mRNA_P-wetherbeei_contig18685.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18685.2.1
Unique NamemRNA_P-wetherbeei_contig18685.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18685.2.1 vs. uniprot
Match: A0A847P0Y4_9BACT (HPF/RaiA family ribosome-associated protein n=1 Tax=Fibrobacter sp. TaxID=35828 RepID=A0A847P0Y4_9BACT)

HSP 1 Score: 93.6 bits (231), Expect = 2.420e-21
Identity = 53/124 (42.74%), Postives = 77/124 (62.10%), Query Frame = 1
Query:    1 MQNPLEIKFLHMDTSESLDSTIRARVAKMEKLHGHVNSCRVVVERVQFHGHPG--CSVKIEVGVPPRKELVVSKDSSSYDSNKHNPTRAVIDEAFDAMEGQLKKFASKQKGDVKSHNHDEVEVV 366
            MQ PLEI F  ++ +E L+  IR + AK++++ GH+NSCRV+VE+VQ H   G    V++++ +PP  ELVVS+D S  D   H    A I  AF+A   Q+K+   K  GDVK H + +V+ V
Sbjct:    1 MQVPLEITFRDVEKTEELEELIRRKAAKLDRIFGHINSCRVIVEKVQKHQSSGQPYRVRLDIKIPPGHELVVSRDPSKGDL--HLDVAAEIRWAFEAAARQIKELVDKLNGDVKVHPYQQVQGV 122          
BLAST of mRNA_P-wetherbeei_contig18685.2.1 vs. uniprot
Match: A0A1I6GYH3_9GAMM (Cold shock protein, CspA family n=1 Tax=Marinobacter daqiaonensis TaxID=650891 RepID=A0A1I6GYH3_9GAMM)

HSP 1 Score: 87.0 bits (214), Expect = 1.370e-18
Identity = 47/117 (40.17%), Postives = 77/117 (65.81%), Query Frame = 1
Query:    1 MQNPLEIKFLHMDTSESLDSTIRARVAKMEKLHGHVNSCRVVVERVQFHGHPG--CSVKIEVGVPPRKELVVSKDSSSYDSNKHNPTRAVIDEAFDAMEGQLKKFASKQKGDVKSHN 345
            MQ PLE+KF  +D ++ ++  IR R  +++++  H+ SCRVVVER Q H + G    V++EV +PP+K+LV  K+ +  D   H   R +I +AF+A+E Q++K  ++Q+G VK H+
Sbjct:    1 MQIPLEVKFADVDHTQWVEDYIRERADRLDRMCDHLMSCRVVVERAQHHHNTGNPYRVRVEVTLPPKKDLVSDKEGTVADP--HVQLRPIIRKAFEAIEKQIEKETARQRGAVKFHD 115          
BLAST of mRNA_P-wetherbeei_contig18685.2.1 vs. uniprot
Match: UPI000376DAA8 (HPF/RaiA family ribosome-associated protein n=3 Tax=Methylococcaceae TaxID=403 RepID=UPI000376DAA8)

HSP 1 Score: 84.0 bits (206), Expect = 1.040e-17
Identity = 47/116 (40.52%), Postives = 69/116 (59.48%), Query Frame = 1
Query:    1 MQNPLEIKFLHMDTSESLDSTIRARVAKMEKLHGHVNSCRVVVERVQFHGHPGCSVKIEVGVP-PRKELVVSKDSSSYDSNKHNPTRAVIDEAFDAMEGQLKKFASKQKGDVKSHN 345
            MQ PL+I F  +  S+++++ IR +VAK+EK H H+ SCRV VE    H   G    I + +  PRKELV+S++   +D   H      I +AF A   QL+ +A  Q+G+VK+HN
Sbjct:    1 MQIPLQITFRGIPHSDAVEARIREKVAKLEKFHTHIMSCRVAVESEHQHHRHGNQYHIRIDITTPRKELVISREH--HDKQAHEDIYVAIRDAFKAATRQLEDYARVQRGEVKNHN 114          
BLAST of mRNA_P-wetherbeei_contig18685.2.1 vs. uniprot
Match: UPI00045E840B (HPF/RaiA family ribosome-associated protein n=1 Tax=Methylomicrobium lacus TaxID=136992 RepID=UPI00045E840B)

HSP 1 Score: 81.6 bits (200), Expect = 1.910e-17
Identity = 44/116 (37.93%), Postives = 71/116 (61.21%), Query Frame = 1
Query:    1 MQNPLEIKFLHMDTSESLDSTIRARVAKMEKLHGHVNSCRVVVERVQFHGHPGCSVKIEVGVP-PRKELVVSKDSSSYDSNKHNPTRAVIDEAFDAMEGQLKKFASKQKGDVKSHN 345
            MQ PL+I F  ++ SE++++ IR +VAK+E+ H H+ SCRV VE    H H G    I + +  P KE+V+S++   +D+  H      I +AF+A   QL+ +   Q+G+VK+H+
Sbjct:    1 MQIPLQIIFRGIEPSEAVEARIREKVAKLERFHSHMMSCRVAVEAGHQHHHQGNLYHIRIDITTPGKEIVISREH--HDNQAHEDVYVAIRDAFNAAARQLEDYVRVQRGEVKTHS 114          
BLAST of mRNA_P-wetherbeei_contig18685.2.1 vs. uniprot
Match: A0A0F2QQH7_9DELT (DNA-binding protein n=1 Tax=Desulfatitalea sp. BRH_c12 TaxID=1629708 RepID=A0A0F2QQH7_9DELT)

HSP 1 Score: 82.8 bits (203), Expect = 3.620e-17
Identity = 49/121 (40.50%), Postives = 74/121 (61.16%), Query Frame = 1
Query:    1 MQNPLEIKFLHMDTSESLDSTIRARVAKMEKLHGHVNSCRVVVER---VQFHGHPGCSVKIEVGVPPRKELVVSKDSSSYDSNKHNPTRAVIDEAFDAMEGQLKKFASKQKGDVKSHNHDE 354
            M+ P+EI +  +  S+S+DS IR + AKM+++  H+ SCRV +E+    Q  G P   V+IE+ VPP   LV  ++S+  D   HN  +A+I +AFDA+  QL+K   +Q G +KSH   E
Sbjct:    1 MKVPIEITYRDVAKSDSIDSLIREKAAKMDQICDHITSCRVAIEKPHEFQRSGQP-YRVRIEMRVPPGHVLVAKRESTEGDI--HNDLQAIIRDAFDAIRRQLQKVNRQQHGQIKSHPEQE 118          
BLAST of mRNA_P-wetherbeei_contig18685.2.1 vs. uniprot
Match: H8GM11_METAL (Ribosome-associated protein Y (PSrp-1) n=2 Tax=Methylomicrobium TaxID=39773 RepID=H8GM11_METAL)

HSP 1 Score: 79.7 bits (195), Expect = 1.050e-16
Identity = 42/116 (36.21%), Postives = 70/116 (60.34%), Query Frame = 1
Query:    1 MQNPLEIKFLHMDTSESLDSTIRARVAKMEKLHGHVNSCRVVVERVQFHGHPGCSVKIEVGVP-PRKELVVSKDSSSYDSNKHNPTRAVIDEAFDAMEGQLKKFASKQKGDVKSHN 345
            MQ PL+I F  ++ SE++++ IR +VAK+++ H H+ SCRV VE    H H G    I + +  P KE+V S++   +++  H      I +AF+A   QL+ +   Q+G+VK+H+
Sbjct:    1 MQIPLQIIFRGIEPSEAVEARIREKVAKLDRFHSHIMSCRVAVESGHHHHHQGNLYHIRIDITTPGKEIVTSRER--HENQAHEDVYVAIRDAFNAATRQLEDYVRMQRGEVKNHS 114          
BLAST of mRNA_P-wetherbeei_contig18685.2.1 vs. uniprot
Match: A0A7C1YLR7_9GAMM (HPF/RaiA family ribosome-associated protein n=1 Tax=Sedimenticola sp. TaxID=1940285 RepID=A0A7C1YLR7_9GAMM)

HSP 1 Score: 81.3 bits (199), Expect = 1.390e-16
Identity = 46/116 (39.66%), Postives = 69/116 (59.48%), Query Frame = 1
Query:    1 MQNPLEIKFLHMDTSESLDSTIRARVAKMEKLHGHVNSCRVVVERVQFHGHPG--CSVKIEVGVPPRKELVVSKDSSSYDSNKHNPTRAVIDEAFDAMEGQLKKFASKQKGDVKSH 342
            MQ PL+I F H+D+S +++  +R   A++EK HG + SCRVV+E    H H G    V+I++ VP  KELVV++       + H      I +AF+ M+ QL+  A +Q+G VK H
Sbjct:    1 MQIPLQITFRHVDSSAAVEQRVREEAARLEKFHGQIMSCRVVLESPHVHHHKGKLYQVRIDLKVP-GKELVVTRGHGQ--DHAHEDIYVAIRDAFNEMQRQLEDHARRQRGHVKEH 113          
BLAST of mRNA_P-wetherbeei_contig18685.2.1 vs. uniprot
Match: UPI00056D28B1 (HPF/RaiA family ribosome-associated protein n=1 Tax=Myxosarcina sp. GI1 TaxID=1541065 RepID=UPI00056D28B1)

HSP 1 Score: 81.3 bits (199), Expect = 2.050e-16
Identity = 44/121 (36.36%), Postives = 76/121 (62.81%), Query Frame = 1
Query:    1 MQNPLEIKFLHMDTSESLDSTIRARVAKMEKLHGHVNSCRVVVERVQFHGHPGCS--VKIEVGVPPRKELVVSKDSSSYDSNKHNPTRAVIDEAFDAMEGQLKKFASKQKGDVKSHNHDEV 357
            MQ P  I + +++ + ++++ I  ++AK+E+   ++NSCRVVVE+ Q H H G    V I++ VP  +E+VV+   ++    ++ P +AVI +AFDA   QLK  +++Q G+ K+H   EV
Sbjct:    1 MQIPPSITYRNLEKTPAIEALIEEKIAKLEQFCDYINSCRVVVEKAQEHPHSGSPYRVSIDITVPHNREIVVNHSPNT--GKQYPPLQAVIRDAFDAANRQLKDLSNEQHGERKAHPEQEV 119          
BLAST of mRNA_P-wetherbeei_contig18685.2.1 vs. uniprot
Match: A0A2E6QLY9_9PROT (30S ribosomal protein S30 n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6QLY9_9PROT)

HSP 1 Score: 79.0 bits (193), Expect = 1.130e-15
Identity = 42/117 (35.90%), Postives = 71/117 (60.68%), Query Frame = 1
Query:    1 MQNPLEIKFLHMDTSESLDSTIRARVAKMEKLHGHVNSCRVVVERVQFHGHPGCSVKIEVGVP-PRKELVVSKDSSSYDSNKHNP-TRAVIDEAFDAMEGQLKKFASKQKGDVKSHN 345
            M  PLE+ F  +D+SE+++  IR R AK+++L+ H+ SCRV VE        G  +++ + +  P KELVV++     +    +P   A++++AFDA E Q+K+F +K K + K H+
Sbjct:    1 MDVPLELSFHQVDSSETVEQRIRERAAKLDRLYDHIASCRVAVEAPHRQHRKGNQMRVRIDISVPGKELVVTRSPHRPEQTYADPDVYALVNDAFDAAERQIKEFKAKHKREAKPHD 117          
BLAST of mRNA_P-wetherbeei_contig18685.2.1 vs. uniprot
Match: UPI0019F5096E (Ribosome-associated translation inhibitor RaiA n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019F5096E)

HSP 1 Score: 72.8 bits (177), Expect = 2.500e-13
Identity = 40/116 (34.48%), Postives = 74/116 (63.79%), Query Frame = 1
Query:    1 MQNPLEIKFLHMDTSESLDSTIRARVAKMEKLHGHVNSCRVVVERVQFHGHPG--CSVKIEVGVPPRKELVVSKDSSSYDSNKHNPTRAVIDEAFDAMEGQLKKFASKQKGDVKSH 342
            MQ PL+I F ++++SE++++ +R +  K++K +  + +C VVVE      H G    V++++ VP R EL VS++   +  + H      I +AF+A+E QL+K+AS+++ +VK+H
Sbjct:    1 MQLPLQITFRNLESSEAVEAEVRKKAEKLDKRYDRIMTCHVVVEARHKQHHKGNLYHVRVDLTVPDR-ELAVSREPEEH--HAHEDVYVAIRDAFNAVERQLEKYASRRRTEVKAH 113          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18685.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A847P0Y4_9BACT2.420e-2142.74HPF/RaiA family ribosome-associated protein n=1 Ta... [more]
A0A1I6GYH3_9GAMM1.370e-1840.17Cold shock protein, CspA family n=1 Tax=Marinobact... [more]
UPI000376DAA81.040e-1740.52HPF/RaiA family ribosome-associated protein n=3 Ta... [more]
UPI00045E840B1.910e-1737.93HPF/RaiA family ribosome-associated protein n=1 Ta... [more]
A0A0F2QQH7_9DELT3.620e-1740.50DNA-binding protein n=1 Tax=Desulfatitalea sp. BRH... [more]
H8GM11_METAL1.050e-1636.21Ribosome-associated protein Y (PSrp-1) n=2 Tax=Met... [more]
A0A7C1YLR7_9GAMM1.390e-1639.66HPF/RaiA family ribosome-associated protein n=1 Ta... [more]
UPI00056D28B12.050e-1636.36HPF/RaiA family ribosome-associated protein n=1 Ta... [more]
A0A2E6QLY9_9PROT1.130e-1535.9030S ribosomal protein S30 n=1 Tax=Rhodospirillacea... [more]
UPI0019F5096E2.500e-1334.48Ribosome-associated translation inhibitor RaiA n=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18685contigP-wetherbeei_contig18685:724..1116 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1122180.Lokhon_01029
PFAMsCSD,Ribosomal_S30AE
Model size393
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.3e-22
EggNOG OGsCOG1544@1|root,COG1544@2|Bacteria,1RJ55@1224|Proteobacteria,2TXIK@28211|Alphaproteobacteria
DescriptionCOG1544 Ribosome-associated protein Y (PSrp-1)
Cds size393
COG categoryJ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186152.555687-CDS-P-wetherbeei_contig18685:723..11161683186152.555687-CDS-P-wetherbeei_contig18685:723..1116Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18685 724..1116 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18685.2.1prot_P-wetherbeei_contig18685.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18685 724..1116 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18685.2.1

>prot_P-wetherbeei_contig18685.2.1 ID=prot_P-wetherbeei_contig18685.2.1|Name=mRNA_P-wetherbeei_contig18685.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=131bp
MQNPLEIKFLHMDTSESLDSTIRARVAKMEKLHGHVNSCRVVVERVQFHG
HPGCSVKIEVGVPPRKELVVSKDSSSYDSNKHNPTRAVIDEAFDAMEGQL
KKFASKQKGDVKSHNHDEVEVVEEDEEAVV*
back to top

mRNA from alignment at P-wetherbeei_contig18685:724..1116-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18685.2.1 ID=mRNA_P-wetherbeei_contig18685.2.1|Name=mRNA_P-wetherbeei_contig18685.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=393bp|location=Sequence derived from alignment at P-wetherbeei_contig18685:724..1116- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAAAATCCCCTGGAAATTAAGTTCCTTCATATGGATACTTCGGAGTC CCTGGATTCGACGATCCGCGCTCGCGTCGCCAAGATGGAGAAGCTGCACG GTCACGTCAACAGCTGTCGCGTCGTCGTGGAACGAGTCCAATTCCACGGT CATCCCGGCTGCAGTGTGAAGATCGAAGTGGGCGTGCCGCCCCGCAAGGA ACTTGTGGTCTCCAAGGACTCGAGCTCGTACGACTCCAATAAACACAATC CCACTCGCGCCGTCATCGATGAAGCATTCGACGCCATGGAAGGCCAGCTC AAGAAGTTTGCTTCCAAGCAAAAGGGTGACGTGAAATCCCACAATCACGA CGAAGTGGAAGTCGTCGAAGAGGACGAAGAAGCCGTCGTCTAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig18685:724..1116-

>mRNA_P-wetherbeei_contig18685.2.1 ID=mRNA_P-wetherbeei_contig18685.2.1|Name=mRNA_P-wetherbeei_contig18685.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=393bp|location=Sequence derived from alignment at P-wetherbeei_contig18685:724..1116- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAAAATCCCCTGGAAATTAAGTTCCTTCATATGGATACTTCGGAGTC
CCTGGATTCGACGATCCGCGCTCGCGTCGCCAAGATGGAGAAGCTGCACG
GTCACGTCAACAGCTGTCGCGTCGTCGTGGAACGAGTCCAATTCCACGGT
CATCCCGGCTGCAGTGTGAAGATCGAAGTGGGCGTGCCGCCCCGCAAGGA
ACTTGTGGTCTCCAAGGACTCGAGCTCGTACGACTCCAATAAACACAATC
CCACTCGCGCCGTCATCGATGAAGCATTCGACGCCATGGAAGGCCAGCTC
AAGAAGTTTGCTTCCAAGCAAAAGGGTGACGTGAAATCCCACAATCACGA
CGAAGTGGAAGTCGTCGAAGAGGACGAAGAAGCCGTCGTCTAG
back to top