mRNA_P-wetherbeei_contig18893.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18893.2.1
Unique NamemRNA_P-wetherbeei_contig18893.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18893.2.1 vs. uniprot
Match: A0A0U5MJC9_9PROT (Uncharacterized protein n=1 Tax=Magnetospirillum sp. XM-1 TaxID=1663591 RepID=A0A0U5MJC9_9PROT)

HSP 1 Score: 90.9 bits (224), Expect = 7.810e-23
Identity = 49/63 (77.78%), Postives = 51/63 (80.95%), Query Frame = 1
Query:    4 FLTLFVATHVSILTSDTSSSPRGSAFAGLRNAPLPRAVELHIRSFGGWLNPRYIFRAGTL-DQ 189
            FLTLFVATHVSILTSDTSS+    AFAGLRNAPLPRA+ LH RSFG WL PRYIF A  L DQ
Sbjct:    2 FLTLFVATHVSILTSDTSSASHDDAFAGLRNAPLPRAL-LHTRSFGAWLEPRYIFGARQLLDQ 63          
BLAST of mRNA_P-wetherbeei_contig18893.2.1 vs. uniprot
Match: G8APH4_9PROT (Uncharacterized protein n=2 Tax=Azospirillum TaxID=191 RepID=G8APH4_9PROT)

HSP 1 Score: 65.9 bits (159), Expect = 6.090e-13
Identity = 39/64 (60.94%), Postives = 42/64 (65.62%), Query Frame = 1
Query:    4 FLTLFVATHVSILTSDTSSSPRGS---AFAGLRNAPLPRAVELHIRSFGGWLNPRYIFRAGTLD 186
            FLTLFVATHVSILTSDTS  PRG    A+  LR       +  HIRSFG  L PRYIF AG L+
Sbjct:    2 FLTLFVATHVSILTSDTSRHPRGDPSQAYGTLRY----HVIRDHIRSFGTRLEPRYIFGAGRLN 61          
BLAST of mRNA_P-wetherbeei_contig18893.2.1 vs. uniprot
Match: UPI001E6402C8 (hypothetical protein n=1 Tax=Candidatus Paracaedibacter symbiosus TaxID=244582 RepID=UPI001E6402C8)

HSP 1 Score: 57.8 bits (138), Expect = 1.020e-9
Identity = 34/52 (65.38%), Postives = 37/52 (71.15%), Query Frame = 2
Query:    8 SHS-LSLLMSAFSLPIPPAALAGLPSQAYGTLRYHVQ*NC-TSAASVDGLIP 157
            SH+ L+LLMS F+LPIPPAAL   PSQAYGTLRY V     T AASV G  P
Sbjct:   13 SHNPLTLLMSTFALPIPPAALTSPPSQAYGTLRYRVNAYALTPAASVHGFSP 64          
BLAST of mRNA_P-wetherbeei_contig18893.2.1 vs. uniprot
Match: E0XT19_9PROT (Uncharacterized protein n=1 Tax=uncultured alpha proteobacterium HF0130_06E21 TaxID=710808 RepID=E0XT19_9PROT)

HSP 1 Score: 52.0 bits (123), Expect = 1.820e-7
Identity = 29/51 (56.86%), Postives = 31/51 (60.78%), Query Frame = 3
Query:    3 VSHTLCRYSCQHSHFRYLQQPSRVCLRRLTERSA--TTCSRTAHPQLRWMA 149
            VSHTL RYSCQHSHFRYLQ  SR     L       T+    AHPQ RW+A
Sbjct:   12 VSHTLYRYSCQHSHFRYLQHLSRDTFAGLRNAPLPRTSSVEIAHPQFRWIA 62          
BLAST of mRNA_P-wetherbeei_contig18893.2.1 vs. uniprot
Match: A0A1Q9C0X1_SYMMI (Uncharacterized protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9C0X1_SYMMI)

HSP 1 Score: 55.1 bits (131), Expect = 2.640e-7
Identity = 32/55 (58.18%), Postives = 37/55 (67.27%), Query Frame = 2
Query:    5 FSHSLSLLMSAFSLPIPPAALAGLPSQAYGTLRYHVQ*NCTSAASVDGLIPVTFS 169
            FS  LSLLMSAF+L IPP AL GLPSQAYGTLR+  +    +A S+D     T S
Sbjct:   15 FSLPLSLLMSAFALVIPPGALTGLPSQAYGTLRHRPK----AARSIDSKTSFTRS 65          
BLAST of mRNA_P-wetherbeei_contig18893.2.1 vs. uniprot
Match: A0A6A5KV19_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5KV19_LUPAL)

HSP 1 Score: 54.3 bits (129), Expect = 5.590e-7
Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = 3
Query:    3 VSHTLCRYSCQHSHFRYLQQPSRVCLRRLTERSATTCSRTAHPQLRWMA*SPLHFPRRN 179
            VSH L RYSCQHSHFRYLQ+PS     + T  +    S   +PQLR MA +PLHF R++
Sbjct:  285 VSHPLYRYSCQHSHFRYLQRPSTGPPSQ-TYGTLRYHSSKRNPQLRCMALAPLHFRRKD 342          
BLAST of mRNA_P-wetherbeei_contig18893.2.1 vs. uniprot
Match: Q3BKI0_9PROT (Uncharacterized protein n=1 Tax=Magnetospirillum gryphiswaldense TaxID=55518 RepID=Q3BKI0_9PROT)

HSP 1 Score: 52.0 bits (123), Expect = 1.120e-6
Identity = 22/23 (95.65%), Postives = 23/23 (100.00%), Query Frame = 3
Query:    3 VSHTLCRYSCQHSHFRYLQQPSR 71
            VSHTLCRYSCQHSHFRYLQ+PSR
Sbjct:  128 VSHTLCRYSCQHSHFRYLQRPSR 150          
BLAST of mRNA_P-wetherbeei_contig18893.2.1 vs. uniprot
Match: A0A0D0GNS6_9BURK (Uncharacterized protein n=1 Tax=Burkholderia sp. MSHR3999 TaxID=1542965 RepID=A0A0D0GNS6_9BURK)

HSP 1 Score: 52.0 bits (123), Expect = 1.600e-6
Identity = 31/57 (54.39%), Postives = 37/57 (64.91%), Query Frame = 2
Query:    8 SHSLSLLMSAFSLPIPPAALAGLPSQAYGTLRYHVQ*NCTSAASVDGLIPVTFSAQE 178
            S  LSLLMSAF+LPIP + L   PSQAYGTL YH +     +  +  L PVT SAQ+
Sbjct:  110 SPPLSLLMSAFALPIPSSTLYKAPSQAYGTLSYHARLARIRSFGI-WLSPVTSSAQD 165          
BLAST of mRNA_P-wetherbeei_contig18893.2.1 vs. uniprot
Match: E0XS38_9PROT (Uncharacterized protein (Fragment) n=1 Tax=uncultured alpha proteobacterium HF0070_14E07 TaxID=710804 RepID=E0XS38_9PROT)

HSP 1 Score: 50.1 bits (118), Expect = 5.160e-6
Identity = 21/22 (95.45%), Postives = 21/22 (95.45%), Query Frame = 3
Query:    3 VSHTLCRYSCQHSHFRYLQQPS 68
            VSHTLCRYSCQHSHFRYLQ PS
Sbjct:   50 VSHTLCRYSCQHSHFRYLQHPS 71          
BLAST of mRNA_P-wetherbeei_contig18893.2.1 vs. uniprot
Match: A0A7J6JS32_9INSE (Uncharacterized protein n=1 Tax=Ephemera danica TaxID=1049336 RepID=A0A7J6JS32_9INSE)

HSP 1 Score: 50.8 bits (120), Expect = 8.700e-6
Identity = 31/59 (52.54%), Postives = 34/59 (57.63%), Query Frame = 1
Query:   10 TLFVATHVSILTSDTSSSPRGSAFAGLRNAPLPRAVELHIRSFGGWLNPRYIFRAGTLD 186
            T F+ATHVSI TSD SS    +     R   LP  +   IRSFG    PRYIFRAG LD
Sbjct:  212 TPFIATHVSIRTSDISSILYKTPSQTYRT--LPYHILTDIRSFGAQFEPRYIFRAGRLD 268          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18893.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A0U5MJC9_9PROT7.810e-2377.78Uncharacterized protein n=1 Tax=Magnetospirillum s... [more]
G8APH4_9PROT6.090e-1360.94Uncharacterized protein n=2 Tax=Azospirillum TaxID... [more]
UPI001E6402C81.020e-965.38hypothetical protein n=1 Tax=Candidatus Paracaedib... [more]
E0XT19_9PROT1.820e-756.86Uncharacterized protein n=1 Tax=uncultured alpha p... [more]
A0A1Q9C0X1_SYMMI2.640e-758.18Uncharacterized protein (Fragment) n=1 Tax=Symbiod... [more]
A0A6A5KV19_LUPAL5.590e-754.24Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
Q3BKI0_9PROT1.120e-695.65Uncharacterized protein n=1 Tax=Magnetospirillum g... [more]
A0A0D0GNS6_9BURK1.600e-654.39Uncharacterized protein n=1 Tax=Burkholderia sp. M... [more]
E0XS38_9PROT5.160e-695.45Uncharacterized protein (Fragment) n=1 Tax=uncultu... [more]
A0A7J6JS32_9INSE8.700e-652.54Uncharacterized protein n=1 Tax=Ephemera danica Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18893contigP-wetherbeei_contig18893:436..627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1150469.RSPPHO_03259
Model size192
Max annot lvl2|Bacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue0.000888
EggNOG OGs2DTV2@1|root,33MS7@2|Bacteria,1NKAB@1224|Proteobacteria
Cds size192
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186158.0131314-CDS-P-wetherbeei_contig18893:435..6271683186158.0131314-CDS-P-wetherbeei_contig18893:435..627Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18893 436..627 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18893.2.1prot_P-wetherbeei_contig18893.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18893 436..627 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18893.2.1

>prot_P-wetherbeei_contig18893.2.1 ID=prot_P-wetherbeei_contig18893.2.1|Name=mRNA_P-wetherbeei_contig18893.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=64bp
VFLTLFVATHVSILTSDTSSSPRGSAFAGLRNAPLPRAVELHIRSFGGWL
NPRYIFRAGTLDQ*
back to top

mRNA from alignment at P-wetherbeei_contig18893:436..627+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18893.2.1 ID=mRNA_P-wetherbeei_contig18893.2.1|Name=mRNA_P-wetherbeei_contig18893.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=192bp|location=Sequence derived from alignment at P-wetherbeei_contig18893:436..627+ (Phaeothamnion wetherbeei SAG_119_79)
GTGTTTCTCACACTCTTTGTCGCTACTCATGTCAGCATTCTCACTTCCGA TACCTCCAGCAGCCCTCGCGGGTCTGCCTTCGCAGGCTTACGGAACGCTC CGCTACCACGTGCAGTAGAACTGCACATCCGCAGCTTCGGTGGATGGCTT AATCCCCGTTACATTTTCCGCGCAGGAACGCTTGACCAGTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig18893:436..627+

>mRNA_P-wetherbeei_contig18893.2.1 ID=mRNA_P-wetherbeei_contig18893.2.1|Name=mRNA_P-wetherbeei_contig18893.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=192bp|location=Sequence derived from alignment at P-wetherbeei_contig18893:436..627+ (Phaeothamnion wetherbeei SAG_119_79)
GTGTTTCTCACACTCTTTGTCGCTACTCATGTCAGCATTCTCACTTCCGA
TACCTCCAGCAGCCCTCGCGGGTCTGCCTTCGCAGGCTTACGGAACGCTC
CGCTACCACGTGCAGTAGAACTGCACATCCGCAGCTTCGGTGGATGGCTT
AATCCCCGTTACATTTTCCGCGCAGGAACGCTTGACCAGTGA
back to top