQKTRRGQVGRKRA 426
            M AAIYARFSSDLQD RS+TDQI+LA+ Y   R L ++ IY+DAA+SGA+ +NRPG+Q LL DA  GRF++++TES+DRLSRGQADIA LYERLTF G+RIETLADG +SEIHIGLKGTMAALFLKDLAQKTRRGQ+GR +A
Sbjct:    1 MHAAIYARFSSDLQDARSLTDQISLAKNYASARQLPVVSIYEDAALSGATIINRPGMQQLLEDAAAGRFDLLITESIDRLSRGQADIAWLYERLTFFGVRIETLADGQISEIHIGLKGTMAALFLKDLAQKTRRGQIGRVKA 142          
BLAST of mRNA_P-wetherbeei_contig19728.1.1 vs. uniprot
Match: UPI001FD9E09E (recombinase family protein n=1 Tax=Bradyrhizobium pachyrhizi TaxID=280333 RepID=UPI001FD9E09E)

HSP 1 Score: 162 bits (411), Expect = 2.690e-48
Identity = 77/138 (55.80%), Postives = 103/138 (74.64%), Query Frame = 1
Query:    1 MRAAIYARFSSDLQDERSITDQIALARRYIETRGLTLIQIYQDAAISGASTMNRPGLQNLLADALVGRFNIIVTESLDRLSRGQADIAALYERLTFLGIRIETLADGAVSEIHIGLKGTMAALFLKDLAQKTRRGQVG 414
            M+AAIYARFSSD Q +RSI DQ+AL R   E  GL+++ +Y D A+SGAST+NR G Q L+ DA   +F+++V E+LDR+SR Q D+A +++RL F G+ I T  DG   +IHIG+KG + +L+LKDLAQKTRRGQ G
Sbjct:   39 MKAAIYARFSSDKQTDRSIEDQVALCRAICEREGLSIVGVYDDRAVSGASTLNRIGWQRLMRDAKAAKFDVVVAEALDRISRDQEDLAGIHKRLRFAGVEIRTAQDGIAGDIHIGVKGLLGSLYLKDLAQKTRRGQAG 176          
BLAST of mRNA_P-wetherbeei_contig19728.1.1 vs. uniprot
Match: UPI001FFA4CA1 (recombinase family protein n=1 Tax=Bradyrhizobium sp. 30 TaxID=2782669 RepID=UPI001FFA4CA1)

HSP 1 Score: 162 bits (411), Expect = 3.770e-48
Identity = 79/138 (57.25%), Postives = 101/138 (73.19%), Query Frame = 1
Query:    1 MRAAIYARFSSDLQDERSITDQIALARRYIETRGLTLIQIYQDAAISGASTMNRPGLQNLLADALVGRFNIIVTESLDRLSRGQADIAALYERLTFLGIRIETLADGAVSEIHIGLKGTMAALFLKDLAQKTRRGQVG 414
            M+AAIYARFSSD Q +RSI DQ+AL R   E  GL +  +Y D AISGAST+NR G Q L+ DA  G+F ++V E+LDR+SR Q D+A +++RL F G+ I T  DG   +IHIG+KG + +L+LKDLAQKTRRGQ G
Sbjct:    1 MKAAIYARFSSDKQTDRSIEDQVALCRTICEREGLIVTAVYDDRAISGASTLNRLGWQRLMRDAKAGKFKVVVAEALDRISRDQEDLAGIHKRLQFAGVEIRTAQDGIAGDIHIGVKGLLGSLYLKDLAQKTRRGQAG 138          
BLAST of mRNA_P-wetherbeei_contig19728.1.1 vs. uniprot
Match: A0A849FTJ2_9RHOB (Recombinase family protein (Fragment) n=1 Tax=Litoreibacter sp. TaxID=1969459 RepID=A0A849FTJ2_9RHOB)

HSP 1 Score: 160 bits (404), Expect = 4.330e-47
Identity = 82/139 (58.99%), Postives = 104/139 (74.82%), Query Frame = 1
Query:    1 MRAAIYARFSSDLQDERSITDQIALARRYIETRGLTLIQIYQDAAISGASTMNRPGLQNLLADALVGRFNIIVTESLDRLSRGQADIAALYERLTFLGIRIETLADGAVSEIHIGLKGTMAALFLKDLAQKTRRGQVGR 417
            M+A IYAR+S+DLQ+  SI DQ+   R  I   G T++++Y DAAISG S   R GLQ LL DA + RF+ +V+E+LDRLSR Q DIA +Y+RLT+  + + TLA+G V+E+HIGLKGTM ALFLKDLAQKTRRG  GR
Sbjct:    1 MKAVIYARYSTDLQNPASIADQVRSCRERIIAEGGTVVEVYSDAAISGGSMSARDGLQALLEDARLSRFDTVVSEALDRLSRDQEDIAGIYKRLTYADVTLTTLAEGEVNELHIGLKGTMNALFLKDLAQKTRRGLRGR 139          
BLAST of mRNA_P-wetherbeei_contig19728.1.1 vs. uniprot
Match: A0A3D2F964_9RHOB (Resolvase (Fragment) n=1 Tax=Sulfitobacter sp. TaxID=1903071 RepID=A0A3D2F964_9RHOB)

HSP 1 Score: 163 bits (413), Expect = 4.360e-47
Identity = 81/139 (58.27%), Postives = 110/139 (79.14%), Query Frame = 1
Query:    1 MRAAIYARFSSDLQDERSITDQIALARRYIETRGLTLIQIYQDAAISGASTMNRPGLQNLLADALVGRFNIIVTESLDRLSRGQADIAALYERLTFLGIRIETLADGAVSEIHIGLKGTMAALFLKDLAQKTRRGQVGR 417
            +RAA+YARFS+DLQ + SI DQ+   R +   +G+ ++++Y D AISGAS M R G+Q +L DA VGRF+I+V+E++DRLSR Q+DIAA++ER  F GI IETL++G +SE+HIG+KGTM A+FLKDL  KTRRG +GR
Sbjct:    5 LRAALYARFSTDLQRDASIEDQLRSCRAFATKQGIEVVEVYSDRAISGASLM-RSGMQKMLRDAQVGRFDIVVSEAMDRLSRSQSDIAAIFERFQFRGIMIETLSEGLLSELHIGMKGTMNAIFLKDLGIKTRRGLMGR 142          
BLAST of mRNA_P-wetherbeei_contig19728.1.1 vs. uniprot
Match: UPI001FCCB275 (recombinase family protein n=1 Tax=Paracoccus versutus TaxID=34007 RepID=UPI001FCCB275)

HSP 1 Score: 161 bits (407), Expect = 1.370e-46
Identity = 85/139 (61.15%), Postives = 103/139 (74.10%), Query Frame = 1
Query:    1 MRAAIYARFSSDLQDERSITDQIALARRYIETRGLTLIQIYQDAAISGASTMNRPGLQNLLADALVGRFNIIVTESLDRLSRGQADIAALYERLTFLGIRIETLADGAVSEIHIGLKGTMAALFLKDLAQKTRRGQVGR 417
            +RA IYAR+SSDLQ   SI DQI L R      G  ++  Y+DAA SGAS M RPG+Q L  DA   RF+++++E+LDRLSR QADIAALY+ LTF G+ IETLA+G + E+HIGLKGTM ALF+KDLA KTRRG  GR
Sbjct:    3 LRAVIYARYSSDLQSASSIEDQIRLCRERAARAGWQIVGSYEDAATSGASLM-RPGIQRLQQDARERRFDVVISEALDRLSRNQADIAALYQNLTFAGVAIETLAEGRIDEMHIGLKGTMNALFIKDLAAKTRRGLRGR 140          
BLAST of mRNA_P-wetherbeei_contig19728.1.1 vs. uniprot
Match: UPI000AA51525 (recombinase family protein n=1 Tax=Agrobacterium vitis TaxID=373 RepID=UPI000AA51525)

HSP 1 Score: 159 bits (403), Expect = 1.410e-46
Identity = 83/139 (59.71%), Postives = 104/139 (74.82%), Query Frame = 1
Query:    1 MRAAIYARFSSDLQDERSITDQIALARRYIETRGLTLIQIYQDAAISGASTMNRPGLQNLLADALVGRFNIIVTESLDRLSRGQADIAALYERLTFLGIRIETLADGAVSEIHIGLKGTMAALFLKDLAQKTRRGQVGR 417
            M+ A+YAR+SSD Q + SI DQ+ + R   E  G T++  Y D AISGAS + RPG+Q L+AD L  RF++I+TESLDRLSR Q DIA LY+R+ F G+ I TL++G VSE+HIGLKGTM AL+LKDLA KTRRG  GR
Sbjct:    1 MKVALYARYSSDNQRDASIEDQLRICRTRAEREGWTIVDSYTDRAISGASLI-RPGIQELIADGLKRRFDVILTESLDRLSRDQEDIAGLYKRMRFAGVSIVTLSEGEVSELHIGLKGTMGALYLKDLADKTRRGLRGR 138          
BLAST of mRNA_P-wetherbeei_contig19728.1.1 vs. uniprot
Match: UPI000B1A71FE (recombinase family protein n=1 Tax=Mesorhizobium sp. YR577 TaxID=1884373 RepID=UPI000B1A71FE)

HSP 1 Score: 159 bits (401), Expect = 1.620e-46
Identity = 81/138 (58.70%), Postives = 101/138 (73.19%), Query Frame = 1
Query:    4 RAAIYARFSSDLQDERSITDQIALARRYIETRGLTLIQIYQDAAISGASTMNRPGLQNLLADALVGRFNIIVTESLDRLSRGQADIAALYERLTFLGIRIETLADGAVSEIHIGLKGTMAALFLKDLAQKTRRGQVGR 417
            R A+YAR+SSD Q E SI DQ  L R +        +  Y+DAAISGAST+ RPG+Q L+ DA  G FNI++ E+LDR+SR QAD+A LY++L F G+ I TLA+G +SE+H+GLKGTM ALFLKDLA KTRRG  GR
Sbjct:    3 RVALYARYSSDNQSEASIEDQFRLCRDHARRERWETVGFYEDAAISGASTILRPGIQRLMRDAQHGEFNILLAEALDRISRDQADVAPLYKQLKFAGVGIVTLAEGEISELHVGLKGTMNALFLKDLAMKTRRGLRGR 140          
BLAST of mRNA_P-wetherbeei_contig19728.1.1 vs. uniprot
Match: UPI001BC09671 (Recombinase family protein n=1 Tax=Roseovarius sp. TaxID=1486281 RepID=UPI001BC09671)

HSP 1 Score: 167 bits (423), Expect = 2.010e-46
Identity = 86/139 (61.87%), Postives = 105/139 (75.54%), Query Frame = 1
Query:    1 MRAAIYARFSSDLQDERSITDQIALARRYIETRGLTLIQIYQDAAISGASTMNRPGLQNLLADALVGRFNIIVTESLDRLSRGQADIAALYERLTFLGIRIETLADGAVSEIHIGLKGTMAALFLKDLAQKTRRGQVGR 417
            MRAAIYAR+S+DLQ+  SI DQI +    +   G T +QIY DAAISG S   RPGLQ LLADA  GRF+ ++ E+LDR+SR Q DIA +Y+RL +  +++ TLA+G VSE+HIGLKGTM ALFLKDLAQKTRRG  GR
Sbjct:    1 MRAAIYARYSTDLQNPASIEDQIRICEDQVRATGGTTVQIYTDAAISGGSMKTRPGLQALLADASQGRFDTVIAEALDRVSRDQEDIAGIYKRLQYADVQLVTLAEGVVSELHIGLKGTMNALFLKDLAQKTRRGLRGR 139          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19728.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y4XGJ2_HYPSQ3.080e-6473.94Recombinase family protein n=1 Tax=Hyphomicrobium ... [more]
UPI000B4C088D5.480e-6473.94recombinase family protein n=1 Tax=Rhodomicrobium ... [more]
UPI001FD9E09E2.690e-4855.80recombinase family protein n=1 Tax=Bradyrhizobium ... [more]
UPI001FFA4CA13.770e-4857.25recombinase family protein n=1 Tax=Bradyrhizobium ... [more]
A0A849FTJ2_9RHOB4.330e-4758.99Recombinase family protein (Fragment) n=1 Tax=Lito... [more]
A0A3D2F964_9RHOB4.360e-4758.27Resolvase (Fragment) n=1 Tax=Sulfitobacter sp. Tax... [more]
UPI001FCCB2751.370e-4661.15recombinase family protein n=1 Tax=Paracoccus vers... [more]
UPI000AA515251.410e-4659.71recombinase family protein n=1 Tax=Agrobacterium v... [more]
UPI000B1A71FE1.620e-4658.70recombinase family protein n=1 Tax=Mesorhizobium s... [more]
UPI001BC096712.010e-4661.87Recombinase family protein n=1 Tax=Roseovarius sp.... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19728contigP-wetherbeei_contig19728:786..1238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog582899.Hden_3032
PFAMsRecombinase,Resolvase,Zn_ribbon_recom
Model size453
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K06400
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.44e-46
EggNOG OGsCOG1961@1|root,COG1961@2|Bacteria,1MV0C@1224|Proteobacteria,2TTJT@28211|Alphaproteobacteria
DescriptionCOG1961 Site-specific recombinases, DNA invertase Pin homologs
Cds size453
COG categoryL
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186179.9204648-CDS-P-wetherbeei_contig19728:785..12381683186179.9204648-CDS-P-wetherbeei_contig19728:785..1238Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19728 786..1238 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19728.1.1prot_P-wetherbeei_contig19728.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19728 786..1238 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19728.1.1

>prot_P-wetherbeei_contig19728.1.1 ID=prot_P-wetherbeei_contig19728.1.1|Name=mRNA_P-wetherbeei_contig19728.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=151bp
MRAAIYARFSSDLQDERSITDQIALARRYIETRGLTLIQIYQDAAISGAS
TMNRPGLQNLLADALVGRFNIIVTESLDRLSRGQADIAALYERLTFLGIR
IETLADGAVSEIHIGLKGTMAALFLKDLAQKTRRGQVGRKRARCPTLTAV
*
back to top

mRNA from alignment at P-wetherbeei_contig19728:786..1238+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19728.1.1 ID=mRNA_P-wetherbeei_contig19728.1.1|Name=mRNA_P-wetherbeei_contig19728.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig19728:786..1238+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTGCGGCAATCTATGCGCGGTTTTCCAGCGACCTCCAGGACGAACG ATCGATCACCGATCAGATCGCGCTCGCGCGCAGGTACATCGAGACCCGCG GGCTGACGCTGATTCAGATTTATCAGGACGCTGCTATCTCCGGCGCGTCG ACCATGAACAGGCCGGGACTGCAAAACCTGCTGGCCGACGCACTCGTCGG CCGATTCAACATAATCGTCACGGAAAGCCTCGACCGACTGTCGCGGGGCC AAGCCGATATCGCAGCCCTCTACGAGCGGCTGACGTTCCTCGGCATTCGC ATCGAGACCTTGGCCGACGGTGCCGTCTCCGAAATCCACATCGGGCTGAA GGGCACGATGGCCGCCCTCTTCCTCAAGGATCTTGCGCAGAAGACACGTC GTGGTCAGGTTGGACGTAAGCGGGCCAGGTGCCCCACGTTGACGGCGGTT TAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig19728:786..1238+

>mRNA_P-wetherbeei_contig19728.1.1 ID=mRNA_P-wetherbeei_contig19728.1.1|Name=mRNA_P-wetherbeei_contig19728.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig19728:786..1238+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTGCGGCAATCTATGCGCGGTTTTCCAGCGACCTCCAGGACGAACG
ATCGATCACCGATCAGATCGCGCTCGCGCGCAGGTACATCGAGACCCGCG
GGCTGACGCTGATTCAGATTTATCAGGACGCTGCTATCTCCGGCGCGTCG
ACCATGAACAGGCCGGGACTGCAAAACCTGCTGGCCGACGCACTCGTCGG
CCGATTCAACATAATCGTCACGGAAAGCCTCGACCGACTGTCGCGGGGCC
AAGCCGATATCGCAGCCCTCTACGAGCGGCTGACGTTCCTCGGCATTCGC
ATCGAGACCTTGGCCGACGGTGCCGTCTCCGAAATCCACATCGGGCTGAA
GGGCACGATGGCCGCCCTCTTCCTCAAGGATCTTGCGCAGAAGACACGTC
GTGGTCAGGTTGGACGTAAGCGGGCCAGGTGCCCCACGTTGACGGCGGTT
TAG
back to top