mRNA_P-wetherbeei_contig19072.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19072.1.1
Unique NamemRNA_P-wetherbeei_contig19072.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19072.1.1 vs. uniprot
Match: A0A835Z7W2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7W2_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 5.280e-15
Identity = 50/145 (34.48%), Postives = 76/145 (52.41%), Query Frame = 1
Query:   13 QVIIQDNTFGTNRFGLPFFVIVCIDGDARTRVICQGFLRKEDTAAFTWAFENYVRWCCDAGSCRPGVILTDDAKAAAAGIKKTMPITKHFLCSWHLYKNLKEQTDKHLRGDADLLRACRAAFRKAEYAATEEEFGGCWDDLMVSM 447
             VI QD T GTN++GL   +IV ++GD++TR+ CQ  L +EDT AF+W F +YV+     G   P V  TD   + A G+K      ++  C +  YK  +E   +H+          R+  ++A  A TE  F G W  L+ ++
Sbjct:  273 DVIQQDCTLGTNKYGLALSIIVGVNGDSKTRMFCQALLEREDTEAFSWFFVHYVKMV---GGHYPFVCFTDRLSSQAIGVK-AQACERNQQCKYAGYKLYQEA--RHIAAQEMF----RSLMQRASRAPTEASFQGAWKGLLDAL 407          
BLAST of mRNA_P-wetherbeei_contig19072.1.1 vs. uniprot
Match: A0A015IJG7_RHIIW (SWIM-type domain-containing protein n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015IJG7_RHIIW)

HSP 1 Score: 76.3 bits (186), Expect = 6.310e-12
Identity = 36/114 (31.58%), Postives = 62/114 (54.39%), Query Frame = 1
Query:   13 QVIIQDNTFGTNRFGLPFFVIVCIDGDARTRVICQGFLRKEDTAAFTWAFENYVRWCCDAGSCRPGVILTDDAKAAAAGIKKTMPITKHFLCSWHLYKNLKEQTDKHLRGDADL 354
             VI+ D T  TNR+ +   + V +D + +TR++ Q   + E+ A F W  +  ++    + +  P V+ TD   A  A ++   P T+H LC +HL++N+K++    LRGD  L
Sbjct:  229 DVIVYDTTSKTNRYEMVLSLFVAVDNNYKTRIVAQALTKYENQADFNWILQCTLQ---ASNNLSPRVLFTDSDLAIIAAVQVVYPQTRHLLCIYHLFENVKKKAKSKLRGDMAL 339          
BLAST of mRNA_P-wetherbeei_contig19072.1.1 vs. uniprot
Match: A0A444XRF2_ARAHY (Protein FAR1-RELATED SEQUENCE n=1 Tax=Arachis hypogaea TaxID=3818 RepID=A0A444XRF2_ARAHY)

HSP 1 Score: 71.2 bits (173), Expect = 1.200e-10
Identity = 36/108 (33.33%), Postives = 60/108 (55.56%), Query Frame = 1
Query:    1 ESCGQVIIQDNTFGTNRFGLPFFVIVCIDGDARTRVICQGFLRKEDTAAFTWAFENYVRWCCDAGSCRPGV-ILTDDAKAAAAGIKKTMPITKHFLCSWHLYKNLKEQ 321
            E  G V+  D T+ TNR+ +PF   V ++   ++ ++    L  E+ + F W F+ ++R   D    +P + ILTD  KA    IKK++P+T+H  C WH+ K + E+
Sbjct:   35 EHFGDVMSFDTTYLTNRYDMPFASFVGVNHHGQSLLLGCAILSCEEESYFLWLFDCWIRCIGD----KPSIGILTDQCKAMRNAIKKSLPMTQHRWCIWHILKKISEK 138          
BLAST of mRNA_P-wetherbeei_contig19072.1.1 vs. uniprot
Match: UPI0019D5D764 (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D5D764)

HSP 1 Score: 71.6 bits (174), Expect = 2.230e-10
Identity = 39/119 (32.77%), Postives = 56/119 (47.06%), Query Frame = 1
Query:    1 ESCGQVIIQDNTFGTNRFGLPFFVIVCIDGDARTRVICQGFLRKEDTAAFTWAFENYVRWCCDAGSCRPGVILTDDAKAAAAGIKKTMPITKHFLCSWHLYKNLKEQ-----TDKHLRG 342
            E  G  I  D TF TN++ +PF +IV I+G A+  +     L  +    F W F+ +V         +P +I+TD   A    I   MP   H LC WH+ KN+ E+     + KH  G
Sbjct:  417 ELYGDFISFDTTFSTNKYNMPFALIVGINGHAKNVIFGCALLEDQTAETFEWVFKTFVETM---NGKKPKIIMTDQDAAMKKAIADFMPDVIHRLCIWHIMKNILEKCGSFMSQKHREG 532          
BLAST of mRNA_P-wetherbeei_contig19072.1.1 vs. uniprot
Match: UPI00098ADE8C (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI00098ADE8C)

HSP 1 Score: 70.9 bits (172), Expect = 3.150e-10
Identity = 43/139 (30.94%), Postives = 65/139 (46.76%), Query Frame = 1
Query:   10 GQVIIQDNTFGTNRFGLPFFVIVCIDGDARTRVICQGFLRKEDTAAFTWAFENYVRWCCDAGSCRPGVILTDDAKAAAAGIKKTMPITKHFLCSWHLYKNLKEQTDKHLRGDADLLRACRAAFRKAEYAATEEEFGGCW 426
            G V++ DNT+  NR+G+PF   V ++    T V     +  E  A + W    +++  C     RP  ++TD   A    I+K +    H LCSWH+ KN++    KHL   +  L+  RA      YA T + F   W
Sbjct:  285 GDVVVFDNTYKMNRYGMPFIPFVGLNNHRCTTVFACAIVSDETEATYVWLLNTFLKANCQK---RPKSVITDGDAAMIRAIRKVLSDVWHRLCSWHIEKNMQ----KHLNHKS--LKEFRALLY---YATTYKVFEERW 411          
BLAST of mRNA_P-wetherbeei_contig19072.1.1 vs. uniprot
Match: UPI0019D552B3 (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D552B3)

HSP 1 Score: 70.9 bits (172), Expect = 3.660e-10
Identity = 38/116 (32.76%), Postives = 53/116 (45.69%), Query Frame = 1
Query:   10 GQVIIQDNTFGTNRFGLPFFVIVCIDGDARTRVICQGFLRKEDTAAFTWAFENYVRWCCDAGSCRPGVILTDDAKAAAAGIKKTMPITKHFLCSWHLYKNLKEQ-----TDKHLRG 342
            G  I  D TF TNR+ +PF +IV I+G  +  +     +  +    F W F  +V         +P +I+TD   A    I   MP   H LC WH+ KNL E+     + KH  G
Sbjct:  378 GDFISFDTTFSTNRYNMPFALIVGINGHGKNVIFGCALIEDQTAETFEWVFRTFVETMSGK---KPKIIMTDQDAAMKKAIANYMPDVIHRLCIWHIMKNLHEKCGCFMSQKHREG 490          
BLAST of mRNA_P-wetherbeei_contig19072.1.1 vs. uniprot
Match: A0A835Z0Q7_9STRA (SWIM-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0Q7_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 5.150e-10
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 1
Query:   13 QVIIQDNTFGTNRFGLPFFVIVCIDGDARTRVICQGFLRKEDTAAFTWAFENYVR 177
             VI QD TFGTN++GL   +IV ++GD++TR+ CQ  L +EDT AF+W F +YV+
Sbjct:   96 DVIQQDCTFGTNKYGLALSIIVGVNGDSKTRMFCQALLEREDTEAFSWFFVHYVK 150          
BLAST of mRNA_P-wetherbeei_contig19072.1.1 vs. uniprot
Match: A0A836CA74_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA74_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 5.770e-10
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 1
Query:   13 QVIIQDNTFGTNRFGLPFFVIVCIDGDARTRVICQGFLRKEDTAAFTWAFENYVR 177
             VI QD TFGTN++GL   +IV ++GD++TR+ CQ  L +EDT AF+W F +YV+
Sbjct:  221 DVIQQDCTFGTNKYGLALSIIVGVNGDSKTRMFCQALLEREDTEAFSWFFVHYVK 275          
BLAST of mRNA_P-wetherbeei_contig19072.1.1 vs. uniprot
Match: A0A0F7ZZT1_9HYPO (MULE domain-containing protein n=1 Tax=Hirsutella minnesotensis 3608 TaxID=1043627 RepID=A0A0F7ZZT1_9HYPO)

HSP 1 Score: 69.3 bits (168), Expect = 1.180e-9
Identity = 52/180 (28.89%), Postives = 71/180 (39.44%), Query Frame = 1
Query:   13 QVIIQDNTFGTNRFGLPFFVIVCIDGDARTRVICQGFLRKEDTAAFTWAFENYVRWCCDAGSCR--------PGVILTDDAKAAAAGIKKTMPITKHFLCSWHLYKNLKEQTDKHLRGD------------------------------ADLLRACRAAFRKAEYAATEEEFGGCWDDLM 438
             +++ D T  TNR+GL    I  I        +    + +EDTAAFTW FE    W       R        P VI+TD   A  A +  T P  +  +C+WH+ KN+     KH +GD                              AD +    AAF+   YA T EEF   W+ L+
Sbjct:    7 HLMMADVTNNTNRYGLKLLEINGITSLGTIFPLAFCLMPREDTAAFTWCFEQLRDWMTAEARQRELADDAFIPHVIITDYDAAERAALAATFPEAQLQVCTWHIMKNIATHARKHWQGDDDDPFELNREEIQRGEDPGPWTARPGQAKPADFI----AAFQSVLYAPTAEEFDDRWNALI 182          
BLAST of mRNA_P-wetherbeei_contig19072.1.1 vs. uniprot
Match: A0A2N9IWN9_FAGSY (Protein FAR1-RELATED SEQUENCE n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IWN9_FAGSY)

HSP 1 Score: 68.9 bits (167), Expect = 1.330e-9
Identity = 42/144 (29.17%), Postives = 70/144 (48.61%), Query Frame = 1
Query:   10 GQVIIQDNTFGTNRFGLPFFVIVCIDGDARTRVICQGFLRKEDTAAFTWAFENYVRWCCDAGSCR-PGVILTDDAKAAAAGIKKTMPITKHFLCSWHLYKNLKEQTDKHLRGDADLLRACRAAFRKAEYAATEEEFGGCWDDLM 438
            G V+  D+T+ TN++ LPF V++ ++   +T V   G L  E   A+TW  + +     DA + + P  ++TD  +A    I    P   H LCSWHL +N K+    H+   A    A +A  +      T ++F   W+ ++
Sbjct:  261 GDVVAFDSTYKTNKYNLPFVVLIGVNHHHQTIVFGSGLLNVETEEAYTWLLQAFH----DAMNNKSPVSVVTDGDRAMRNAINTVFPNANHRLCSWHLARNAKQ----HINNSA----ALQAFHKLMNDIQTRDQFEEKWNSMI 392          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19072.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A835Z7W2_9STRA5.280e-1534.48Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A015IJG7_RHIIW6.310e-1231.58SWIM-type domain-containing protein n=1 Tax=Rhizop... [more]
A0A444XRF2_ARAHY1.200e-1033.33Protein FAR1-RELATED SEQUENCE n=1 Tax=Arachis hypo... [more]
UPI0019D5D7642.230e-1032.77protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Panic... [more]
UPI00098ADE8C3.150e-1030.94protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Aegil... [more]
UPI0019D552B33.660e-1032.76protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Panic... [more]
A0A835Z0Q7_9STRA5.150e-1052.73SWIM-type domain-containing protein n=1 Tax=Tribon... [more]
A0A836CA74_9STRA5.770e-1052.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0F7ZZT1_9HYPO1.180e-928.89MULE domain-containing protein n=1 Tax=Hirsutella ... [more]
A0A2N9IWN9_FAGSY1.330e-929.17Protein FAR1-RELATED SEQUENCE n=1 Tax=Fagus sylvat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19072contigP-wetherbeei_contig19072:249..1200 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FLF6
PFAMsMULE
Model size835
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
Exons2
Evalue0.000908
EggNOG OGs2CMGX@1|root,2QQB8@2759|Eukaryota
Cds size270
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186163.0918086-UTR-P-wetherbeei_contig19072:248..3461683186163.0918086-UTR-P-wetherbeei_contig19072:248..346Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19072 249..346 +
1683186163.1022706-UTR-P-wetherbeei_contig19072:463..6261683186163.1022706-UTR-P-wetherbeei_contig19072:463..626Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19072 464..626 +
1683186163.122062-UTR-P-wetherbeei_contig19072:896..12001683186163.122062-UTR-P-wetherbeei_contig19072:896..1200Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19072 897..1200 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186163.1124456-CDS-P-wetherbeei_contig19072:626..8961683186163.1124456-CDS-P-wetherbeei_contig19072:626..896Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19072 627..896 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19072.1.1prot_P-wetherbeei_contig19072.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19072 627..896 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19072.1.1

>prot_P-wetherbeei_contig19072.1.1 ID=prot_P-wetherbeei_contig19072.1.1|Name=mRNA_P-wetherbeei_contig19072.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=90bp
MPITKHFLCSWHLYKNLKEQTDKHLRGDADLLRACRAAFRKAEYAATEEE
FGGCWDDLMVSMRWWTGWSFALLLGWCLFSRFRIFSFMV*
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mRNA from alignment at P-wetherbeei_contig19072:249..1200+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19072.1.1 ID=mRNA_P-wetherbeei_contig19072.1.1|Name=mRNA_P-wetherbeei_contig19072.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=952bp|location=Sequence derived from alignment at P-wetherbeei_contig19072:249..1200+ (Phaeothamnion wetherbeei SAG_119_79)
GAGTCGTGCGGCCAAGTCATCATTCAGGACAACACATTCGGCACGAACAG ATTTGGCCTTCCCTTCTTTGTCATCGTCTGCATTGACGGCGACGCCAGGT TAGTACGATTGCAGCGGTTCAGCGCCGCGTCTGGATACGTTCATTTTTGG AAATTTGTTTTTTCGCCCAGCAGTTTCTTGACCACGCTTCCGCGCTTATT CTTTTCCATTTATAGGACGAGGGTAATCTGCCAAGGCTTCCTGCGCAAGG AAGACACCGCCGCGTTTACGTGGGCGTTCGAGAATTACGTGAGGTGGTGC TGCGATGCCGGATCATGCCGGCCAGGTGTCATCCTTACAGACGATGCCAA GGCTGCGGCTGCCGGCATTAAAAAGACGATGCCCATCACAAAGCACTTCC TCTGCTCGTGGCATCTGTACAAGAACTTAAAAGAGCAGACGGACAAGCAC CTGCGTGGCGATGCTGACCTCCTTCGAGCCTGCCGTGCCGCCTTCCGCAA GGCGGAGTATGCGGCGACAGAGGAGGAGTTCGGCGGGTGTTGGGATGATC TCATGGTGAGCATGCGTTGGTGGACGGGCTGGAGCTTCGCTCTTCTGCTT GGTTGGTGTCTGTTTTCTCGATTTCGGATTTTTTCCTTTATGGTTTGATT GCGCATGTTTTCCTAGCATCTCGTCTTACTTTGTGCGAAGGCCGTGCATC TTTTTCTCACGTTAGGCGTTTGTTCTTTGTGGTGCCGTTTCTTGTAACAC CTTTTTGGCTGCAGACTGATCGCATGGCCCGTGCATCCTGATGTGTGTCA TAACTCTTCCTTTATTTCCCTTTACTTTGCACTGCCGGTGAGTCTGGTTG TCGAAAGCCATCTGATGACCGTGTTTCGCTTTTGAAATTACTTCCTGATT GATCCGCCCGAACCTACCCGTTTCTCAAAAAATTACAGGGGCTCCAACGG CT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19072:249..1200+

>mRNA_P-wetherbeei_contig19072.1.1 ID=mRNA_P-wetherbeei_contig19072.1.1|Name=mRNA_P-wetherbeei_contig19072.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig19072:249..1200+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCATCACAAAGCACTTCCTCTGCTCGTGGCATCTGTACAAGAACTT
AAAAGAGCAGACGGACAAGCACCTGCGTGGCGATGCTGACCTCCTTCGAG
CCTGCCGTGCCGCCTTCCGCAAGGCGGAGTATGCGGCGACAGAGGAGGAG
TTCGGCGGGTGTTGGGATGATCTCATGGTGAGCATGCGTTGGTGGACGGG
CTGGAGCTTCGCTCTTCTGCTTGGTTGGTGTCTGTTTTCTCGATTTCGGA
TTTTTTCCTTTATGGTTTGA
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