mRNA_P-wetherbeei_contig19300.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19300.2.1
Unique NamemRNA_P-wetherbeei_contig19300.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19300.2.1 vs. uniprot
Match: A0A6I3EX71_9ACTN (Urease accessory protein UreF n=2 Tax=root TaxID=1 RepID=A0A6I3EX71_9ACTN)

HSP 1 Score: 149 bits (377), Expect = 4.360e-43
Identity = 82/122 (67.21%), Postives = 94/122 (77.05%), Query Frame = 1
Query:    1 AERAWPSAAYAALRSVQPDGPMQPLVLGATAAAAGLDPEEAALCSLHHLLGAITTAAVRLIGLDPFSVQALAASLAPRLDALATDAALAARLPVSELPSTTSLLADALAEHHATWEVRLFAS 366
            AERAWPS     LRS+  +GPMQ + LGATAAAAGL P +AALCSLHHL+GA+TTAAVRL+GLDPF VQA+AA+  P L+ LA +A   A  P   LP+  SLLAD LAEHHATWEVRLFAS
Sbjct:  100 AERAWPSLPARELRSLHWEGPMQSVALGATAAAAGLTPADAALCSLHHLVGAVTTAAVRLLGLDPFDVQAIAANRTPLLERLAAEATARALGPADALPANNSLLADILAEHHATWEVRLFAS 221          
BLAST of mRNA_P-wetherbeei_contig19300.2.1 vs. uniprot
Match: UPI000493E09C (urease accessory protein UreF n=1 Tax=Streptomyces xiaopingdaonensis TaxID=1565415 RepID=UPI000493E09C)

HSP 1 Score: 111 bits (277), Expect = 5.440e-28
Identity = 69/122 (56.56%), Postives = 79/122 (64.75%), Query Frame = 1
Query:    1 AERAWPSAAYAALRSVQPDGPMQPLVLGATAAAAGLDPEEAALCSLHHLLGAITTAAVRLIGLDPFSVQALAASLAPRLDALATDAALAARLPVSELPSTTSLLADALAEHHATWEVRLFAS 366
            A  A P     AL +   +GP QPLVLGATA A GL P  AA  +LH       TAAVRL+GLDPF+V AL A LAP+LDAL+  AA     P SELP++ + L D  AEHHATWEVRLFAS
Sbjct:  103 ARAASPDPLLDALTTAWSEGPHQPLVLGATAQAFGLTPHAAAAAALHEAATGPATAAVRLLGLDPFAVHALLAHLAPQLDALSHQAAALVDEPPSELPASGAPLLDISAEHHATWEVRLFAS 224          
BLAST of mRNA_P-wetherbeei_contig19300.2.1 vs. uniprot
Match: UPI001951D22F (urease accessory protein UreF n=4 Tax=Micromonospora TaxID=1873 RepID=UPI001951D22F)

HSP 1 Score: 107 bits (268), Expect = 1.300e-26
Identity = 66/120 (55.00%), Postives = 78/120 (65.00%), Query Frame = 1
Query:    7 RAWPSAAYAALRSVQPDGPMQPLVLGATAAAAGLDPEEAALCSLHHLLGAITTAAVRLIGLDPFSVQALAASLAPRLDALATDAALAARLPVSELPSTTSLLADALAEHHATWEVRLFAS 366
            R WP+A +  L +V PDGP QPLVLG   AAAGLDP + A  + H  +    +AAVRL+GLDP+ VQAL   LA   DA+A  AA AA  P   LP+  + LAD  AE HATWEVRLFAS
Sbjct:  109 RIWPAATFDDLPTV-PDGPHQPLVLGLVGAAAGLDPGQVATVAAHATVTGSASAAVRLLGLDPYQVQALLVRLAGACDAVAARAARAAEEPPERLPAAAAPLADIHAEAHATWEVRLFAS 227          
BLAST of mRNA_P-wetherbeei_contig19300.2.1 vs. uniprot
Match: UPI0017B3A250 (Urease accessory protein UreF n=1 Tax=Hamadaea sp. TaxID=2024425 RepID=UPI0017B3A250)

HSP 1 Score: 107 bits (267), Expect = 1.520e-26
Identity = 67/119 (56.30%), Postives = 82/119 (68.91%), Query Frame = 1
Query:   13 WPSAAYAALRSVQPDGPMQPLVLGATAAAAGLDPEEAALCSLHHLLGAITTAAVRLIGLDPFSVQALAASLAPRLDALATDAA-LAARLPVSELPSTTSLLADALAEHHATWEVRLFAS 366
            WPS  Y  L    PDG  QP+ LG TAAAAGLDP +AAL + + +L    +AAVRL+GLDP+ VQAL + LA   D ++  AA +AA  P S+LP+TT+ LAD  AE HATWEVRLFAS
Sbjct:  102 WPSPLYDQLPP-HPDGCHQPIALGLTAAAAGLDPHQAALVAAYAVLTGPASAAVRLLGLDPYQVQALLSRLAATCDEISAGAAAVAATAPPSDLPATTAPLADIHAETHATWEVRLFAS 219          
BLAST of mRNA_P-wetherbeei_contig19300.2.1 vs. uniprot
Match: UPI0004CB2D5C (urease accessory protein UreF n=2 Tax=Streptomyces TaxID=1883 RepID=UPI0004CB2D5C)

HSP 1 Score: 105 bits (263), Expect = 6.310e-26
Identity = 61/122 (50.00%), Postives = 76/122 (62.30%), Query Frame = 1
Query:    1 AERAWPSAAYAALRSVQPDGPMQPLVLGATAAAAGLDPEEAALCSLHHLLGAITTAAVRLIGLDPFSVQALAASLAPRLDALATDAALAARLPVSELPSTTSLLADALAEHHATWEVRLFAS 366
            A   WPSA   AL ++ P G  QP+VLG TA AAGLD E+AA C  +  +G   TA VRL+GLDP+   A+ A L P +D +A  AA AAR  +  LP+ ++ L D  AE HA W VRLFAS
Sbjct:  100 ARATWPSARLDALAAMYPRGAHQPVVLGTTALAAGLDAEDAAYCVAYETVGGPATAVVRLLGLDPYQATAVLARLVPEMDQVAERAAAAARQGIDALPAASAPLLDLTAEQHAAWPVRLFAS 221          
BLAST of mRNA_P-wetherbeei_contig19300.2.1 vs. uniprot
Match: UPI001991F038 (urease accessory protein UreF n=1 Tax=Streptomyces mashuensis TaxID=33904 RepID=UPI001991F038)

HSP 1 Score: 106 bits (264), Expect = 6.450e-26
Identity = 67/126 (53.17%), Postives = 79/126 (62.70%), Query Frame = 1
Query:    1 AERAWPSAAYAALRSVQPDGPMQPLVLGATAAAAGLDPEEAALCSLHHLLGAITTAAVRLIGLDPFSVQALAASLAPRLDALATDAALAARLPVSE----LPSTTSLLADALAEHHATWEVRLFAS 366
            A  AWPSAA  AL + +P G  QP+VLG TA AAGL P +AA  + +  +    TAAVRL+GLDPF   A+ A LAP LD +A  AA AAR  V E    LPS ++ L D  AE HA W VRLFAS
Sbjct:  112 ARAAWPSAALDALAAARPRGAHQPVVLGLTARAAGLGPADAAYAAAYECVSGPATAAVRLLGLDPFDATAVLARLAPELDQVAARAARAARRAVDEGPDALPSASAPLLDITAEQHAAWPVRLFAS 237          
BLAST of mRNA_P-wetherbeei_contig19300.2.1 vs. uniprot
Match: A0A3N6FLQ8_9ACTN (Urease accessory protein UreF n=10 Tax=Streptomyces TaxID=1883 RepID=A0A3N6FLQ8_9ACTN)

HSP 1 Score: 105 bits (262), Expect = 8.910e-26
Identity = 62/122 (50.82%), Postives = 77/122 (63.11%), Query Frame = 1
Query:    1 AERAWPSAAYAALRSVQPDGPMQPLVLGATAAAAGLDPEEAALCSLHHLLGAITTAAVRLIGLDPFSVQALAASLAPRLDALATDAALAARLPVSELPSTTSLLADALAEHHATWEVRLFAS 366
            A   WPS   AAL + +P G  QP+VLG TA AAGL+PE+AA C  +  +    TA VRL+ LDPF   A+ A LAP LD +A +AA AAR  +  LP+ ++ L D  AE HA W VRLFAS
Sbjct:  100 ARSTWPSPELAALAAARPRGAHQPVVLGLTARAAGLEPEDAAHCVAYEAVSGPATAVVRLLSLDPFEATAVLARLAPALDRVAEEAAAAARDGIDALPAASAPLLDITAEAHAAWPVRLFAS 221          
BLAST of mRNA_P-wetherbeei_contig19300.2.1 vs. uniprot
Match: A0A8J3MJC1_9ACTN (Urease accessory protein UreF n=2 Tax=unclassified Catellatospora TaxID=2645785 RepID=A0A8J3MJC1_9ACTN)

HSP 1 Score: 105 bits (261), Expect = 1.260e-25
Identity = 65/118 (55.08%), Postives = 77/118 (65.25%), Query Frame = 1
Query:   13 WPSAAYAALRSVQPDGPMQPLVLGATAAAAGLDPEEAALCSLHHLLGAITTAAVRLIGLDPFSVQALAASLAPRLDALATDAALAARLPVSELPSTTSLLADALAEHHATWEVRLFAS 366
            WPS  YA L    PDGP Q + LG  AAAAGL  E+AA  ++ H +    +AAVRL+GLDP+ VQ   A LAP  DA+A  AA  A  P +ELPS ++ LAD  AE HATWEVRLFAS
Sbjct:  105 WPSELYATLPP-HPDGPHQAITLGVVAAAAGLSAEQAAQIAVFHTVTGPASAAVRLLGLDPYQVQRQLALLAPVCDAVAAAAAALAHKPPAELPSHSAPLADISAELHATWEVRLFAS 221          
BLAST of mRNA_P-wetherbeei_contig19300.2.1 vs. uniprot
Match: UPI0011EBCDFB (urease accessory protein UreF n=2 Tax=Streptomyces TaxID=1883 RepID=UPI0011EBCDFB)

HSP 1 Score: 104 bits (259), Expect = 2.680e-25
Identity = 63/122 (51.64%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    1 AERAWPSAAYAALRSVQPDGPMQPLVLGATAAAAGLDPEEAALCSLHHLLGAITTAAVRLIGLDPFSVQALAASLAPRLDALATDAALAARLPVSELPSTTSLLADALAEHHATWEVRLFAS 366
            A   WPS    AL    P G  QP+VLGATA AAGL PEEAA C+++  +    TAAVRL+ LDPF   A+ A LAP +D +A  A  AAR  V  LP+ ++ L D  AE HA W VRLFAS
Sbjct:  103 ARATWPSPELDALARAYPRGAHQPVVLGATARAAGLGPEEAAHCAVYETVSGPATAAVRLLSLDPFQATAVLARLAPDMDDVAARATAAAREGVDALPAASAPLLDITAEQHAAWPVRLFAS 224          
BLAST of mRNA_P-wetherbeei_contig19300.2.1 vs. uniprot
Match: A0A6B2WWT3_9ACTN (Urease accessory protein UreF (Fragment) n=2 Tax=unclassified Streptomyces TaxID=2593676 RepID=A0A6B2WWT3_9ACTN)

HSP 1 Score: 101 bits (251), Expect = 3.360e-25
Identity = 65/123 (52.85%), Postives = 80/123 (65.04%), Query Frame = 1
Query:   10 AWPSAAYAALRSVQPDGPMQPLVLGATAAAAGLDPEEAALCSLHHLLGAITTAAVRLIGLDPFSVQALAASLAPRLDALATDAALAARLPVSE----LPSTTSLLADALAEHHATWEVRLFAS 366
            AWP+A    L + +P G  QP+VLG TA AAGL P +AA  + +  +   TTAAVRL+GLDPFSV A+ A LAP LDA+A  AALAA    +E    LP+ ++ L D  AE HA W VRLFAS
Sbjct:    3 AWPAAELDRLAAARPRGAHQPIVLGVTARAAGLTPLDAAHVAAYESVTGPTTAAVRLLGLDPFSVGAVLARLAPELDAVAERAALAAARAATEGLQALPAASAPLLDIHAEQHAAWPVRLFAS 125          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19300.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I3EX71_9ACTN4.360e-4367.21Urease accessory protein UreF n=2 Tax=root TaxID=1... [more]
UPI000493E09C5.440e-2856.56urease accessory protein UreF n=1 Tax=Streptomyces... [more]
UPI001951D22F1.300e-2655.00urease accessory protein UreF n=4 Tax=Micromonospo... [more]
UPI0017B3A2501.520e-2656.30Urease accessory protein UreF n=1 Tax=Hamadaea sp.... [more]
UPI0004CB2D5C6.310e-2650.00urease accessory protein UreF n=2 Tax=Streptomyces... [more]
UPI001991F0386.450e-2653.17urease accessory protein UreF n=1 Tax=Streptomyces... [more]
A0A3N6FLQ8_9ACTN8.910e-2650.82Urease accessory protein UreF n=10 Tax=Streptomyce... [more]
A0A8J3MJC1_9ACTN1.260e-2555.08Urease accessory protein UreF n=2 Tax=unclassified... [more]
UPI0011EBCDFB2.680e-2551.64urease accessory protein UreF n=2 Tax=Streptomyces... [more]
A0A6B2WWT3_9ACTN3.360e-2552.85Urease accessory protein UreF (Fragment) n=2 Tax=u... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19300contigP-wetherbeei_contig19300:927..1295 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog862751.SACTE_0645
Preferred nameureF
PFAMsUreF
Model size369
Max annot lvl201174|Actinobacteria
KEGG koko:K03188
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.91e-26
EggNOG OGsCOG0830@1|root,COG0830@2|Bacteria,2GN66@201174|Actinobacteria
DescriptionRequired for maturation of urease via the functional incorporation of the urease nickel metallocenter
Cds size369
COG categoryO
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186169.1873167-CDS-P-wetherbeei_contig19300:926..12951683186169.1873167-CDS-P-wetherbeei_contig19300:926..1295Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19300 927..1295 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19300.2.1prot_P-wetherbeei_contig19300.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19300 927..1295 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19300.2.1

>prot_P-wetherbeei_contig19300.2.1 ID=prot_P-wetherbeei_contig19300.2.1|Name=mRNA_P-wetherbeei_contig19300.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=123bp
AERAWPSAAYAALRSVQPDGPMQPLVLGATAAAAGLDPEEAALCSLHHLL
GAITTAAVRLIGLDPFSVQALAASLAPRLDALATDAALAARLPVSELPST
TSLLADALAEHHATWEVRLFAS*
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mRNA from alignment at P-wetherbeei_contig19300:927..1295-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19300.2.1 ID=mRNA_P-wetherbeei_contig19300.2.1|Name=mRNA_P-wetherbeei_contig19300.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=369bp|location=Sequence derived from alignment at P-wetherbeei_contig19300:927..1295- (Phaeothamnion wetherbeei SAG_119_79)
GCCGAGCGGGCCTGGCCCTCCGCCGCGTACGCCGCGCTGCGGTCGGTGCA ACCCGACGGCCCGATGCAACCGCTCGTGCTCGGGGCCACCGCCGCTGCCG CCGGGCTCGACCCGGAGGAGGCGGCACTGTGCTCGCTCCACCACCTGCTC GGGGCGATCACCACCGCGGCCGTGCGGCTGATCGGGCTCGACCCGTTCTC CGTGCAGGCGTTGGCCGCATCGCTCGCACCACGACTCGATGCGCTCGCCA CCGACGCCGCCCTCGCTGCGCGGTTGCCGGTGTCGGAACTGCCGTCGACC ACCAGCCTGCTCGCCGACGCGCTCGCCGAGCATCACGCCACTTGGGAGGT GAGGCTCTTTGCCTCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19300:927..1295-

>mRNA_P-wetherbeei_contig19300.2.1 ID=mRNA_P-wetherbeei_contig19300.2.1|Name=mRNA_P-wetherbeei_contig19300.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=369bp|location=Sequence derived from alignment at P-wetherbeei_contig19300:927..1295- (Phaeothamnion wetherbeei SAG_119_79)
GCCGAGCGGGCCTGGCCCTCCGCCGCGTACGCCGCGCTGCGGTCGGTGCA
ACCCGACGGCCCGATGCAACCGCTCGTGCTCGGGGCCACCGCCGCTGCCG
CCGGGCTCGACCCGGAGGAGGCGGCACTGTGCTCGCTCCACCACCTGCTC
GGGGCGATCACCACCGCGGCCGTGCGGCTGATCGGGCTCGACCCGTTCTC
CGTGCAGGCGTTGGCCGCATCGCTCGCACCACGACTCGATGCGCTCGCCA
CCGACGCCGCCCTCGCTGCGCGGTTGCCGGTGTCGGAACTGCCGTCGACC
ACCAGCCTGCTCGCCGACGCGCTCGCCGAGCATCACGCCACTTGGGAGGT
GAGGCTCTTTGCCTCCTGA
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