mRNA_P-wetherbeei_contig18906.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18906.1.2
Unique NamemRNA_P-wetherbeei_contig18906.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18906.1.2 vs. uniprot
Match: D8LFB8_ECTSI (Protein SDA1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFB8_ECTSI)

HSP 1 Score: 248 bits (633), Expect = 1.420e-73
Identity = 138/265 (52.08%), Postives = 161/265 (60.75%), Query Frame = 1
Query:    1 FFPQDKPLRQMLYEYIVADIRNVNRKGHNEKLNKALHALMYTMIGDASEVAAKRSLDVIVELYRRRVWTDARTVNAVAAALHSERTKLCCTALNFFLNIDGQMADDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGLFPAIMLLQDPQGTAEKVFRRLRQSNERFEVKLLMMNFVSRLVGAHRLLLLPLYSHLQRYLTSHQREVTKILAFVVQGCHDLVPP 795
            F  QDK LR MLY++IV DI+++N KG N KLNK +  L++TM+ D SE+AAK+SLD++V LYR+RVW DARTVN +A AL ++  KL CTALNFFLNID  MADD                                                                        GGLFPAI LL DPQGT EKVFRRLRQS +RFEVKLLMMNF+SR+VGAHRLLLLP YSHLQRY+ S QREVT ILA++VQ CHDLVPP
Sbjct:  131 FHCQDKMLRVMLYDHIVNDIKSINEKGRNPKLNKTIQNLVFTMLKDDSEIAAKKSLDIMVVLYRKRVWVDARTVNVIATALLADTPKLACTALNFFLNIDTMMADDDDEEGKAETAQAQVNTHEHSKKTAKRARSVQKQVKTNKKKNKAALSDESN----------------------GGLFPAINLLHDPQGTVEKVFRRLRQSKQRFEVKLLMMNFISRVVGAHRLLLLPFYSHLQRYVASQQREVTHILAYLVQACHDLVPP 373          
BLAST of mRNA_P-wetherbeei_contig18906.1.2 vs. uniprot
Match: A0A835Z7A4_9STRA (Protein SDA1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7A4_9STRA)

HSP 1 Score: 236 bits (603), Expect = 7.700e-70
Identity = 132/262 (50.38%), Postives = 159/262 (60.69%), Query Frame = 1
Query:   10 QDKPLRQMLYEYIVADIRNVNRKGHNEKLNKALHALMYTMIGDASEVAAKRSLDVIVELYRRRVWTDARTVNAVAAALHSERTKLCCTALNFFLNIDGQMADDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGLFPAIMLLQDPQGTAEKVFRRLRQSNERFEVKLLMMNFVSRLVGAHRLLLLPLYSHLQRYLTSHQREVTKILAFVVQGCHDLVPP 795
            QDK LRQ+L+++ V+DIR +N K  NEK+N+ L A MYTM+ D SE AAK+SLDV+VELY+RRVWTDARTVN +AAAL S  TKL  TALNFFL+ID +M ++                                                                         GLFPAI LL DPQGTAEKVF+RLR S+ERFEVKLLMMNF+SR++ AH+LL+LP YS LQRY+ SHQREVT ILA++VQ CH LVPP
Sbjct:  134 QDKSLRQLLFDHTVSDIRAINLKARNEKMNRTLQAFMYTMLQDESETAAKKSLDVMVELYKRRVWTDARTVNVIAAALDSSVTKLVTTALNFFLSIDAKMEEEEDADEAEGKRAPEVEMHQHAKKTSAIARKIKKQVKERKKKLNAVDEEK------------------------AGLFPAINLLNDPQGTAEKVFKRLRGSSERFEVKLLMMNFISRIISAHQLLMLPFYSFLQRYIQSHQREVTHILAYLVQACHPLVPP 371          
BLAST of mRNA_P-wetherbeei_contig18906.1.2 vs. uniprot
Match: I2CP60_NANGC (Protein SDA1 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP60_NANGC)

HSP 1 Score: 206 bits (523), Expect = 1.730e-59
Identity = 139/261 (53.26%), Postives = 175/261 (67.05%), Query Frame = 1
Query:   13 DKPLRQMLYEYIVADIRNVNRKGHNEKLNKALHALMYTMIGDASEVAAKRSLDVIVELYRRRVWTDARTVNAVAAALHSERTKLCCTALNFFLNIDGQMADDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGLFPAIMLLQDPQGTAEKVFRRLRQSNERFEVKLLMMNFVSRLVGAHRLLLLPLYSHLQRYLTSHQREVTKILAFVVQGCHDLVPP 795
            DK LR+MLY Y+++DIR +N K  NE+LNK L   MY M+ D   VAAKRSL+ +VELYRRRVWTD RTVN +A+A  S  T+L   A++FFL I+ +MADD           XXXXXXXXXXXXXXXXXXXXXXXXXX                                     LFPAI +L DPQG AEK+F++L+ SNERFEV+LL M+F+SRL+G H+L+LL  Y ++QRYL+S+Q+ VTK LA+++QGCHDL+PP
Sbjct:  142 DKSLREMLYTYVISDIRGLNSKARNERLNKELQGFMYIMLKDEHSVAAKRSLEAMVELYRRRVWTDPRTVNVIASACLSNSTRLSLMAVHFFLGIEQRMADDEEEELAVGKEAXXXXXXXXXXXXXXXXXXXXXXXXXXKRKELLRRLQGEGGDGGKEGGHSP-------------LFPAIQMLHDPQGLAEKLFKKLKMSNERFEVRLLYMDFLSRLLGLHKLMLLNFYPYVQRYLSSNQQHVTKTLAYLIQGCHDLIPP 389          
BLAST of mRNA_P-wetherbeei_contig18906.1.2 vs. uniprot
Match: A0A7S3Y5R9_HETAK (Protein SDA1 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5R9_HETAK)

HSP 1 Score: 198 bits (503), Expect = 1.380e-56
Identity = 113/262 (43.13%), Postives = 151/262 (57.63%), Query Frame = 1
Query:   13 DKPLRQMLYEYIVADIRNVNRKGHNEKLNKALHALMYTMIG-DASEVAAKRSLDVIVELYRRRVWTDARTVNAVAAALHSERTKLCCTALNFFLNIDGQMADDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGLFPAIMLLQDPQGTAEKVFRRLRQSNERFEVKLLMMNFVSRLVGAHRLLLLPLYSHLQRYLTSHQREVTKILAFVVQGCHDLVPP 795
            DK LRQ+L+++IVAD++ VN K  +E LN+ L   +Y M+G +ASE+AAK+SL+V+VELYRRRVWTDARTVNA+A  + S   KL   ++NFFL ID ++ADD                                                                          LFPAI LL DPQG AE+ F  L+++++RFEV+LL MNF+SR++  HRLLLLP Y++LQRY+T  Q  VT+ILA++VQGCH+LVPP
Sbjct:  111 DKNLRQLLFDHIVADVKMVNLKKKDEALNRQLQGFLYKMVGAEASEIAAKKSLEVLVELYRRRVWTDARTVNAIAQGVASPVAKLMVLSMNFFLGIDRKIADDDAAGSLYEPEQVQTHQHSKKTAKRARHVEKQKAGNRRRRLAKEAGKGAPEP-----------------------LFPAINLLHDPQGLAERAFASLKKADQRFEVRLLQMNFISRVLAHHRLLLLPFYTYLQRYVTGKQEHVTQILAYLVQGCHELVPP 349          
BLAST of mRNA_P-wetherbeei_contig18906.1.2 vs. uniprot
Match: A0A7S3M8Q0_9STRA (Protein SDA1 (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M8Q0_9STRA)

HSP 1 Score: 192 bits (488), Expect = 2.800e-54
Identity = 102/265 (38.49%), Postives = 148/265 (55.85%), Query Frame = 1
Query:    1 FFPQDKPLRQMLYEYIVADIRNVNRKGHNEKLNKALHALMYTMIGDASEVAAKRSLDVIVELYRRRVWTDARTVNAVAAALHSERTKLCCTALNFFLNIDGQMADDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGLFPAIMLLQDPQGTAEKVFRRLRQSNERFEVKLLMMNFVSRLVGAHRLLLLPLYSHLQRYLTSHQREVTKILAFVVQGCHDLVPP 795
            F   DK LR  L EYI  DI+ +N +  N+KLN+++ A +++++ + + + A+++++++ ELYRR++WTDARTVN +  A  S  T++   A+NFFL I+ +M +D                                                                          LFPAI +L DPQ  AEK+F++LRQS ERFEVKLL+MNFVSRL+G H+LLLL  YS LQRYLTSHQ+++T ILA+++QGCH+L+PP
Sbjct:  127 FSVTDKTLRSSLVEYIFNDIKTINHQKQNDKLNRSIQAFLFSVVEEDTTITARKTVEILCELYRRKIWTDARTVNMIGKACLSPSTRVTVAAVNFFLGIENKMHEDEEEEKASGDKTPADVNYHSHSKKTKKRARVVQKQIEHNAKLRRDSQKESSTTTP--------------------LFPAIQMLHDPQSLAEKLFKKLRQSGERFEVKLLLMNFVSRLIGCHKLLLLSFYSFLQRYLTSHQQDITLILAYLIQGCHELIPP 371          
BLAST of mRNA_P-wetherbeei_contig18906.1.2 vs. uniprot
Match: A0A7S2CST8_9STRA (Protein SDA1 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CST8_9STRA)

HSP 1 Score: 189 bits (481), Expect = 1.360e-52
Identity = 114/264 (43.18%), Postives = 145/264 (54.92%), Query Frame = 1
Query:   10 QDKPLRQMLYEYIVADIRNVNRKGHNEK-LNKALHALMYTMIG-DASEVAAKRSLDVIVELYRRRVWTDARTVNAVAAALHSERTKLCCTALNFFLNIDGQMADDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGLFPAIMLLQDPQGTAEKVFRRLRQSNERFEVKLLMMNFVSRLVGAHRLLLLPLYSHLQRYLTSHQREVTKILAFVVQGCHDLVPP 795
            QDK LR ++  +I+ DIR  N  G N+   NK + AL+++MI  + SE+ AK+SLDV+VELYRRR+WTD  TVN +AA   S+ TK+  TALNFFL I+ +MADD                                                                          LFPA+ LL DPQG AE +FR+LR SNERFEVKLL MN VSRL+G+H+LLLL  YS  QRYLTSHQ+ VT++L+++VQ  H LVPP
Sbjct:   49 QDKTLRALMCTHIINDIRKRNTSGGNKNNFNKKVQALLFSMIRQEDSEMRAKKSLDVVVELYRRRIWTDGATVNTIAAGCTSKHTKIMVTALNFFLGIESKMADDDDETAVDTNALEVKEHRHSRKTLSRAHRTERQTKWKEKKIRDLDNKAPQ------------------------ALFPALQLLNDPQGLAEGLFRKLRGSNERFEVKLLAMNMVSRLIGSHQLLLLSFYSFTQRYLTSHQKHVTQVLSYLVQASHPLVPP 288          
BLAST of mRNA_P-wetherbeei_contig18906.1.2 vs. uniprot
Match: A0A3L6VCH0_9STRA (Protein SDA1 n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VCH0_9STRA)

HSP 1 Score: 180 bits (457), Expect = 4.670e-50
Identity = 116/263 (44.11%), Postives = 151/263 (57.41%), Query Frame = 1
Query:   13 DKPLRQMLYEYIVADIRNVNRKG--HNEKLNKALHALMYTMIGDASEVAAKRSLDVIVELYRRRVWTDARTVNAVAAALHSERTKLCCTALNFFLNIDGQMADDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGLFPAIMLLQDPQGTAEKVFRRLRQSNERFEVKLLMMNFVSRLVGAHRLLLLPLYSHLQRYLTSHQREVTKILAFVVQGCHDLVPP 795
            DK LR+++Y +IV DI+ ++  G   NEK+ + L   MY+M+ D  E+AA +SL V+V LYR+R+W DARTVN +A A  S+ T++  TA+ FFL ID  + +D      XXXXXXXXXXX                                                        G FPAI LL DPQG AEK  R L+ SNERFEV+LLMM+F+ RLVG H+L+LL  Y  LQRYLT+HQ++VT ILA++VQ CHD +PP
Sbjct:  129 DKRLRELVYSHIVYDIKKMHTDGGGRNEKVMRGLQNFMYSMVADEHEIAAIKSLHVLVSLYRKRIWCDARTVNCIATACTSKNTRVLVTAIQFFLGIDADILEDDEAEKVXXXXXXXXXXXSYSKKTKSRYNHTKSQLVKNRKARKRNAEHD-------------------------GTFPAIDLLNDPQGVAEKQLRILKASNERFEVRLLMMDFIGRLVGQHKLVLLAFYPLLQRYLTAHQQKVTNILAYLVQACHDEIPP 366          
BLAST of mRNA_P-wetherbeei_contig18906.1.2 vs. uniprot
Match: A0A2R5GCF0_9STRA (Protein SDA1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GCF0_9STRA)

HSP 1 Score: 184 bits (468), Expect = 9.340e-50
Identity = 115/268 (42.91%), Postives = 151/268 (56.34%), Query Frame = 1
Query:   10 QDKPLRQMLYEYIVADIRNVNRKGHNEKLNKALHALMYTMIGDASEVAAKRSLDVIVELYRRRVWTDARTVNAVAAALHSERTKLCCTALNFFLNIDGQM-------ADDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGLFPAIMLLQDPQGTAEKVFRRLRQSNERFEVKLLMMNFVSRLVGAHRLLLLPLYSHLQRYLTSHQREVTKILAFVVQGCHDLVP 792
            QDK LR++LY +IVAD+RNVN+K  N KLN+A+  ++Y+M+ D S +AAKRSL V+V+LY+RRVWTD RTVN +A A  S + K     L FFL ID ++        DD                                              XXXXXXXXX                    FPAI L+ DPQG +EK+F++LR S + FEV+LLMMN +SR+VG H+L++L  YS +QRYL  HQR VT ILA+++Q  H+LVP
Sbjct:  120 QDKTLRELLYTHIVADVRNVNKKASNHKLNRAIQNVVYSMLEDPSSIAAKRSLQVMVDLYKRRVWTDGRTVNVIAEACLSNQPKNVAIGLQFFLGIDEKIDALQDDEEDDAIEDALQASTGKTRDKLERGAQKTSRMYSKKTRARLRKKEKDEKALXXXXXXXXXAREAGNAGTSSERRRIAAPRFPAIDLISDPQGFSEKLFKKLRGSRDHFEVRLLMMNLISRIVGHHKLIMLSFYSFVQRYLQPHQRHVTNILAYLIQASHELVP 387          
BLAST of mRNA_P-wetherbeei_contig18906.1.2 vs. uniprot
Match: K3WVT4_GLOUD (Protein SDA1 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WVT4_GLOUD)

HSP 1 Score: 177 bits (450), Expect = 2.780e-49
Identity = 102/261 (39.08%), Postives = 139/261 (53.26%), Query Frame = 1
Query:   13 DKPLRQMLYEYIVADIRNVNRKGHNEKLNKALHALMYTMIGDASEVAAKRSLDVIVELYRRRVWTDARTVNAVAAALHSERTKLCCTALNFFLNIDGQMADDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGLFPAIMLLQDPQGTAEKVFRRLRQSNERFEVKLLMMNFVSRLVGAHRLLLLPLYSHLQRYLTSHQREVTKILAFVVQGCHDLVPP 795
            DK LR++LY++IV+DIR +N    N K+NKAL   ++ M+ D +E AA +SL V+V+L++R+VW D R+VN +A A  S+ TKL   +LNFFL ID  + +D                                                                           FPAI +L DPQG AEK F+ L+   ERFEVKLLMMNF+ R++G H+L+LLP Y  LQRYL SHQ+ VT++LA++VQ CHD +PP
Sbjct:  133 DKRLRELLYKHIVSDIRQLNATSKNVKVNKALQNFLFDMLQDENEHAALKSLQVLVDLFKRKVWHDQRSVNVIATACTSKNTKLLVMSLNFFLGIDDDILEDEENQKKEKKALIEVDYHSHSKKTKKRHRDTVSALKKNKRARKRDIEFQ-------------------------ATFPAIEMLNDPQGVAEKQFKVLKGCTERFEVKLLMMNFIGRVLGFHKLVLLPYYPLLQRYLQSHQQNVTQVLAYLVQSCHDEIPP 368          
BLAST of mRNA_P-wetherbeei_contig18906.1.2 vs. uniprot
Match: R7T4X4_CAPTE (Protein SDA1 n=1 Tax=Capitella teleta TaxID=283909 RepID=R7T4X4_CAPTE)

HSP 1 Score: 181 bits (459), Expect = 5.220e-49
Identity = 108/262 (41.22%), Postives = 133/262 (50.76%), Query Frame = 1
Query:   10 QDKPLRQMLYEYIVADIRNVNRKGHNEKLNKALHALMYTMIGDASEVAAKRSLDVIVELYRRRVWTDARTVNAVAAALHSERTKLCCTALNFFLNIDGQMADDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGLFPAIMLLQDPQGTAEKVFRRLRQSNERFEVKLLMMNFVSRLVGAHRLLLLPLYSHLQRYLTSHQREVTKILAFVVQGCHDLVPP 795
            QDK LR+ LY YIV DI+NVN+K  N KLN  L   M+TM+ D++  AAK SLDV++ELYRR +W DA+TVN +  AL S+ TK+   AL FFL +D   ADD                                                                           F AI L+ DPQ  +EK+F+ L +SNERFEVKL MMN +SRLVG H+L L   Y  +QR+L  HQR+VTKIL F  Q  HDLVPP
Sbjct:  131 QDKVLRKTLYNYIVQDIKNVNQKHRNMKLNVTLQNFMFTMLRDSNATAAKMSLDVMIELYRRNIWKDAKTVNVIVTALFSKVTKILMGALQFFLGVDEDTADDESSSEDEGAKSQKDILLAHRVGKKTKKRQKTMDKALTALKKHKKKRKPAAFN-----------------------FSAIHLINDPQDLSEKLFKVLEKSNERFEVKLCMMNLISRLVGIHKLFLFNFYPFIQRFLQPHQRDVTKILLFSAQSSHDLVPP 369          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18906.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFB8_ECTSI1.420e-7352.08Protein SDA1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A835Z7A4_9STRA7.700e-7050.38Protein SDA1 n=1 Tax=Tribonema minus TaxID=303371 ... [more]
I2CP60_NANGC1.730e-5953.26Protein SDA1 (Fragment) n=1 Tax=Nannochloropsis ga... [more]
A0A7S3Y5R9_HETAK1.380e-5643.13Protein SDA1 (Fragment) n=1 Tax=Heterosigma akashi... [more]
A0A7S3M8Q0_9STRA2.800e-5438.49Protein SDA1 (Fragment) n=1 Tax=Spumella elongata ... [more]
A0A7S2CST8_9STRA1.360e-5243.18Protein SDA1 n=1 Tax=Dictyocha speculum TaxID=3568... [more]
A0A3L6VCH0_9STRA4.670e-5044.11Protein SDA1 n=3 Tax=Aphanomyces astaci TaxID=1120... [more]
A0A2R5GCF0_9STRA9.340e-5042.91Protein SDA1 n=1 Tax=Hondaea fermentalgiana TaxID=... [more]
K3WVT4_GLOUD2.780e-4939.08Protein SDA1 n=1 Tax=Globisporangium ultimum (stra... [more]
R7T4X4_CAPTE5.220e-4941.22Protein SDA1 n=1 Tax=Capitella teleta TaxID=283909... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18906contigP-wetherbeei_contig18906:40..1074 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LFB8
Preferred nameSDAD1
PFAMsNUC130_3NT,SDA1
Model size795
Max annot lvl2759|Eukaryota
KEGG koko:K14856
Hectar predicted targeting categoryother localisation
GOsGO:0000054,GO:0000055,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006403,GO:0006405,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007089,GO:0007346,GO:0008104,GO:0008150,GO:0009987,GO:0010033,GO:0010564,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0022613,GO:0030029,GO:0030036,GO:0031503,GO:0031974,GO:0031981,GO:0033036,GO:0033750,GO:0034097,GO:0034613,GO:0042221,GO:0042254,GO:0042273,GO:0042886,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0045787,GO:0045931,GO:0046907,GO:0048518,GO:0048522,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051716,GO:0051726,GO:0065007,GO:0070013,GO:0070727,GO:0070887,GO:0071166,GO:0071310,GO:0071345,GO:0071426,GO:0071428,GO:0071702,GO:0071705,GO:0071840,GO:0090068,GO:1900087,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902806,GO:1902808,GO:1990823,GO:1990830,GO:2000045
Exons2
Evalue3.54e-71
EggNOG OGsKOG2229@1|root,KOG2229@2759|Eukaryota
Descriptionribosomal large subunit export from nucleus
Cds size765
COG categoryS
BRITEko00000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186158.61446-CDS-P-wetherbeei_contig18906:39..7411683186158.61446-CDS-P-wetherbeei_contig18906:39..741Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18906 40..741 -
1683186158.6345572-CDS-P-wetherbeei_contig18906:981..10441683186158.6345572-CDS-P-wetherbeei_contig18906:981..1044Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18906 982..1044 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186158.644328-UTR-P-wetherbeei_contig18906:1044..10741683186158.644328-UTR-P-wetherbeei_contig18906:1044..1074Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18906 1045..1074 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18906.1.2prot_P-wetherbeei_contig18906.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18906 40..1044 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18906.1.2

>prot_P-wetherbeei_contig18906.1.2 ID=prot_P-wetherbeei_contig18906.1.2|Name=mRNA_P-wetherbeei_contig18906.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=255bp
MLYEYIVADIRNVNRKGHNEKLNKALHALMYTMIGDASEVAAKRSLDVIV
ELYRRRVWTDARTVNAVAAALHSERTKLCCTALNFFLNIDGQMADDDDDD
EDGGGGGGSGGGGAGGSKAKAAAAAMEVNLHKHSKKTRARARDTQRKAKA
RKAALTPEKEKDKDSGNGGGLFPAIMLLQDPQGTAEKVFRRLRQSNERFE
VKLLMMNFVSRLVGAHRLLLLPLYSHLQRYLTSHQREVTKILAFVVQGCH
DLVPP
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mRNA from alignment at P-wetherbeei_contig18906:40..1074-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18906.1.2 ID=mRNA_P-wetherbeei_contig18906.1.2|Name=mRNA_P-wetherbeei_contig18906.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1035bp|location=Sequence derived from alignment at P-wetherbeei_contig18906:40..1074- (Phaeothamnion wetherbeei SAG_119_79)
TTTTTCCCGCAGGATAAGCCGCTGAGACAGATGCTTTACGAGTACATTGT GGCCGACATCCGCAACGTCAACCGCAAGGGCCACAACGAGAAGGTGGGCT TTTGGGATGGCTCTGTTAGAAGCGCAAAATAGCACGGTGCTTCCCCTGGC TTCCCCTTCTAATTGCGCTTTATGCAAGGCTTGCAAGTGCGGCAGCTGTA ATGTCCGTTTTCCTATTCCCTTATCTACTTGAAGGAGGTGCAAAAAAGAA TATTTGGACCTTCGGCTTCACGAATCCCACCTCTCAATCCCCAAAGCTAA ACCACCTTTTGCTCCCGCTTTCTCATCTGGCAGCTGAACAAGGCGCTGCA CGCGCTGATGTACACGATGATAGGGGACGCGTCGGAGGTGGCGGCCAAGC GTTCGCTTGATGTCATCGTGGAGCTCTACCGCCGCCGCGTCTGGACCGAC GCCCGCACCGTCAACGCTGTCGCCGCGGCGCTGCACTCGGAACGCACCAA GCTCTGCTGCACCGCGCTTAACTTCTTCCTTAACATTGACGGTCAGATGG CGGACGACGACGACGACGACGAAGACGGTGGCGGCGGCGGCGGTTCCGGC GGCGGCGGAGCTGGCGGCTCCAAGGCGAAGGCGGCGGCGGCGGCGATGGA GGTGAACCTTCACAAGCACTCGAAGAAGACGCGGGCACGAGCGCGCGACA CACAGCGGAAGGCAAAGGCGCGCAAGGCAGCGCTGACGCCCGAGAAGGAA AAGGATAAGGATAGTGGTAACGGCGGGGGGCTGTTTCCGGCGATCATGCT GCTGCAGGACCCGCAGGGCACGGCGGAAAAGGTGTTTCGGCGGCTGCGTC AGAGCAATGAGCGGTTCGAGGTGAAGCTGCTGATGATGAACTTTGTGAGC CGGCTGGTGGGCGCCCACCGGCTGCTGCTGCTGCCGCTGTACTCGCACCT GCAGCGCTACCTGACGTCGCACCAGCGGGAGGTGACGAAGATCCTCGCGT TCGTGGTGCAAGGCTGCCACGATCTCGTGCCGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18906:40..1074-

>mRNA_P-wetherbeei_contig18906.1.2 ID=mRNA_P-wetherbeei_contig18906.1.2|Name=mRNA_P-wetherbeei_contig18906.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=765bp|location=Sequence derived from alignment at P-wetherbeei_contig18906:40..1074- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTTACGAGTACATTGTGGCCGACATCCGCAACGTCAACCGCAAGGG
CCACAACGAGAAGCTGAACAAGGCGCTGCACGCGCTGATGTACACGATGA
TAGGGGACGCGTCGGAGGTGGCGGCCAAGCGTTCGCTTGATGTCATCGTG
GAGCTCTACCGCCGCCGCGTCTGGACCGACGCCCGCACCGTCAACGCTGT
CGCCGCGGCGCTGCACTCGGAACGCACCAAGCTCTGCTGCACCGCGCTTA
ACTTCTTCCTTAACATTGACGGTCAGATGGCGGACGACGACGACGACGAC
GAAGACGGTGGCGGCGGCGGCGGTTCCGGCGGCGGCGGAGCTGGCGGCTC
CAAGGCGAAGGCGGCGGCGGCGGCGATGGAGGTGAACCTTCACAAGCACT
CGAAGAAGACGCGGGCACGAGCGCGCGACACACAGCGGAAGGCAAAGGCG
CGCAAGGCAGCGCTGACGCCCGAGAAGGAAAAGGATAAGGATAGTGGTAA
CGGCGGGGGGCTGTTTCCGGCGATCATGCTGCTGCAGGACCCGCAGGGCA
CGGCGGAAAAGGTGTTTCGGCGGCTGCGTCAGAGCAATGAGCGGTTCGAG
GTGAAGCTGCTGATGATGAACTTTGTGAGCCGGCTGGTGGGCGCCCACCG
GCTGCTGCTGCTGCCGCTGTACTCGCACCTGCAGCGCTACCTGACGTCGC
ACCAGCGGGAGGTGACGAAGATCCTCGCGTTCGTGGTGCAAGGCTGCCAC
GATCTCGTGCCGCCG
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